Wall clock time and date at job start Sat Apr 11 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35725 * 117.00367 * 2 1 4 4 C 1.39450 * 120.81163 * 179.97438 * 3 2 1 5 5 N 1.31950 * 119.08307 * 180.02562 * 4 3 2 6 6 C 1.32542 * 120.83887 * 359.97438 * 5 4 3 7 7 C 1.48296 * 119.10976 * 180.02562 * 6 5 4 8 8 O 1.21498 * 120.00325 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99657 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00072 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46953 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00107 * 179.97438 * 12 11 10 14 14 O 1.21284 * 119.99695 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00208 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.47017 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99878 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00130 * 0.02562 * 17 16 15 19 19 C 1.38805 * 119.99971 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99821 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00090 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47216 * 89.99486 * 21 19 17 23 23 H 1.48495 * 109.47320 * 209.99909 * 21 19 17 24 24 H 1.48504 * 109.46786 * 329.99937 * 21 19 17 25 25 N 1.32538 * 121.77424 * 0.27563 * 6 5 4 26 26 C 1.31955 * 120.83691 * 359.44678 * 25 6 5 27 27 H 1.09001 * 109.47753 * 300.00110 * 1 2 3 28 28 H 1.09010 * 109.46985 * 59.99783 * 1 2 3 29 29 H 1.09005 * 109.47416 * 179.97438 * 1 2 3 30 30 H 1.07994 * 120.45378 * 0.02562 * 4 3 2 31 31 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 32 32 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 33 33 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 34 34 H 1.09001 * 109.46832 * 299.99854 * 11 10 9 35 35 H 1.08996 * 109.46952 * 59.99873 * 11 10 9 36 36 H 0.96994 * 120.00508 * 359.97438 * 12 11 10 37 37 H 1.09001 * 109.47328 * 299.99853 * 15 13 12 38 38 H 1.08996 * 109.47197 * 60.00326 * 15 13 12 39 39 H 0.97003 * 119.99835 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.45870 * 180.27380 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4366 1.3019 0.0005 5 7 4.0000 2.4951 0.0010 6 6 3.2610 3.5954 0.0005 7 6 3.9344 4.9166 0.0005 8 8 5.1477 4.9802 0.0015 9 7 3.2004 6.0470 0.0005 10 6 3.8655 7.3523 0.0011 11 6 2.8118 8.4616 0.0016 12 7 3.4770 9.7669 0.0016 13 6 2.7430 10.8973 0.0015 14 8 1.5318 10.8339 0.0010 15 6 3.4272 12.2400 0.0020 16 16 2.1806 13.5523 0.0025 17 6 3.2280 14.9692 0.0023 18 1 4.3012 14.8474 0.0016 19 6 2.6740 16.2419 0.0020 20 7 3.4565 17.3003 0.0014 21 14 0.8179 16.4525 0.0026 22 1 0.3265 16.5087 1.4027 23 1 0.4625 17.7128 -0.6977 24 1 0.1892 15.3032 -0.6969 25 7 1.9366 3.5465 0.0049 26 6 1.3023 2.3894 -0.0009 27 1 -0.3635 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 4.0446 0.4094 0.0005 31 1 2.2317 5.9963 0.0002 32 1 4.4880 7.4425 0.8913 33 1 4.4886 7.4430 -0.8886 34 1 2.1890 8.3716 -0.8884 35 1 2.1891 8.3708 0.8916 36 1 4.4456 9.8177 0.0016 37 1 4.0496 12.3303 0.8923 38 1 4.0503 12.3306 -0.8877 39 1 3.0693 18.1897 0.0016 40 1 0.2228 2.3568 -0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292518417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:49 Heat of formation + Delta-G solvation = -82.373157 kcal Electronic energy + Delta-G solvation = -24677.328321 eV Core-core repulsion = 20618.340433 eV Total energy + Delta-G solvation = -4058.987888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.60142 -40.89798 -40.50760 -39.48208 -37.06339 -35.43879 -34.80929 -34.65431 -32.62025 -31.59953 -29.52869 -28.56381 -27.82853 -26.14529 -25.42279 -23.75119 -22.43236 -21.69958 -19.99589 -19.70538 -19.29352 -19.17852 -17.93748 -17.38464 -17.32984 -17.06121 -17.05279 -16.71345 -16.46017 -16.32617 -15.69015 -15.64333 -15.53293 -14.92948 -14.89955 -14.79173 -14.65501 -14.63623 -13.75216 -13.50562 -13.33113 -13.02766 -12.92902 -12.87060 -12.62142 -12.57492 -12.48904 -12.24433 -11.85742 -11.48942 -11.15718 -11.05530 -10.52446 -10.51435 -10.38557 -10.18070 -9.87384 -8.97859 -8.50147 -6.20927 -0.71462 -0.18101 0.98093 1.32935 1.38094 1.42136 1.50327 1.55383 1.64259 1.95127 2.25729 2.32400 2.61710 2.70462 2.78956 2.88268 3.02592 3.25061 3.56433 3.61423 3.86084 3.91352 4.00284 4.26429 4.29444 4.37838 4.37889 4.50746 4.54832 4.76267 4.80288 4.81342 4.86217 5.11519 5.34087 5.52262 5.71973 5.94926 6.13086 6.16416 6.42001 6.69289 6.94681 6.95029 7.15848 8.62250 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.030746 B = 0.001497 C = 0.001430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.466875 B =18698.702934 C =19578.119072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.301 6.301 3 C 0.065 3.935 4 C 0.111 3.889 5 N -0.458 5.458 6 C 0.213 3.787 7 C 0.589 3.411 8 O -0.545 6.545 9 N -0.694 5.694 10 C 0.117 3.883 11 C 0.117 3.883 12 N -0.710 5.710 13 C 0.539 3.461 14 O -0.559 6.559 15 C -0.113 4.113 16 S -0.174 6.174 17 C -0.530 4.530 18 H 0.062 0.938 19 C 0.045 3.955 20 N -0.918 5.918 21 Si 0.915 3.085 22 H -0.262 1.262 23 H -0.260 1.260 24 H -0.235 1.235 25 N -0.458 5.458 26 C 0.064 3.936 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.128 0.872 30 H 0.207 0.793 31 H 0.422 0.578 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.420 0.580 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.277 0.723 40 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.431 -39.769 -0.116 40.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.211 6.211 3 C 0.013 3.987 4 C -0.057 4.057 5 N -0.174 5.174 6 C -0.055 4.055 7 C 0.372 3.628 8 O -0.420 6.420 9 N -0.347 5.347 10 C -0.007 4.007 11 C -0.008 4.008 12 N -0.365 5.365 13 C 0.325 3.675 14 O -0.437 6.437 15 C -0.264 4.264 16 S 0.052 5.948 17 C -0.678 4.678 18 H 0.080 0.920 19 C -0.160 4.160 20 N -0.556 5.556 21 Si 0.737 3.263 22 H -0.187 1.187 23 H -0.184 1.184 24 H -0.159 1.159 25 N -0.175 5.175 26 C -0.104 4.104 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.146 0.854 30 H 0.224 0.776 31 H 0.260 0.740 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.257 0.743 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.086 0.914 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.985 -38.934 -0.112 39.556 hybrid contribution 0.493 0.063 0.043 0.499 sum -6.493 -38.870 -0.070 39.409 Atomic orbital electron populations 1.23681 0.74833 1.07029 1.03441 1.86125 1.24630 1.23870 1.86436 1.21229 0.94906 0.87654 0.94939 1.23301 0.90573 0.95946 0.95926 1.68182 1.41015 0.98582 1.09571 1.22315 0.86958 0.93616 1.02652 1.17260 0.85802 0.82717 0.77026 1.90810 1.14290 1.86902 1.50014 1.45414 1.11641 1.04238 1.73455 1.21449 0.94849 0.80085 1.04271 1.21357 0.94999 0.80787 1.03629 1.45471 1.11160 1.04176 1.75705 1.19882 0.86986 0.85495 0.75157 1.90700 1.15399 1.87537 1.50047 1.23277 1.02059 0.93339 1.07713 1.84674 1.13443 0.99040 1.97601 1.22482 0.94763 0.92296 1.58255 0.91982 1.25576 1.03070 0.94482 0.92863 1.70023 1.37504 0.98871 1.49172 0.85855 0.80078 0.80158 0.80209 1.18697 1.18437 1.15918 1.68098 1.09100 1.30495 1.09811 1.24074 1.02980 0.85699 0.97625 0.90431 0.90427 0.85415 0.77614 0.73972 0.89733 0.89720 0.90536 0.90526 0.74297 0.86655 0.86621 0.91402 0.76810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.84 113.37 1.12 1.11 16 2 O -0.30 -1.65 10.51 -90.47 -0.95 -2.61 16 3 C 0.07 0.58 6.75 22.85 0.15 0.73 16 4 C 0.11 1.40 11.28 84.97 0.96 2.36 16 5 N -0.46 -9.36 10.11 -188.81 -1.91 -11.27 16 6 C 0.21 4.29 7.59 137.56 1.04 5.33 16 7 C 0.59 13.36 7.84 86.92 0.68 14.04 16 8 O -0.55 -16.21 16.86 -3.71 -0.06 -16.28 16 9 N -0.69 -11.55 5.54 -465.53 -2.58 -14.13 16 10 C 0.12 1.81 5.79 86.38 0.50 2.31 16 11 C 0.12 2.05 5.79 86.38 0.50 2.55 16 12 N -0.71 -15.03 5.56 -463.07 -2.57 -17.60 16 13 C 0.54 17.38 7.85 87.66 0.69 18.07 16 14 O -0.56 -22.56 15.86 -3.04 -0.05 -22.61 16 15 C -0.11 -4.09 6.16 71.23 0.44 -3.65 16 16 S -0.17 -8.64 18.55 -56.49 -1.05 -9.69 16 17 C -0.53 -30.68 10.04 67.96 0.68 -30.00 16 18 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 19 C 0.05 2.65 5.50 84.86 0.47 3.12 16 20 N -0.92 -55.82 13.97 21.65 0.30 -55.52 16 21 Si 0.92 44.67 27.74 68.60 1.90 46.57 16 22 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.24 -11.41 6.74 99.48 0.67 -10.74 16 25 N -0.46 -6.74 9.55 -188.81 -1.80 -8.54 16 26 C 0.06 0.54 10.31 84.97 0.88 1.42 16 27 H 0.08 -0.33 7.71 -2.39 -0.02 -0.34 16 28 H 0.08 -0.33 7.71 -2.38 -0.02 -0.35 16 29 H 0.13 -0.65 8.14 -2.38 -0.02 -0.67 16 30 H 0.21 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.42 5.62 7.77 -92.71 -0.72 4.90 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.42 6.35 8.47 -92.71 -0.79 5.56 16 37 H 0.12 3.81 8.14 -2.40 -0.02 3.79 16 38 H 0.12 3.83 8.14 -2.40 -0.02 3.81 16 39 H 0.28 15.56 8.31 -92.71 -0.77 14.78 16 40 H 0.22 0.05 6.47 -2.91 -0.02 0.03 16 Total: -1.00 -84.92 369.44 -1.10 -86.02 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -0.43 Total: 8.25 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 8.10 Total: 17.40 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -8.56 Total: -107.06 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -1.06 Total: -41.49 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.90 Total: 46.57 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.05 Total: -9.69 kcal Total: -84.92 -1.10 -86.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292518417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.644 kcal (2) G-P(sol) polarization free energy of solvation -84.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds