Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46997 * 2 1 4 4 N 1.46502 * 109.46817 * 119.99585 * 2 1 3 5 5 C 1.34779 * 120.00129 * 274.99784 * 4 2 1 6 6 O 1.21346 * 119.99836 * 0.02562 * 5 4 2 7 7 C 1.49443 * 119.99981 * 179.97438 * 5 4 2 8 8 O 1.21355 * 120.00033 * 0.02562 * 7 5 4 9 9 N 1.34771 * 120.00245 * 180.02562 * 7 5 4 10 10 C 1.47425 * 125.64669 * 0.04224 * 9 7 5 11 11 C 1.54916 * 104.83490 * 204.09211 * 10 9 7 12 12 C 1.55152 * 101.58040 * 322.99126 * 11 10 9 13 13 O 1.42896 * 110.72321 * 277.13824 * 12 11 10 14 14 C 1.50700 * 110.71749 * 153.86109 * 12 11 10 15 15 H 1.07999 * 119.99977 * 271.33602 * 14 12 11 16 16 C 1.37878 * 120.00030 * 91.34126 * 14 12 11 17 17 N 1.31510 * 120.00348 * 173.70385 * 16 14 12 18 18 Si 1.86803 * 119.99804 * 353.70588 * 16 14 12 19 19 H 1.48501 * 109.47017 * 87.22403 * 18 16 14 20 20 H 1.48500 * 109.47257 * 207.22583 * 18 16 14 21 21 H 1.48502 * 109.46928 * 327.22813 * 18 16 14 22 22 C 1.47029 * 125.65214 * 180.02562 * 9 7 5 23 23 C 1.50699 * 109.47056 * 239.99497 * 2 1 3 24 24 C 1.35345 * 123.76193 * 84.73061 * 23 2 1 25 25 S 1.72119 * 104.14769 * 179.89894 * 24 23 2 26 26 N 1.56511 * 95.88885 * 0.32564 * 25 24 23 27 27 N 1.27577 * 109.21679 * 359.80124 * 26 25 24 28 28 H 1.09003 * 109.47319 * 300.00311 * 1 2 3 29 29 H 1.09001 * 109.47323 * 60.00241 * 1 2 3 30 30 H 1.08997 * 109.47495 * 180.02562 * 1 2 3 31 31 H 0.96999 * 119.99864 * 94.99735 * 4 2 1 32 32 H 1.08992 * 110.36876 * 322.93649 * 10 9 7 33 33 H 1.09008 * 110.36492 * 85.14507 * 10 9 7 34 34 H 1.09000 * 111.00055 * 81.06529 * 11 10 9 35 35 H 1.08999 * 111.00175 * 204.91535 * 11 10 9 36 36 H 0.96701 * 114.00351 * 169.73880 * 13 12 11 37 37 H 0.97001 * 120.00269 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.87666 * 298.39240 * 22 9 7 39 39 H 1.08993 * 109.88269 * 59.56056 * 22 9 7 40 40 H 1.07996 * 127.92756 * 359.97438 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8580 1.1592 2.4117 7 6 2.6445 -0.7227 3.5776 8 8 2.9331 -1.9002 3.5232 9 7 2.7728 -0.0505 4.7386 10 6 2.4590 1.3751 4.9452 11 6 3.3174 1.7976 6.1636 12 6 3.2518 0.5242 7.0475 13 8 2.0508 0.5074 7.8217 14 6 4.4637 0.4306 7.9384 15 1 5.3552 -0.0673 7.5868 16 6 4.4342 0.9805 9.2024 17 7 5.4430 0.7928 10.0250 18 14 2.9612 1.9922 9.7467 19 1 1.9275 1.0930 10.3197 20 1 3.3881 2.9745 10.7754 21 1 2.3968 2.7134 8.5776 22 6 3.2485 -0.6174 6.0091 23 6 2.0323 -0.7105 -1.2304 24 6 2.1856 -0.1121 -2.4346 25 16 2.7788 -1.3652 -3.4546 26 7 2.7793 -2.4798 -2.3560 27 7 2.3660 -1.9847 -1.2553 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.2489 -1.6317 1.1528 32 1 2.7366 1.9560 4.0658 33 1 1.3987 1.5023 5.1637 34 1 4.3430 2.0124 5.8632 35 1 2.8749 2.6520 6.6758 36 1 1.8836 -0.3328 8.2701 37 1 5.4224 1.1800 10.9141 38 1 2.5775 -1.4124 6.3345 39 1 4.2581 -1.0090 5.8853 40 1 1.9834 0.9162 -2.6955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326167116.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = -27.177228 kcal Electronic energy + Delta-G solvation = -27164.416045 eV Core-core repulsion = 23107.821632 eV Total energy + Delta-G solvation = -4056.594413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.59648 -40.53693 -38.86970 -37.58209 -36.19911 -34.79313 -32.69945 -32.38363 -30.40498 -30.20591 -28.48037 -27.57711 -26.20156 -24.74118 -23.27706 -22.01737 -21.44252 -20.08775 -19.70484 -18.98228 -17.68889 -17.56310 -16.73879 -16.30620 -16.20788 -15.91747 -15.61642 -15.27057 -14.82137 -14.79245 -14.48266 -14.12219 -13.62854 -13.46484 -13.16075 -12.89006 -12.76474 -12.57369 -12.55600 -12.36571 -12.07852 -11.88444 -11.82801 -11.52767 -11.24115 -10.92744 -10.62030 -10.52599 -10.43817 -10.32611 -10.22916 -10.19811 -9.49363 -9.31090 -9.23892 -8.67093 -8.53600 -8.30825 -6.20228 -4.32738 -0.26468 0.59219 1.19034 1.54481 1.66379 2.36390 3.32912 3.40053 3.45361 3.52281 3.65137 3.70783 4.24181 4.38453 4.48407 4.49460 4.68486 4.74153 4.94649 5.01673 5.15388 5.26571 5.36687 5.41969 5.71586 5.75938 5.80524 5.95468 5.99262 6.19006 6.41867 6.43275 6.66507 6.75846 7.01297 7.07668 7.24236 7.41876 7.64701 7.77813 8.10429 8.17612 8.58910 8.79672 9.40514 10.88503 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.031231 B = 0.002302 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.340403 B =12159.178632 C =12511.700419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.231 3.769 3 H 0.115 0.885 4 N -0.699 5.699 5 C 0.516 3.484 6 O -0.514 6.514 7 C 0.511 3.489 8 O -0.532 6.532 9 N -0.575 5.575 10 C 0.095 3.905 11 C -0.124 4.124 12 C 0.219 3.781 13 O -0.560 6.560 14 C -0.553 4.553 15 H 0.081 0.919 16 C 0.075 3.925 17 N -0.887 5.887 18 Si 0.950 3.050 19 H -0.292 1.292 20 H -0.326 1.326 21 H -0.267 1.267 22 C 0.089 3.911 23 C 0.018 3.982 24 C -0.286 4.286 25 S 0.436 5.564 26 N -0.280 5.280 27 N -0.232 5.232 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.422 0.578 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.372 0.628 37 H 0.267 0.733 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.359 0.563 -26.970 28.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.122 3.878 3 H 0.133 0.867 4 N -0.354 5.354 5 C 0.298 3.702 6 O -0.389 6.389 7 C 0.293 3.707 8 O -0.410 6.410 9 N -0.308 5.308 10 C -0.027 4.027 11 C -0.162 4.162 12 C 0.179 3.821 13 O -0.368 6.368 14 C -0.590 4.590 15 H 0.099 0.901 16 C -0.131 4.131 17 N -0.522 5.522 18 Si 0.785 3.215 19 H -0.220 1.220 20 H -0.257 1.257 21 H -0.193 1.193 22 C -0.033 4.033 23 C -0.127 4.127 24 C -0.442 4.442 25 S 0.572 5.428 26 N -0.259 5.259 27 N -0.099 5.099 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.260 0.740 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.220 0.780 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.725 -0.328 -27.815 29.153 hybrid contribution -1.014 0.685 1.338 1.813 sum -9.739 0.357 -26.477 28.213 Atomic orbital electron populations 1.22221 0.92733 1.03394 1.03664 1.19372 0.94750 0.95653 0.77983 0.86686 1.45745 1.66038 1.15677 1.07988 1.20297 0.78502 0.86888 0.84541 1.90715 1.48220 1.15261 1.84705 1.19509 0.81010 0.86642 0.83551 1.90759 1.50547 1.15187 1.84485 1.48458 1.60819 1.12713 1.08801 1.22767 1.00071 0.79890 0.99965 1.23185 0.99882 0.99323 0.93860 1.20138 0.84136 0.90027 0.87822 1.86145 1.44977 1.39537 1.66154 1.21150 0.98606 1.40034 0.99240 0.90072 1.25123 0.97065 0.94988 0.95893 1.69965 1.31888 1.43038 1.07285 0.85675 0.80395 0.78878 0.76544 1.22006 1.25734 1.19323 1.23129 0.99886 0.98209 0.82050 1.22375 1.02670 0.90272 0.97415 1.28082 1.09551 1.09109 0.97495 1.81548 1.44766 0.94789 1.21724 1.78894 1.21124 1.25417 1.00505 1.71098 1.12028 1.10705 1.16096 0.90312 0.90927 0.91601 0.73972 0.89211 0.91233 0.89654 0.89730 0.78017 0.92361 0.91641 0.90073 0.78040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.47 37.16 0.35 -0.90 16 2 C 0.23 2.11 2.96 -69.08 -0.20 1.91 16 3 H 0.12 0.98 7.58 -51.93 -0.39 0.59 16 4 N -0.70 -8.59 5.06 -55.37 -0.28 -8.87 16 5 C 0.52 7.71 7.82 -11.59 -0.09 7.62 16 6 O -0.51 -7.99 13.44 5.50 0.07 -7.91 16 7 C 0.51 9.11 7.91 -11.59 -0.09 9.02 16 8 O -0.53 -10.50 16.80 5.49 0.09 -10.41 16 9 N -0.58 -10.69 3.33 -171.02 -0.57 -11.26 16 10 C 0.09 1.67 6.05 -2.53 -0.02 1.66 16 11 C -0.12 -2.47 5.95 -24.58 -0.15 -2.62 16 12 C 0.22 4.77 0.68 -89.94 -0.06 4.71 16 13 O -0.56 -11.83 8.49 -35.23 -0.30 -12.13 16 14 C -0.55 -14.48 8.81 -34.44 -0.30 -14.78 16 15 H 0.08 2.32 7.82 -52.49 -0.41 1.91 16 16 C 0.07 2.04 5.46 -17.82 -0.10 1.95 16 17 N -0.89 -26.07 13.96 55.43 0.77 -25.30 16 18 Si 0.95 22.98 24.89 -169.99 -4.23 18.75 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.33 -8.13 7.11 56.52 0.40 -7.73 16 21 H -0.27 -6.29 5.32 56.52 0.30 -5.99 16 22 C 0.09 1.79 6.21 -3.06 -0.02 1.77 16 23 C 0.02 0.16 5.92 -83.67 -0.50 -0.34 16 24 C -0.29 -1.55 11.36 29.70 0.34 -1.21 16 25 S 0.44 2.43 23.40 -107.50 -2.52 -0.08 16 26 N -0.28 -2.84 12.54 60.35 0.76 -2.08 16 27 N -0.23 -2.56 10.74 32.45 0.35 -2.21 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.42 5.47 7.35 -40.82 -0.30 5.17 16 32 H 0.09 1.49 6.16 -51.93 -0.32 1.17 16 33 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 34 H 0.08 1.69 8.04 -51.93 -0.42 1.27 16 35 H 0.08 1.70 6.53 -51.93 -0.34 1.36 16 36 H 0.37 6.88 8.90 45.56 0.41 7.28 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.07 1.26 7.97 -51.93 -0.41 0.85 16 39 H 0.08 1.73 7.66 -51.93 -0.40 1.33 16 40 H 0.20 0.39 8.06 -52.49 -0.42 -0.03 16 LS Contribution 347.75 15.07 5.24 5.24 Total: -1.00 -33.23 347.75 -5.38 -38.61 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -3.94 Total: 8.87 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -0.84 Total: 8.79 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 1.03 Total: -49.73 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.13 Total: -30.45 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.23 Total: 18.75 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.52 Total: -0.08 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.23 -5.38 -38.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326167116.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.438 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds