Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 N 1.46503 * 109.46923 * 175.00014 * 4 2 1 6 6 C 1.34771 * 119.99694 * 179.97438 * 5 4 2 7 7 O 1.21287 * 120.00439 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00118 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47317 * 180.02562 * 8 6 5 10 10 C 1.76201 * 99.99899 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99782 * 0.02562 * 10 9 8 12 12 C 1.38795 * 120.00218 * 179.97438 * 10 9 8 13 13 N 1.31630 * 120.00420 * 179.97438 * 12 10 9 14 14 Si 1.86809 * 119.99755 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.46964 * 89.99917 * 14 12 10 16 16 H 1.48506 * 109.46744 * 210.00086 * 14 12 10 17 17 H 1.48501 * 109.46724 * 329.99645 * 14 12 10 18 18 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 19 19 C 1.34770 * 120.00256 * 84.99846 * 18 2 1 20 20 O 1.21541 * 120.00260 * 359.97438 * 19 18 2 21 21 C 1.47934 * 120.00021 * 180.02562 * 19 18 2 22 22 C 1.39981 * 120.11867 * 179.72341 * 21 19 18 23 23 C 1.38414 * 117.97137 * 179.78041 * 22 21 19 24 24 C 1.39349 * 118.03733 * 0.48372 * 23 22 21 25 25 O 1.35516 * 120.03103 * 179.77208 * 24 23 22 26 26 N 1.32676 * 119.93975 * 359.74540 * 24 23 22 27 27 N 1.28359 * 122.19784 * 0.02562 * 26 24 23 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 32 32 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 33 33 H 0.96994 * 120.00097 * 0.02562 * 5 4 2 34 34 H 1.09001 * 109.46755 * 300.00519 * 8 6 5 35 35 H 1.09002 * 109.46894 * 59.99894 * 8 6 5 36 36 H 0.96995 * 120.00237 * 179.97438 * 13 12 10 37 37 H 0.97005 * 119.99374 * 264.99912 * 18 2 1 38 38 H 1.08004 * 121.01372 * 0.02562 * 22 21 19 39 39 H 1.08002 * 120.98075 * 180.23019 * 23 22 21 40 40 H 0.96702 * 113.99822 * 269.97925 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4283 2.1910 7 8 3.5701 -1.8833 3.1399 8 6 5.6751 -1.5359 2.1310 9 16 6.2784 -2.3893 3.6088 10 6 8.0102 -2.3764 3.2840 11 1 8.3864 -1.9231 2.3788 12 6 8.8909 -2.9479 4.1918 13 7 10.1845 -2.9388 3.9489 14 14 8.2401 -3.7314 5.7578 15 1 7.9531 -5.1672 5.5107 16 1 9.2572 -3.6076 6.8328 17 1 6.9927 -3.0418 6.1748 18 7 2.0184 -0.6905 -1.1962 19 6 2.1471 -0.0181 -2.3571 20 8 1.8576 1.1611 -2.4118 21 6 2.6398 -0.7155 -3.5652 22 6 2.7689 -0.0209 -4.7736 23 6 3.2384 -0.7158 -5.8748 24 6 3.5439 -2.0661 -5.7159 25 8 4.0020 -2.7862 -6.7684 26 7 3.3862 -2.6458 -4.5329 27 7 2.9554 -2.0036 -3.5085 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6055 -1.7199 1.2951 33 1 3.9825 -0.4621 0.4319 34 1 5.9638 -2.0989 1.2434 35 1 6.1093 -0.5372 2.0850 36 1 10.8000 -3.3378 4.5836 37 1 2.2491 -1.6317 -1.1527 38 1 2.5138 1.0262 -4.8436 39 1 3.3604 -0.2269 -6.8301 40 1 3.3052 -3.2086 -7.2891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284201461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = -86.282685 kcal Electronic energy + Delta-G solvation = -25786.444549 eV Core-core repulsion = 21727.287131 eV Total energy + Delta-G solvation = -4059.157418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.45788 -41.08409 -40.41072 -38.65948 -37.58041 -34.96633 -34.67553 -34.34978 -33.28957 -31.82675 -30.80950 -27.90596 -26.96956 -26.53233 -25.61024 -23.17423 -21.86562 -21.76497 -20.27861 -19.99799 -19.54856 -18.76700 -17.85823 -17.57902 -17.28462 -17.24080 -17.03554 -16.51629 -16.33361 -15.85679 -15.69115 -15.36533 -15.00916 -14.86521 -14.78814 -14.61651 -14.24218 -13.88008 -13.69927 -13.43115 -13.34648 -13.30371 -13.02743 -13.00510 -12.98564 -12.64121 -12.07900 -11.86262 -11.49320 -11.37825 -11.17508 -11.05976 -10.95671 -10.70516 -10.55311 -10.32665 -10.19282 -8.99935 -8.52079 -6.23037 -0.81018 -0.41325 0.97963 1.31868 1.37717 1.46423 1.53800 1.55302 1.76433 2.16306 2.23198 2.26360 2.41854 2.70248 2.84441 2.86171 3.39784 3.52038 3.63782 3.72479 3.83528 3.86990 4.04414 4.19901 4.22874 4.45031 4.45368 4.57876 4.69342 4.71967 4.76446 4.89436 4.94884 5.22476 5.31310 5.37102 5.69913 6.10612 6.22510 6.36612 6.43309 6.86934 6.92815 7.13130 7.31810 8.60595 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011258 B = 0.002483 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.509637 B =11273.201972 C =13179.365321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.139 3.861 3 H 0.098 0.902 4 C 0.114 3.886 5 N -0.715 5.715 6 C 0.539 3.461 7 O -0.556 6.556 8 C -0.115 4.115 9 S -0.169 6.169 10 C -0.531 4.531 11 H 0.059 0.941 12 C 0.044 3.956 13 N -0.919 5.919 14 Si 0.916 3.084 15 H -0.262 1.262 16 H -0.259 1.259 17 H -0.235 1.235 18 N -0.701 5.701 19 C 0.585 3.415 20 O -0.546 6.546 21 C -0.003 4.003 22 C -0.046 4.046 23 C -0.121 4.121 24 C 0.277 3.723 25 O -0.478 6.478 26 N -0.293 5.293 27 N -0.200 5.200 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.411 0.589 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.277 0.723 37 H 0.417 0.583 38 H 0.186 0.814 39 H 0.203 0.797 40 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.672 7.541 -23.398 33.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.034 3.966 3 H 0.116 0.884 4 C -0.010 4.010 5 N -0.368 5.368 6 C 0.324 3.676 7 O -0.434 6.434 8 C -0.266 4.266 9 S 0.058 5.942 10 C -0.678 4.678 11 H 0.078 0.922 12 C -0.161 4.161 13 N -0.557 5.557 14 Si 0.738 3.262 15 H -0.186 1.186 16 H -0.183 1.183 17 H -0.158 1.158 18 N -0.352 5.352 19 C 0.368 3.632 20 O -0.423 6.423 21 C -0.151 4.151 22 C -0.075 4.075 23 C -0.150 4.150 24 C 0.092 3.908 25 O -0.288 6.288 26 N -0.147 5.147 27 N -0.049 5.049 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.247 0.753 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.254 0.746 38 H 0.203 0.797 39 H 0.220 0.780 40 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -23.051 6.384 -20.815 31.707 hybrid contribution 1.152 0.738 -1.924 2.361 sum -21.898 7.122 -22.739 32.362 Atomic orbital electron populations 1.22078 0.92216 1.03508 1.03666 1.21326 0.96167 0.97303 0.81756 0.88361 1.21808 0.78966 1.02133 0.98086 1.45728 1.08024 1.59812 1.23281 1.19831 0.88409 0.77114 0.82198 1.90699 1.70143 1.48275 1.34286 1.23286 0.95199 1.05557 1.02542 1.84627 1.04331 1.76861 1.28400 1.22471 0.90986 1.44103 1.10263 0.92243 1.25603 0.94334 0.95043 1.01136 1.70020 1.02796 1.44658 1.38185 0.85841 0.80468 0.80345 0.79559 1.18642 1.18319 1.15839 1.46018 1.65195 1.15163 1.08864 1.17492 0.77471 0.85639 0.82575 1.90820 1.51161 1.15481 1.84827 1.22912 1.02173 0.93417 0.96594 1.22680 0.91773 1.03342 0.89676 1.22947 0.95984 0.93366 1.02745 1.21279 0.90361 0.90515 0.88632 1.84720 1.37403 1.68798 1.37920 1.73009 1.11947 1.31849 0.97866 1.73193 1.05134 1.06434 1.20161 0.91204 0.89399 0.92057 0.89133 0.90343 0.75285 0.87243 0.87079 0.91343 0.74617 0.79663 0.77954 0.70316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.48 71.98 0.68 -1.08 16 2 C 0.14 1.94 2.73 44.99 0.12 2.06 16 3 H 0.10 1.49 7.58 -2.39 -0.02 1.47 16 4 C 0.11 2.00 5.23 86.38 0.45 2.45 16 5 N -0.71 -16.13 5.39 -463.06 -2.49 -18.63 16 6 C 0.54 18.03 7.85 87.66 0.69 18.71 16 7 O -0.56 -22.82 15.86 -3.05 -0.05 -22.87 16 8 C -0.11 -4.37 6.16 71.24 0.44 -3.93 16 9 S -0.17 -8.56 18.55 -56.49 -1.05 -9.61 16 10 C -0.53 -31.31 10.04 67.95 0.68 -30.63 16 11 H 0.06 3.72 8.03 -2.91 -0.02 3.69 16 12 C 0.04 2.62 5.50 84.86 0.47 3.08 16 13 N -0.92 -56.67 13.97 21.65 0.30 -56.37 16 14 Si 0.92 45.31 27.74 68.60 1.90 47.21 16 15 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 16 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.23 -11.50 6.74 99.48 0.67 -10.83 16 18 N -0.70 -10.70 4.51 -445.33 -2.01 -12.71 16 19 C 0.58 10.31 7.77 86.81 0.67 10.98 16 20 O -0.55 -11.66 16.05 -3.84 -0.06 -11.72 16 21 C 0.00 -0.05 6.83 42.00 0.29 0.23 16 22 C -0.05 -0.50 9.72 22.73 0.22 -0.27 16 23 C -0.12 -0.92 10.14 22.58 0.23 -0.69 16 24 C 0.28 3.69 7.85 84.83 0.67 4.36 16 25 O -0.48 -4.58 13.56 -88.19 -1.20 -5.77 16 26 N -0.29 -5.98 11.54 -170.02 -1.96 -7.94 16 27 N -0.20 -4.01 10.73 -48.51 -0.52 -4.54 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.41 7.77 8.14 -92.71 -0.75 7.02 16 34 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 35 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 36 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 37 H 0.42 6.43 7.95 -92.70 -0.74 5.69 16 38 H 0.19 1.28 7.71 -2.91 -0.02 1.25 16 39 H 0.20 -0.09 8.06 -2.91 -0.02 -0.12 16 40 H 0.43 -0.69 9.06 -74.06 -0.67 -1.36 16 Total: -1.00 -83.41 369.98 -2.60 -86.00 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -1.07 Total: 11.67 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 5.61 Total: 5.28 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -6.68 Total: -100.19 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -1.31 Total: -40.36 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.21 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.05 Total: -9.61 kcal Total: -83.41 -2.60 -86.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284201461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.280 kcal (2) G-P(sol) polarization free energy of solvation -83.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds