Wall clock time and date at job start Sat Apr 11 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35725 * 117.00367 * 2 1 4 4 C 1.39450 * 120.81163 * 179.97438 * 3 2 1 5 5 N 1.31950 * 119.08307 * 180.02562 * 4 3 2 6 6 C 1.32542 * 120.83887 * 359.97438 * 5 4 3 7 7 C 1.48296 * 119.10976 * 180.02562 * 6 5 4 8 8 O 1.21498 * 120.00325 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99657 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00072 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46953 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00107 * 179.97438 * 12 11 10 14 14 O 1.21284 * 119.99695 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00208 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.47017 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99878 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00130 * 0.02562 * 17 16 15 19 19 C 1.38805 * 119.99971 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99821 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00090 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47216 * 89.99486 * 21 19 17 23 23 H 1.48495 * 109.47320 * 209.99909 * 21 19 17 24 24 H 1.48504 * 109.46786 * 329.99937 * 21 19 17 25 25 N 1.32538 * 121.77424 * 0.27563 * 6 5 4 26 26 C 1.31955 * 120.83691 * 359.44678 * 25 6 5 27 27 H 1.09001 * 109.47753 * 300.00110 * 1 2 3 28 28 H 1.09010 * 109.46985 * 59.99783 * 1 2 3 29 29 H 1.09005 * 109.47416 * 179.97438 * 1 2 3 30 30 H 1.07994 * 120.45378 * 0.02562 * 4 3 2 31 31 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 32 32 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 33 33 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 34 34 H 1.09001 * 109.46832 * 299.99854 * 11 10 9 35 35 H 1.08996 * 109.46952 * 59.99873 * 11 10 9 36 36 H 0.96994 * 120.00508 * 359.97438 * 12 11 10 37 37 H 1.09001 * 109.47328 * 299.99853 * 15 13 12 38 38 H 1.08996 * 109.47197 * 60.00326 * 15 13 12 39 39 H 0.97003 * 119.99835 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.45870 * 180.27380 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4366 1.3019 0.0005 5 7 4.0000 2.4951 0.0010 6 6 3.2610 3.5954 0.0005 7 6 3.9344 4.9166 0.0005 8 8 5.1477 4.9802 0.0015 9 7 3.2004 6.0470 0.0005 10 6 3.8655 7.3523 0.0011 11 6 2.8118 8.4616 0.0016 12 7 3.4770 9.7669 0.0016 13 6 2.7430 10.8973 0.0015 14 8 1.5318 10.8339 0.0010 15 6 3.4272 12.2400 0.0020 16 16 2.1806 13.5523 0.0025 17 6 3.2280 14.9692 0.0023 18 1 4.3012 14.8474 0.0016 19 6 2.6740 16.2419 0.0020 20 7 3.4565 17.3003 0.0014 21 14 0.8179 16.4525 0.0026 22 1 0.3265 16.5087 1.4027 23 1 0.4625 17.7128 -0.6977 24 1 0.1892 15.3032 -0.6969 25 7 1.9366 3.5465 0.0049 26 6 1.3023 2.3894 -0.0009 27 1 -0.3635 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 4.0446 0.4094 0.0005 31 1 2.2317 5.9963 0.0002 32 1 4.4880 7.4425 0.8913 33 1 4.4886 7.4430 -0.8886 34 1 2.1890 8.3716 -0.8884 35 1 2.1891 8.3708 0.8916 36 1 4.4456 9.8177 0.0016 37 1 4.0496 12.3303 0.8923 38 1 4.0503 12.3306 -0.8877 39 1 3.0693 18.1897 0.0016 40 1 0.2228 2.3568 -0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292518417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:49 Heat of formation + Delta-G solvation = -50.178346 kcal Electronic energy + Delta-G solvation = -24675.932249 eV Core-core repulsion = 20618.340433 eV Total energy + Delta-G solvation = -4057.591817 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.08827 -40.11301 -39.37136 -38.94433 -36.11153 -34.71516 -33.93731 -32.44131 -32.06203 -30.41278 -28.80293 -28.00157 -25.66426 -25.53439 -24.91733 -22.97529 -21.63824 -20.49315 -19.20219 -18.86903 -18.73569 -17.85326 -16.94796 -16.65916 -16.30890 -16.30078 -15.71219 -15.63812 -15.54992 -15.26074 -14.94664 -14.77224 -14.41937 -14.11932 -13.95435 -13.74198 -13.32497 -13.17474 -12.80287 -12.55397 -12.35617 -12.18884 -12.09681 -11.77649 -11.68317 -11.27432 -11.01303 -10.66339 -10.58515 -9.98327 -9.87009 -9.62449 -9.61509 -9.42666 -9.10404 -8.99843 -8.51490 -6.92806 -6.29099 -4.01174 -0.15277 0.27862 2.07921 2.12499 2.29986 2.78550 2.91223 3.21003 3.22723 3.32058 3.34950 3.44473 3.49897 3.61720 3.84887 3.95125 4.29011 4.32704 4.33953 4.35391 4.45631 4.72668 4.73097 4.76379 4.91923 5.09972 5.11242 5.24850 5.28564 5.56816 5.63770 5.75753 5.89417 5.95333 6.00503 6.29218 6.39589 6.86234 7.27143 7.50762 7.69771 7.93895 8.40932 8.41937 9.16952 10.80115 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.030746 B = 0.001497 C = 0.001430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.466875 B =18698.702934 C =19578.119072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.296 6.296 3 C 0.047 3.953 4 C 0.125 3.875 5 N -0.426 5.426 6 C 0.240 3.760 7 C 0.591 3.409 8 O -0.502 6.502 9 N -0.706 5.706 10 C 0.109 3.891 11 C 0.111 3.889 12 N -0.734 5.734 13 C 0.533 3.467 14 O -0.518 6.518 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.522 4.522 18 H 0.089 0.911 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 N -0.455 5.455 26 C 0.065 3.935 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.186 0.814 31 H 0.414 0.586 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.403 0.597 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.271 0.729 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.651 -37.418 -0.101 37.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.206 6.206 3 C -0.004 4.004 4 C -0.045 4.045 5 N -0.141 5.141 6 C -0.029 4.029 7 C 0.372 3.628 8 O -0.373 6.373 9 N -0.360 5.360 10 C -0.015 4.015 11 C -0.014 4.014 12 N -0.390 5.390 13 C 0.319 3.681 14 O -0.392 6.392 15 C -0.275 4.275 16 S 0.085 5.915 17 C -0.670 4.670 18 H 0.107 0.893 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 N -0.172 5.172 26 C -0.103 4.103 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.129 0.871 30 H 0.203 0.797 31 H 0.251 0.749 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.237 0.763 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.217 -36.548 -0.096 36.919 hybrid contribution -0.063 -0.394 0.033 0.401 sum -5.280 -36.942 -0.063 37.318 Atomic orbital electron populations 1.23315 0.76944 1.05375 1.02140 1.86110 1.22512 1.24736 1.87247 1.21267 0.95267 0.87005 0.96895 1.22933 0.89333 0.96290 0.95949 1.68257 1.39767 0.97564 1.08469 1.22609 0.86104 0.94146 1.00031 1.16997 0.86164 0.81794 0.77807 1.90849 1.12615 1.86190 1.47692 1.45507 1.11306 1.04662 1.74521 1.21546 0.95388 0.80699 1.03853 1.21316 0.94812 0.81822 1.03431 1.45748 1.10410 1.04771 1.78060 1.20291 0.87596 0.85096 0.75077 1.90707 1.13834 1.87071 1.47578 1.23277 1.03677 0.94492 1.06034 1.84781 1.11157 0.98166 1.97445 1.22320 0.95352 0.90448 1.58847 0.89332 1.24712 0.98721 0.94673 0.93166 1.69941 1.35499 0.98187 1.48012 0.86733 0.85366 0.79820 0.79919 1.19217 1.19937 1.15933 1.68110 1.10117 1.29271 1.09699 1.23479 1.01487 0.86518 0.98816 0.91764 0.91768 0.87067 0.79674 0.74937 0.90096 0.90088 0.90701 0.90696 0.76252 0.88301 0.88257 0.91934 0.80325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.84 101.05 0.99 1.00 16 2 O -0.30 -1.20 10.51 -18.88 -0.20 -1.39 16 3 C 0.05 0.26 6.75 -38.68 -0.26 -0.01 16 4 C 0.12 0.83 11.28 -17.05 -0.19 0.64 16 5 N -0.43 -4.31 10.11 -11.03 -0.11 -4.43 16 6 C 0.24 2.43 7.59 -157.05 -1.19 1.24 16 7 C 0.59 6.67 7.84 -12.12 -0.10 6.57 16 8 O -0.50 -7.28 16.86 5.37 0.09 -7.19 16 9 N -0.71 -6.18 5.54 -61.10 -0.34 -6.52 16 10 C 0.11 0.92 5.79 -4.04 -0.02 0.90 16 11 C 0.11 1.09 5.79 -4.05 -0.02 1.07 16 12 N -0.73 -8.61 5.56 -60.30 -0.33 -8.94 16 13 C 0.53 9.06 7.85 -10.99 -0.09 8.97 16 14 O -0.52 -10.76 15.86 5.55 0.09 -10.67 16 15 C -0.12 -2.33 6.16 36.00 0.22 -2.11 16 16 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 17 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 20 N -0.88 -26.48 13.97 55.49 0.78 -25.70 16 21 Si 0.86 21.66 27.74 -169.99 -4.72 16.94 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 25 N -0.46 -3.63 9.55 -11.03 -0.11 -3.73 16 26 C 0.07 0.35 10.31 -17.05 -0.18 0.17 16 27 H 0.06 -0.02 7.71 -51.93 -0.40 -0.42 16 28 H 0.06 -0.02 7.71 -51.92 -0.40 -0.42 16 29 H 0.11 -0.10 8.14 -51.93 -0.42 -0.53 16 30 H 0.19 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.41 3.01 7.77 -40.82 -0.32 2.69 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.40 3.60 8.47 -40.82 -0.35 3.25 16 37 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 38 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.18 0.34 6.47 -52.49 -0.34 0.00 16 LS Contribution 369.44 15.07 5.57 5.57 Total: -1.00 -38.42 369.44 -6.66 -45.07 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.76 Total: 0.03 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -0.62 Total: 6.50 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.12 Total: -49.32 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.02 Total: -19.25 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.72 Total: 16.94 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.42 -6.66 -45.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292518417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.105 kcal (2) G-P(sol) polarization free energy of solvation -38.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds