Wall clock time and date at job start Sat Apr 11 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.99292 * 2 1 4 4 C 1.54322 * 109.88426 * 121.09150 * 2 1 3 5 5 H 1.08999 * 110.71850 * 23.07117 * 4 2 1 6 6 N 1.46503 * 110.72195 * 259.97770 * 4 2 1 7 7 C 1.34772 * 120.00135 * 154.99709 * 6 4 2 8 8 O 1.21500 * 120.00121 * 0.02562 * 7 6 4 9 9 C 1.48283 * 119.99869 * 179.97438 * 7 6 4 10 10 C 1.47487 * 128.70716 * 179.97438 * 9 7 6 11 11 N 1.30650 * 102.71562 * 179.74414 * 10 9 7 12 12 O 1.20837 * 109.61624 * 0.26176 * 11 10 9 13 13 N 1.20902 * 115.90879 * 0.02562 * 12 11 10 14 14 C 1.55159 * 102.94121 * 141.61456 * 4 2 1 15 15 C 1.54904 * 101.57886 * 324.49666 * 14 4 2 16 16 N 1.47025 * 109.88424 * 238.90385 * 2 1 3 17 17 C 1.34778 * 125.65025 * 61.60627 * 16 2 1 18 18 O 1.21286 * 119.99850 * 359.97438 * 17 16 2 19 19 C 1.50691 * 120.00110 * 180.02562 * 17 16 2 20 20 S 1.80993 * 109.47205 * 179.97438 * 19 17 16 21 21 C 1.76209 * 100.00195 * 179.97438 * 20 19 17 22 22 H 1.07995 * 119.99647 * 0.02562 * 21 20 19 23 23 C 1.38800 * 120.00060 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99883 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99803 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47239 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47362 * 119.99972 * 25 23 21 28 28 H 1.48499 * 109.46878 * 240.00070 * 25 23 21 29 29 H 1.08997 * 109.47434 * 298.90503 * 1 2 3 30 30 H 1.08996 * 109.46961 * 58.91231 * 1 2 3 31 31 H 1.08997 * 109.46614 * 178.90627 * 1 2 3 32 32 H 0.97001 * 119.99661 * 335.00007 * 6 4 2 33 33 H 1.08002 * 128.64765 * 0.02562 * 10 9 7 34 34 H 1.08994 * 111.00825 * 82.57531 * 14 4 2 35 35 H 1.09007 * 110.99651 * 206.42554 * 14 4 2 36 36 H 1.08996 * 110.36947 * 278.17012 * 15 14 4 37 37 H 1.09007 * 110.36295 * 155.85201 * 15 14 4 38 38 H 1.08999 * 109.47378 * 299.99997 * 19 17 16 39 39 H 1.09005 * 109.47498 * 59.99554 * 19 17 16 40 40 H 0.96998 * 119.99630 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7494 1.2427 5 1 1.3040 -1.4435 1.6201 6 7 2.4555 0.1962 2.2875 7 6 2.4581 -0.1881 3.5793 8 8 2.1288 -1.3190 3.8774 9 6 2.8641 0.7689 4.6367 10 6 2.9369 0.5565 6.0944 11 7 3.3532 1.7145 6.5333 12 8 3.5019 2.4714 5.6031 13 7 3.2462 2.0219 4.5102 14 6 3.2877 -1.5141 0.6924 15 6 2.8146 -1.8793 -0.7367 16 7 2.0301 -0.7141 -1.1839 17 6 1.8075 -0.3621 -2.4657 18 8 1.1429 0.6206 -2.7181 19 6 2.3834 -1.1901 -3.5854 20 16 1.9114 -0.4661 -5.1756 21 6 2.6957 -1.6000 -6.2729 22 1 3.2567 -2.4337 -5.8774 23 6 2.5924 -1.4216 -7.6456 24 7 1.9089 -0.4051 -8.1275 25 14 3.4231 -2.6241 -8.8088 26 1 4.1237 -3.6706 -8.0216 27 1 2.4001 -3.2594 -9.6776 28 1 4.4067 -1.8980 -9.6517 29 1 -0.3634 0.4967 0.8996 30 1 -0.3633 0.5306 -0.8800 31 1 -0.3632 -1.0275 -0.0196 32 1 2.7187 1.0990 2.0495 33 1 2.7079 -0.3357 6.6582 34 1 4.1655 -0.8687 0.6604 35 1 3.4853 -2.4109 1.2798 36 1 2.1888 -2.7714 -0.7127 37 1 3.6718 -2.0337 -1.3921 38 1 3.4701 -1.2081 -3.5022 39 1 1.9972 -2.2074 -3.5208 40 1 1.8365 -0.2807 -9.0868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281123406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:19 Heat of formation + Delta-G solvation = 54.696212 kcal Electronic energy + Delta-G solvation = -26202.373008 eV Core-core repulsion = 22149.328894 eV Total energy + Delta-G solvation = -4053.044114 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -47.48267 -40.84289 -39.64843 -37.50112 -35.43240 -35.05230 -34.58658 -32.46198 -31.88007 -31.11806 -28.71385 -27.07992 -25.52493 -25.38931 -24.55513 -23.01005 -21.88308 -21.26930 -19.59212 -19.38756 -18.88906 -18.10826 -17.75748 -17.23659 -16.38800 -15.94945 -15.61601 -15.46041 -15.02298 -14.83339 -14.67349 -14.13948 -14.00551 -13.98214 -13.37471 -13.09284 -12.96449 -12.67913 -12.59124 -12.48688 -12.32190 -11.93703 -11.89003 -11.81746 -11.59497 -11.35156 -11.11596 -11.08611 -11.04412 -11.00371 -10.78548 -9.84313 -9.75499 -9.43799 -9.10526 -8.66060 -8.27359 -6.54175 -6.25072 -3.95968 0.15406 0.76429 1.94655 2.32067 2.72305 2.87596 2.94206 2.97555 3.19346 3.22803 3.28535 3.36566 3.55637 3.96826 4.15732 4.17726 4.18950 4.25434 4.62595 4.77234 4.81780 4.88029 4.96297 5.10355 5.12599 5.29443 5.38883 5.44122 5.56062 5.57944 5.60386 5.73722 5.85197 5.93441 6.07940 6.14235 6.37094 6.67187 7.32018 7.53909 7.57114 7.82932 8.32177 8.46440 9.20501 10.82399 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.029983 B = 0.001934 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.631941 B =14476.919434 C =14670.754218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.080 0.920 4 C 0.136 3.864 5 H 0.116 0.884 6 N -0.699 5.699 7 C 0.611 3.389 8 O -0.508 6.508 9 C -0.044 4.044 10 C 0.040 3.960 11 N -0.352 5.352 12 O 0.345 5.655 13 N -0.318 5.318 14 C -0.145 4.145 15 C 0.102 3.898 16 N -0.622 5.622 17 C 0.552 3.448 18 O -0.510 6.510 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.411 0.589 33 H 0.229 0.771 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.983 -0.598 27.979 28.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 H 0.098 0.902 4 C 0.031 3.969 5 H 0.134 0.866 6 N -0.351 5.351 7 C 0.393 3.607 8 O -0.381 6.381 9 C -0.209 4.209 10 C -0.146 4.146 11 N -0.075 5.075 12 O 0.118 5.882 13 N -0.038 5.038 14 C -0.184 4.184 15 C -0.022 4.022 16 N -0.361 5.361 17 C 0.340 3.660 18 O -0.384 6.384 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.206 1.206 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.247 0.753 33 H 0.245 0.755 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.026 1.279 27.626 27.729 hybrid contribution 1.199 -2.402 -0.596 2.750 sum 3.225 -1.123 27.029 27.244 Atomic orbital electron populations 1.22156 0.93790 1.02875 1.03328 1.21549 0.95350 0.96290 0.83910 0.90237 1.22247 0.97663 0.90833 0.86172 0.86645 1.45773 1.67256 1.16935 1.05106 1.16393 0.78010 0.85234 0.81043 1.90870 1.47134 1.18374 1.81755 1.26208 1.06485 0.92139 0.96108 1.27779 0.98351 0.98077 0.90421 1.75115 1.15831 1.02710 1.13805 1.85116 1.59838 1.36414 1.06817 1.75413 1.11235 1.10600 1.06511 1.23237 0.97788 1.01577 0.95756 1.22297 0.96029 0.89236 0.94615 1.48524 1.54177 1.28796 1.04555 1.20045 0.79726 0.85031 0.81168 1.90706 1.38359 1.26887 1.82430 1.23515 1.03690 1.02679 0.99883 1.85408 1.69597 1.37797 0.90534 1.22894 1.38230 1.14115 0.93069 0.90852 1.24998 0.95238 0.95995 0.97378 1.70026 1.38505 1.28098 1.13599 0.86110 0.79022 0.80235 0.80093 1.19602 1.20544 1.20560 0.91945 0.90183 0.92070 0.75288 0.75487 0.89897 0.88978 0.90783 0.89629 0.89251 0.89179 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.09 37.16 0.34 -1.48 16 2 C 0.13 1.43 3.21 -66.95 -0.21 1.22 16 3 H 0.08 0.87 7.72 -51.93 -0.40 0.47 16 4 C 0.14 1.11 2.85 -66.09 -0.19 0.93 16 5 H 0.12 0.99 7.25 -51.93 -0.38 0.62 16 6 N -0.70 -5.11 5.17 -52.83 -0.27 -5.38 16 7 C 0.61 5.00 7.85 -12.13 -0.10 4.91 16 8 O -0.51 -5.33 16.69 5.37 0.09 -5.24 16 9 C -0.04 -0.31 7.56 -80.07 -0.61 -0.92 16 10 C 0.04 0.22 12.63 -14.29 -0.18 0.04 16 11 N -0.35 -2.41 12.22 30.71 0.38 -2.03 16 12 O 0.35 2.45 11.65 27.27 0.32 2.77 16 13 N -0.32 -2.34 12.13 33.49 0.41 -1.93 16 14 C -0.14 -1.11 6.77 -24.58 -0.17 -1.27 16 15 C 0.10 0.97 6.69 -2.53 -0.02 0.96 16 16 N -0.62 -8.14 3.07 -163.02 -0.50 -8.64 16 17 C 0.55 10.00 7.66 -10.99 -0.08 9.92 16 18 O -0.51 -11.13 14.91 5.55 0.08 -11.04 16 19 C -0.15 -2.89 5.16 36.00 0.19 -2.71 16 20 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 21 C -0.53 -14.99 9.50 30.94 0.29 -14.70 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 25 Si 0.92 21.15 29.55 -169.99 -5.02 16.13 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.14 6.90 -51.93 -0.36 0.78 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.41 2.60 8.22 -40.82 -0.34 2.26 16 33 H 0.23 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.80 7.48 -51.92 -0.39 0.41 16 38 H 0.09 1.62 7.85 -51.92 -0.41 1.22 16 39 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 363.41 15.07 5.48 5.48 Total: -1.00 -34.62 363.41 -6.13 -40.75 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -4.77 Total: -0.77 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -0.83 Total: -1.15 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.74 Total: -43.12 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.49 Total: -13.51 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.62 -6.13 -40.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281123406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.447 kcal (2) G-P(sol) polarization free energy of solvation -34.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds