Wall clock time and date at job start Sat Apr 11 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.99537 * 2 1 4 4 C 1.54324 * 109.88258 * 238.90626 * 2 1 3 5 5 H 1.09002 * 110.72090 * 336.75483 * 4 2 1 6 6 N 1.46494 * 110.71847 * 100.02938 * 4 2 1 7 7 C 1.34776 * 119.99593 * 204.99873 * 6 4 2 8 8 O 1.21503 * 120.00240 * 0.02562 * 7 6 4 9 9 C 1.48288 * 119.99862 * 180.02562 * 7 6 4 10 10 C 1.47487 * 128.70755 * 179.97438 * 9 7 6 11 11 N 1.30654 * 102.71448 * 179.97438 * 10 9 7 12 12 O 1.20843 * 109.61735 * 359.97438 * 11 10 9 13 13 N 1.20908 * 115.90513 * 359.73871 * 12 11 10 14 14 C 1.55155 * 102.93924 * 218.39233 * 4 2 1 15 15 C 1.54689 * 101.67730 * 35.33807 * 14 4 2 16 16 N 1.47017 * 109.87719 * 121.09757 * 2 1 3 17 17 C 1.34775 * 125.64996 * 298.31670 * 16 2 1 18 18 O 1.21284 * 120.00295 * 0.02562 * 17 16 2 19 19 C 1.50708 * 119.99957 * 179.97438 * 17 16 2 20 20 S 1.80998 * 109.47052 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00013 * 180.02562 * 20 19 17 22 22 H 1.07991 * 119.99794 * 0.02562 * 21 20 19 23 23 C 1.38798 * 119.99771 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00311 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99653 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47055 * 180.02562 * 25 23 21 27 27 H 1.48508 * 109.47016 * 299.99635 * 25 23 21 28 28 H 1.48495 * 109.47483 * 59.99992 * 25 23 21 29 29 H 1.09000 * 109.47238 * 300.36241 * 1 2 3 30 30 H 1.09000 * 109.46862 * 60.35654 * 1 2 3 31 31 H 1.08999 * 109.47336 * 180.35323 * 1 2 3 32 32 H 0.96994 * 120.00589 * 24.99876 * 6 4 2 33 33 H 1.07997 * 128.65007 * 359.94725 * 10 9 7 34 34 H 1.09001 * 111.00292 * 153.57485 * 14 4 2 35 35 H 1.08998 * 111.00228 * 277.38888 * 14 4 2 36 36 H 1.09002 * 110.38906 * 204.36355 * 15 14 4 37 37 H 1.08994 * 110.24141 * 82.11486 * 15 14 4 38 38 H 1.09005 * 109.46512 * 60.00633 * 19 17 16 39 39 H 1.08991 * 109.47135 * 300.00153 * 19 17 16 40 40 H 0.97001 * 119.99662 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 1.3052 -1.4459 -1.6183 6 7 2.4556 0.1961 -2.2874 7 6 2.4583 -0.1883 -3.5792 8 8 2.1280 -1.3189 -3.8773 9 6 2.8644 0.7687 -4.6366 10 6 2.9382 0.5560 -6.0942 11 7 3.3482 1.7160 -6.5338 12 8 3.4973 2.4728 -5.6035 13 7 3.2432 2.0226 -4.5105 14 6 3.2876 -1.5142 -0.6924 15 6 2.8190 -1.8764 0.7367 16 7 2.0299 -0.7141 1.1839 17 6 1.8085 -0.3613 2.4657 18 8 1.1452 0.6222 2.7180 19 6 2.3841 -1.1896 3.5854 20 16 1.9138 -0.4643 5.1757 21 6 2.6973 -1.5986 6.2729 22 1 3.2579 -2.4327 5.8775 23 6 2.5941 -1.4201 7.6455 24 7 1.9104 -0.4037 8.1275 25 14 3.4253 -2.6223 8.8088 26 1 3.1651 -2.2131 10.2124 27 1 2.8823 -3.9859 8.5825 28 1 4.8887 -2.6240 8.5564 29 1 -0.3634 0.5194 0.8867 30 1 -0.3633 0.5083 -0.8932 31 1 -0.3634 -1.0276 0.0063 32 1 2.7189 1.0988 -2.0495 33 1 2.7105 -0.3366 -6.6580 34 1 3.4852 -2.4110 -1.2796 35 1 4.1656 -0.8690 -0.6609 36 1 3.6776 -2.0265 1.3913 37 1 2.1971 -2.7712 0.7142 38 1 3.4708 -1.2087 3.5015 39 1 1.9967 -2.2063 3.5215 40 1 1.4791 0.2207 7.5234 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281123404.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:17 Heat of formation + Delta-G solvation = 49.475332 kcal Electronic energy + Delta-G solvation = -26237.425502 eV Core-core repulsion = 22184.154993 eV Total energy + Delta-G solvation = -4053.270509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.50435 -40.89968 -39.71857 -37.59090 -35.45983 -35.07687 -34.63887 -32.56616 -31.95579 -31.20243 -28.84103 -27.12420 -25.44355 -24.89148 -24.58118 -23.07001 -21.92466 -21.31308 -19.61497 -19.44229 -18.94671 -18.26035 -18.13819 -17.35886 -16.53491 -16.05785 -15.64985 -15.53662 -15.20071 -14.72344 -14.41528 -14.21594 -14.04663 -13.86259 -13.40553 -13.14888 -13.07577 -12.75846 -12.51191 -12.41716 -12.39489 -12.06851 -11.98576 -11.94159 -11.79740 -11.61481 -11.37777 -11.15961 -11.03896 -10.94556 -10.19959 -9.80583 -9.61857 -9.55104 -9.04986 -8.74432 -8.27026 -6.71979 -6.65601 -4.04171 0.12707 0.74146 1.90697 2.28879 2.64071 2.82845 2.86206 2.90596 3.26341 3.33720 3.35435 3.41578 3.55448 3.90796 4.11517 4.15168 4.21605 4.22642 4.57231 4.74850 4.76534 4.80296 4.87901 5.05329 5.18878 5.24102 5.32610 5.34619 5.44366 5.52603 5.53510 5.66723 5.74040 5.87787 5.94894 6.07323 6.29170 6.63354 7.28468 7.44372 7.80493 7.87968 8.35114 8.46421 9.23245 10.78196 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.029927 B = 0.001939 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.397381 B =14437.156176 C =14634.177068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.080 0.920 4 C 0.136 3.864 5 H 0.116 0.884 6 N -0.699 5.699 7 C 0.611 3.389 8 O -0.508 6.508 9 C -0.044 4.044 10 C 0.040 3.960 11 N -0.351 5.351 12 O 0.345 5.655 13 N -0.318 5.318 14 C -0.145 4.145 15 C 0.101 3.899 16 N -0.621 5.621 17 C 0.550 3.450 18 O -0.511 6.511 19 C -0.125 4.125 20 S -0.115 6.115 21 C -0.608 4.608 22 H 0.066 0.934 23 C 0.035 3.965 24 N -0.883 5.883 25 Si 1.084 2.916 26 H -0.278 1.278 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.411 0.589 33 H 0.229 0.771 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.162 -0.865 -28.706 28.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 H 0.098 0.902 4 C 0.031 3.969 5 H 0.134 0.866 6 N -0.351 5.351 7 C 0.393 3.607 8 O -0.381 6.381 9 C -0.210 4.210 10 C -0.146 4.146 11 N -0.074 5.074 12 O 0.118 5.882 13 N -0.038 5.038 14 C -0.184 4.184 15 C -0.022 4.022 16 N -0.359 5.359 17 C 0.339 3.661 18 O -0.385 6.385 19 C -0.276 4.276 20 S 0.111 5.889 21 C -0.756 4.756 22 H 0.084 0.916 23 C -0.175 4.175 24 N -0.517 5.517 25 Si 0.910 3.090 26 H -0.203 1.203 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.247 0.753 33 H 0.245 0.755 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.495 0.601 -26.913 27.035 hybrid contribution 0.550 -1.483 -1.823 2.414 sum 3.046 -0.882 -28.736 28.910 Atomic orbital electron populations 1.22157 0.93734 1.02860 1.03398 1.21559 0.95389 0.96286 0.83858 0.90208 1.22229 0.97664 0.90834 0.86150 0.86590 1.45758 1.67304 1.16919 1.05107 1.16396 0.77990 0.85237 0.81029 1.90872 1.47076 1.18388 1.81747 1.26199 1.06542 0.92103 0.96120 1.27781 0.98385 0.98044 0.90391 1.75120 1.15856 1.02666 1.13785 1.85120 1.59847 1.36409 1.06796 1.75414 1.11234 1.10585 1.06532 1.23204 0.97836 1.01667 0.95669 1.22272 0.95976 0.89277 0.94720 1.48484 1.53953 1.28971 1.04509 1.20013 0.79794 0.85039 0.81262 1.90706 1.38461 1.26822 1.82463 1.23299 1.03759 1.02445 0.98068 1.84828 1.70786 1.39485 0.93788 1.23684 1.41433 1.15379 0.95067 0.91594 1.26061 0.96066 0.99434 0.95958 1.70807 1.29160 1.12810 1.38912 0.83332 0.75615 0.74389 0.75694 1.20255 1.21112 1.21120 0.90237 0.91850 0.92044 0.75279 0.75474 0.88869 0.89898 0.89628 0.90717 0.88991 0.88912 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.10 37.16 0.34 -1.46 16 2 C 0.13 1.42 3.21 -66.95 -0.21 1.20 16 3 H 0.08 0.87 7.72 -51.93 -0.40 0.46 16 4 C 0.14 1.10 2.85 -66.10 -0.19 0.91 16 5 H 0.12 0.98 7.26 -51.93 -0.38 0.60 16 6 N -0.70 -5.02 5.17 -52.83 -0.27 -5.29 16 7 C 0.61 4.93 7.85 -12.13 -0.10 4.84 16 8 O -0.51 -5.26 16.69 5.36 0.09 -5.18 16 9 C -0.04 -0.31 7.56 -80.07 -0.61 -0.92 16 10 C 0.04 0.22 12.63 -14.29 -0.18 0.04 16 11 N -0.35 -2.38 12.22 30.72 0.38 -2.00 16 12 O 0.35 2.43 11.65 27.26 0.32 2.74 16 13 N -0.32 -2.31 12.13 33.49 0.41 -1.91 16 14 C -0.14 -1.09 6.76 -24.70 -0.17 -1.26 16 15 C 0.10 0.96 6.68 -2.65 -0.02 0.94 16 16 N -0.62 -8.05 3.07 -163.15 -0.50 -8.55 16 17 C 0.55 9.92 7.66 -10.98 -0.08 9.83 16 18 O -0.51 -11.05 14.90 5.55 0.08 -10.97 16 19 C -0.12 -2.46 5.17 36.01 0.19 -2.27 16 20 S -0.12 -3.05 19.60 -107.50 -2.11 -5.15 16 21 C -0.61 -17.26 9.50 30.94 0.29 -16.96 16 22 H 0.07 1.79 7.80 -52.49 -0.41 1.38 16 23 C 0.04 1.02 5.49 -17.43 -0.10 0.92 16 24 N -0.88 -27.22 13.67 55.49 0.76 -26.46 16 25 Si 1.08 24.63 29.92 -169.99 -5.09 19.54 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 29 H 0.08 1.12 6.88 -51.93 -0.36 0.77 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.41 2.55 8.22 -40.82 -0.34 2.22 16 33 H 0.23 0.56 8.06 -52.49 -0.42 0.13 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.79 7.48 -51.93 -0.39 0.40 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 1.68 7.84 -51.91 -0.41 1.28 16 39 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 40 H 0.28 8.74 7.12 -40.82 -0.29 8.45 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -35.29 362.03 -6.03 -41.32 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.72 Total: 0.63 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -0.83 Total: -4.18 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.77 Total: -44.22 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.49 Total: -13.40 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.09 Total: 19.54 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.11 Total: -5.15 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.29 -6.03 -41.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281123404.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.797 kcal (2) G-P(sol) polarization free energy of solvation -35.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds