Wall clock time and date at job start Sat Apr 11 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35809 * 126.05587 * 2 1 4 4 C 1.35754 * 107.56983 * 180.02562 * 3 2 1 5 5 N 1.40758 * 126.08540 * 180.02562 * 4 3 2 6 6 C 1.34290 * 124.17432 * 0.02562 * 5 4 3 7 7 O 1.21308 * 124.90455 * 359.24054 * 6 5 4 8 8 C 1.51144 * 110.18533 * 179.25970 * 6 5 4 9 9 C 1.54586 * 104.58906 * 15.91521 * 8 6 5 10 10 H 1.08997 * 112.76345 * 98.06177 * 9 8 6 11 11 C 1.46381 * 124.17476 * 179.72541 * 5 4 3 12 12 H 1.09003 * 112.39561 * 42.00882 * 11 5 4 13 13 C 1.56029 * 110.30174 * 274.98911 * 11 5 4 14 14 C 1.54882 * 101.85974 * 212.57155 * 13 11 5 15 15 N 1.47020 * 108.63901 * 223.61878 * 9 8 6 16 16 S 1.65599 * 125.54802 * 290.53680 * 15 9 8 17 17 O 1.42102 * 106.40621 * 203.53707 * 16 15 9 18 18 O 1.42104 * 106.40569 * 336.46415 * 16 15 9 19 19 C 1.76204 * 107.21666 * 90.00148 * 16 15 9 20 20 H 1.08000 * 120.00167 * 359.97438 * 19 16 15 21 21 C 1.37877 * 120.00107 * 179.97438 * 19 16 15 22 22 N 1.31518 * 120.00074 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 120.00086 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47001 * 60.00417 * 23 21 19 25 25 H 1.48498 * 109.46980 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47267 * 300.00049 * 23 21 19 27 27 C 1.40261 * 107.83610 * 0.02562 * 4 3 2 28 28 N 1.30831 * 108.33069 * 359.71656 * 27 4 3 29 29 H 1.09002 * 109.47391 * 89.99356 * 1 2 3 30 30 H 1.09001 * 109.46813 * 329.99412 * 1 2 3 31 31 H 1.09004 * 109.47041 * 209.99539 * 1 2 3 32 32 H 1.08005 * 126.22077 * 0.03302 * 3 2 1 33 33 H 1.08995 * 110.41610 * 134.69473 * 8 6 5 34 34 H 1.09005 * 110.40762 * 257.01905 * 8 6 5 35 35 H 1.09001 * 110.86725 * 94.43419 * 13 11 5 36 36 H 1.08998 * 110.98362 * 330.76078 * 13 11 5 37 37 H 1.09006 * 110.36546 * 278.37349 * 14 13 11 38 38 H 1.09002 * 110.36581 * 156.06463 * 14 13 11 39 39 H 0.97001 * 120.00386 * 180.02562 * 22 21 19 40 40 H 1.07998 * 125.83485 * 179.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2643 1.0979 0.0000 4 6 3.5518 0.6675 -0.0006 5 7 4.6988 1.4835 -0.0003 6 6 4.6694 2.8260 0.0012 7 8 3.6596 3.4982 -0.0108 8 6 6.0761 3.3785 0.0194 9 6 6.9694 2.1822 -0.3814 10 1 7.2397 2.1927 -1.4372 11 6 6.0708 0.9733 0.0049 12 1 6.2008 0.1245 -0.6665 13 6 6.5301 0.6700 1.4649 14 6 8.0444 0.9875 1.3946 15 7 8.1441 2.1561 0.5025 16 16 9.3779 3.2606 0.4968 17 8 10.5070 2.6038 1.0565 18 8 9.3834 3.8496 -0.7964 19 6 8.9373 4.5406 1.6247 20 1 8.0000 4.4906 2.1589 21 6 9.7891 5.6061 1.8252 22 7 10.9302 5.6673 1.1743 23 14 9.3216 6.9634 3.0204 24 1 9.1416 6.3878 4.3774 25 1 10.3985 7.9854 3.0546 26 1 8.0530 7.5965 2.5789 27 6 3.5359 -0.7350 -0.0015 28 7 2.2894 -1.1324 0.0046 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 0.8900 0.5139 31 1 -0.3633 -0.8901 0.5138 32 1 1.9355 2.1267 0.0005 33 1 6.1764 4.1871 -0.7045 34 1 6.3336 3.7297 1.0187 35 1 6.3622 -0.3775 1.7150 36 1 6.0267 1.3246 2.1763 37 1 8.5901 0.1423 0.9750 38 1 8.4270 1.2328 2.3853 39 1 11.5297 6.4167 1.3157 40 1 4.4042 -1.3772 -0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192950556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:50 Heat of formation + Delta-G solvation = -48.343851 kcal Electronic energy + Delta-G solvation = -28217.001148 eV Core-core repulsion = 24159.488881 eV Total energy + Delta-G solvation = -4057.512267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.66432 -41.46874 -38.98350 -37.42124 -36.25646 -36.13338 -35.16720 -33.99106 -32.64569 -31.45380 -29.42097 -28.27857 -27.75948 -27.15128 -23.38187 -22.93828 -22.78500 -21.27541 -20.61642 -20.33687 -19.41865 -18.74543 -18.23568 -17.23594 -17.04846 -16.64811 -16.48283 -16.18278 -16.13730 -15.97361 -15.48035 -15.42477 -14.83837 -14.77917 -14.41718 -14.01369 -13.95600 -13.78437 -13.66889 -13.42368 -13.34888 -13.14681 -13.00273 -12.90297 -12.50513 -12.44026 -12.34556 -12.21351 -12.08364 -11.94526 -11.82272 -11.23525 -11.22383 -11.08650 -10.95078 -10.40663 -9.85009 -8.74192 -8.67731 -7.46755 0.22536 0.74565 1.19758 1.33790 1.35462 1.37836 1.47849 2.00253 2.03384 2.19903 2.58743 2.73594 3.17074 3.30312 3.56092 3.65521 3.77869 3.85876 3.95735 4.16552 4.22308 4.27179 4.30826 4.39620 4.45340 4.50896 4.60570 4.69732 4.70891 4.74997 4.87306 4.91893 5.02704 5.14037 5.19727 5.31140 5.38316 5.73585 5.79332 5.91621 5.94034 6.03902 6.63270 6.80156 7.00670 8.20806 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019830 B = 0.003477 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.682228 B = 8051.021254 C = 8808.536448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.376 5.376 3 C 0.028 3.972 4 C -0.007 4.007 5 N -0.516 5.516 6 C 0.525 3.475 7 O -0.556 6.556 8 C -0.181 4.181 9 C 0.144 3.856 10 H 0.116 0.884 11 C 0.137 3.863 12 H 0.156 0.844 13 C -0.125 4.125 14 C 0.113 3.887 15 N -1.013 6.013 16 S 2.735 3.265 17 O -1.035 7.035 18 O -1.033 7.033 19 C -1.037 5.037 20 H 0.118 0.882 21 C 0.076 3.924 22 N -0.893 5.893 23 Si 0.981 3.019 24 H -0.251 1.251 25 H -0.265 1.265 26 H -0.254 1.254 27 C 0.049 3.951 28 N -0.302 5.302 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.181 0.819 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.129 0.871 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.299 0.701 40 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.587 -13.021 0.097 21.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.161 5.161 3 C -0.120 4.120 4 C -0.109 4.109 5 N -0.241 5.241 6 C 0.314 3.686 7 O -0.435 6.435 8 C -0.223 4.223 9 C 0.036 3.964 10 H 0.134 0.866 11 C 0.033 3.967 12 H 0.173 0.827 13 C -0.165 4.165 14 C -0.011 4.011 15 N -0.850 5.850 16 S 2.838 3.162 17 O -1.025 7.025 18 O -1.023 7.023 19 C -1.170 5.170 20 H 0.136 0.864 21 C -0.137 4.137 22 N -0.524 5.524 23 Si 0.799 3.201 24 H -0.174 1.174 25 H -0.189 1.189 26 H -0.178 1.178 27 C -0.139 4.139 28 N -0.124 5.124 29 H 0.105 0.895 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.198 0.802 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.147 0.853 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -18.045 -13.655 -0.500 22.634 hybrid contribution 0.470 2.258 0.815 2.446 sum -17.575 -11.397 0.315 20.949 Atomic orbital electron populations 1.22184 0.71439 1.05905 1.04704 1.48664 1.07785 1.02504 1.57168 1.22526 0.90244 0.94146 1.05057 1.17772 0.85724 0.90972 1.16460 1.45023 1.05097 1.04805 1.69154 1.20828 0.90937 0.82039 0.74784 1.90613 1.37732 1.63307 1.51839 1.23005 0.92307 1.00739 1.06208 1.22230 0.84446 0.94108 0.95593 0.86626 1.23144 0.77156 0.96787 0.99594 0.82667 1.23355 0.93430 1.04954 0.94731 1.22192 0.97503 0.87488 0.93953 1.58669 1.37479 1.41141 1.47753 0.99554 0.70609 0.72430 0.73618 1.93315 1.50848 1.77486 1.80875 1.93310 1.86727 1.78227 1.44082 1.30969 1.15883 1.25109 1.45018 0.86356 1.25878 0.92206 1.00219 0.95440 1.69967 1.10114 1.33227 1.39118 0.85290 0.79474 0.76666 0.78634 1.17428 1.18882 1.17753 1.24094 0.96381 0.91976 1.01410 1.77241 1.01488 1.09445 1.24263 0.89453 0.87779 0.88137 0.80189 0.87780 0.86937 0.85307 0.91140 0.89137 0.90899 0.89118 0.76445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.01 11.48 127.77 1.47 2.48 16 2 N -0.38 -7.37 4.04 -368.47 -1.49 -8.85 16 3 C 0.03 0.65 10.68 83.50 0.89 1.54 16 4 C -0.01 -0.16 6.79 37.62 0.26 0.09 16 5 N -0.52 -12.41 2.79 -600.09 -1.68 -14.09 16 6 C 0.52 16.11 7.97 87.87 0.70 16.81 16 7 O -0.56 -19.86 15.60 -3.12 -0.05 -19.91 16 8 C -0.18 -5.87 6.29 30.53 0.19 -5.67 16 9 C 0.14 4.20 4.02 46.30 0.19 4.38 16 10 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 11 C 0.14 2.75 3.68 46.93 0.17 2.93 16 12 H 0.16 1.94 8.14 -2.39 -0.02 1.92 16 13 C -0.13 -2.35 6.65 32.29 0.21 -2.13 16 14 C 0.11 2.98 6.97 86.86 0.61 3.59 16 15 N -1.01 -35.99 3.19 -479.60 -1.53 -37.52 16 16 S 2.73 139.36 5.08 -56.49 -0.29 139.07 16 17 O -1.03 -58.94 17.60 -128.00 -2.25 -61.20 16 18 O -1.03 -58.58 17.60 -128.00 -2.25 -60.84 16 19 C -1.04 -54.64 9.51 67.73 0.64 -54.00 16 20 H 0.12 5.61 6.98 -2.91 -0.02 5.59 16 21 C 0.08 4.12 5.46 84.65 0.46 4.58 16 22 N -0.89 -52.18 13.19 21.45 0.28 -51.90 16 23 Si 0.98 40.79 29.54 68.60 2.03 42.82 16 24 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 25 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 26 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 27 C 0.05 0.89 11.52 85.33 0.98 1.88 16 28 N -0.30 -6.39 12.56 -56.77 -0.71 -7.11 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.18 4.45 6.49 -2.91 -0.02 4.43 16 33 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 34 H 0.11 3.90 6.87 -2.38 -0.02 3.89 16 35 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.53 8.12 -2.39 -0.02 1.52 16 37 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.30 15.78 8.31 -92.71 -0.77 15.01 16 40 H 0.22 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -82.20 351.65 -0.09 -82.29 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 1.08 Total: 20.76 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: 6.78 Total: -23.52 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -5.13 Total: -119.47 kcal Atomic # 8 Polarization: -137.39 SS G_CDS: -4.55 Total: -141.94 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 16 Polarization: 139.36 SS G_CDS: -0.29 Total: 139.07 kcal Total: -82.20 -0.09 -82.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192950556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.943 kcal (2) G-P(sol) polarization free energy of solvation -82.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds