Wall clock time and date at job start Sat Apr 11 2020 05:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46997 * 2 1 4 4 N 1.46502 * 109.46817 * 119.99585 * 2 1 3 5 5 C 1.34779 * 120.00129 * 274.99784 * 4 2 1 6 6 O 1.21346 * 119.99836 * 0.02562 * 5 4 2 7 7 C 1.49443 * 119.99981 * 179.97438 * 5 4 2 8 8 O 1.21355 * 120.00033 * 0.02562 * 7 5 4 9 9 N 1.34771 * 120.00245 * 180.02562 * 7 5 4 10 10 C 1.47425 * 125.64669 * 0.04224 * 9 7 5 11 11 C 1.54916 * 104.83490 * 204.09211 * 10 9 7 12 12 C 1.55152 * 101.58040 * 322.99126 * 11 10 9 13 13 O 1.42896 * 110.72321 * 277.13824 * 12 11 10 14 14 C 1.50700 * 110.71749 * 153.86109 * 12 11 10 15 15 H 1.07999 * 119.99977 * 271.33602 * 14 12 11 16 16 C 1.37878 * 120.00030 * 91.34126 * 14 12 11 17 17 N 1.31510 * 120.00348 * 173.70385 * 16 14 12 18 18 Si 1.86803 * 119.99804 * 353.70588 * 16 14 12 19 19 H 1.48501 * 109.47017 * 87.22403 * 18 16 14 20 20 H 1.48500 * 109.47257 * 207.22583 * 18 16 14 21 21 H 1.48502 * 109.46928 * 327.22813 * 18 16 14 22 22 C 1.47029 * 125.65214 * 180.02562 * 9 7 5 23 23 C 1.50699 * 109.47056 * 239.99497 * 2 1 3 24 24 C 1.35345 * 123.76193 * 84.73061 * 23 2 1 25 25 S 1.72119 * 104.14769 * 179.89894 * 24 23 2 26 26 N 1.56511 * 95.88885 * 0.32564 * 25 24 23 27 27 N 1.27577 * 109.21679 * 359.80124 * 26 25 24 28 28 H 1.09003 * 109.47319 * 300.00311 * 1 2 3 29 29 H 1.09001 * 109.47323 * 60.00241 * 1 2 3 30 30 H 1.08997 * 109.47495 * 180.02562 * 1 2 3 31 31 H 0.96999 * 119.99864 * 94.99735 * 4 2 1 32 32 H 1.08992 * 110.36876 * 322.93649 * 10 9 7 33 33 H 1.09008 * 110.36492 * 85.14507 * 10 9 7 34 34 H 1.09000 * 111.00055 * 81.06529 * 11 10 9 35 35 H 1.08999 * 111.00175 * 204.91535 * 11 10 9 36 36 H 0.96701 * 114.00351 * 169.73880 * 13 12 11 37 37 H 0.97001 * 120.00269 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.87666 * 298.39240 * 22 9 7 39 39 H 1.08993 * 109.88269 * 59.56056 * 22 9 7 40 40 H 1.07996 * 127.92756 * 359.97438 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8580 1.1592 2.4117 7 6 2.6445 -0.7227 3.5776 8 8 2.9331 -1.9002 3.5232 9 7 2.7728 -0.0505 4.7386 10 6 2.4590 1.3751 4.9452 11 6 3.3174 1.7976 6.1636 12 6 3.2518 0.5242 7.0475 13 8 2.0508 0.5074 7.8217 14 6 4.4637 0.4306 7.9384 15 1 5.3552 -0.0673 7.5868 16 6 4.4342 0.9805 9.2024 17 7 5.4430 0.7928 10.0250 18 14 2.9612 1.9922 9.7467 19 1 1.9275 1.0930 10.3197 20 1 3.3881 2.9745 10.7754 21 1 2.3968 2.7134 8.5776 22 6 3.2485 -0.6174 6.0091 23 6 2.0323 -0.7105 -1.2304 24 6 2.1856 -0.1121 -2.4346 25 16 2.7788 -1.3652 -3.4546 26 7 2.7793 -2.4798 -2.3560 27 7 2.3660 -1.9847 -1.2553 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.2489 -1.6317 1.1528 32 1 2.7366 1.9560 4.0658 33 1 1.3987 1.5023 5.1637 34 1 4.3430 2.0124 5.8632 35 1 2.8749 2.6520 6.6758 36 1 1.8836 -0.3328 8.2701 37 1 5.4224 1.1800 10.9141 38 1 2.5775 -1.4124 6.3345 39 1 4.2581 -1.0090 5.8853 40 1 1.9834 0.9162 -2.6955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326167116.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:13 Heat of formation + Delta-G solvation = -55.461913 kcal Electronic energy + Delta-G solvation = -27165.642561 eV Core-core repulsion = 23107.821632 eV Total energy + Delta-G solvation = -4057.820929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.29562 -41.75199 -40.23793 -39.10896 -37.18165 -36.30100 -34.46243 -33.47571 -32.02581 -30.90021 -30.10569 -28.19774 -27.82041 -25.92722 -24.51108 -23.29630 -22.07661 -21.61253 -21.07165 -19.83127 -19.49964 -18.77187 -18.01265 -17.35691 -17.11196 -16.92083 -16.79486 -16.67091 -16.59397 -15.93213 -15.56204 -15.27554 -14.95201 -14.78294 -14.54365 -14.16477 -14.08791 -13.98927 -13.52675 -13.45857 -13.28079 -13.10085 -12.91770 -12.78075 -12.49948 -12.46613 -12.31777 -12.22730 -11.90717 -11.23340 -11.15333 -11.00460 -10.79552 -10.68995 -10.59929 -10.42415 -10.37720 -9.82575 -8.33667 -6.48441 -0.76064 0.14512 0.27221 0.67637 1.00426 1.22428 1.52877 1.56243 1.76995 2.04985 2.35358 2.47176 2.84841 2.97459 3.24300 3.49203 3.65523 3.79485 3.91313 4.00647 4.08814 4.18470 4.29151 4.37049 4.47283 4.60694 4.70951 4.75683 4.78096 4.89638 5.06455 5.12355 5.18813 5.20573 5.33845 5.50376 5.91931 6.05202 6.24779 6.51222 6.58077 6.69695 6.84723 6.92258 7.29719 8.79209 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.031231 B = 0.002302 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.340403 B =12159.178632 C =12511.700419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.229 3.771 3 H 0.127 0.873 4 N -0.689 5.689 5 C 0.525 3.475 6 O -0.519 6.519 7 C 0.507 3.493 8 O -0.556 6.556 9 N -0.580 5.580 10 C 0.108 3.892 11 C -0.123 4.123 12 C 0.220 3.780 13 O -0.558 6.558 14 C -0.550 4.550 15 H 0.042 0.958 16 C 0.025 3.975 17 N -0.937 5.937 18 Si 1.009 2.991 19 H -0.282 1.282 20 H -0.338 1.338 21 H -0.252 1.252 22 C 0.096 3.904 23 C -0.003 4.003 24 C -0.266 4.266 25 S 0.508 5.492 26 N -0.337 5.337 27 N -0.272 5.272 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.418 0.582 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.383 0.617 37 H 0.268 0.732 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.575 2.330 -29.781 32.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.122 3.878 3 H 0.144 0.856 4 N -0.343 5.343 5 C 0.305 3.695 6 O -0.395 6.395 7 C 0.290 3.710 8 O -0.435 6.435 9 N -0.313 5.313 10 C -0.013 4.013 11 C -0.161 4.161 12 C 0.179 3.821 13 O -0.367 6.367 14 C -0.587 4.587 15 H 0.060 0.940 16 C -0.175 4.175 17 N -0.574 5.574 18 Si 0.842 3.158 19 H -0.209 1.209 20 H -0.270 1.270 21 H -0.177 1.177 22 C -0.026 4.026 23 C -0.150 4.150 24 C -0.422 4.422 25 S 0.642 5.358 26 N -0.316 5.316 27 N -0.138 5.138 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.256 0.744 32 H 0.123 0.877 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.233 0.767 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -10.966 1.411 -30.671 32.602 hybrid contribution -0.244 0.079 2.015 2.032 sum -11.210 1.490 -28.655 30.806 Atomic orbital electron populations 1.22191 0.91580 1.03092 1.04581 1.19639 0.95618 0.95776 0.76772 0.85550 1.45810 1.64773 1.15493 1.08201 1.19636 0.78982 0.86632 0.84264 1.90706 1.49011 1.15103 1.84681 1.20133 0.80203 0.86483 0.84169 1.90744 1.51413 1.16424 1.84962 1.48469 1.61101 1.13150 1.08562 1.22720 1.00054 0.79194 0.99335 1.23105 1.00324 0.98216 0.94472 1.19944 0.82683 0.91872 0.87582 1.86094 1.43882 1.40610 1.66153 1.21355 0.99103 1.38491 0.99786 0.94007 1.25904 0.99453 0.96068 0.96058 1.70087 1.34279 1.45094 1.07951 0.84701 0.77407 0.77448 0.76207 1.20867 1.27017 1.17742 1.22803 0.99171 0.97795 0.82861 1.22353 1.04253 0.90127 0.98229 1.28572 1.06830 1.10711 0.96123 1.81243 1.42324 0.92995 1.19193 1.78579 1.23356 1.28133 1.01567 1.71094 1.13281 1.12106 1.17290 0.91420 0.87902 0.92515 0.74427 0.87709 0.90163 0.90169 0.89391 0.76669 0.92351 0.90823 0.92145 0.74156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.47 71.98 0.68 -1.35 16 2 C 0.23 3.67 2.96 44.24 0.13 3.80 16 3 H 0.13 1.75 7.58 -2.39 -0.02 1.73 16 4 N -0.69 -16.14 5.06 -447.44 -2.26 -18.40 16 5 C 0.52 14.91 7.82 87.27 0.68 15.59 16 6 O -0.52 -14.87 13.44 -3.23 -0.04 -14.91 16 7 C 0.51 17.73 7.91 87.27 0.69 18.42 16 8 O -0.56 -22.05 16.80 -3.26 -0.05 -22.11 16 9 N -0.58 -20.99 3.33 -813.35 -2.71 -23.69 16 10 C 0.11 3.57 6.05 86.86 0.53 4.10 16 11 C -0.12 -4.70 5.95 31.99 0.19 -4.51 16 12 C 0.22 9.43 0.68 -10.35 -0.01 9.43 16 13 O -0.56 -22.39 8.49 -148.98 -1.27 -23.66 16 14 C -0.55 -29.38 8.81 25.60 0.23 -29.16 16 15 H 0.04 2.51 7.82 -2.91 -0.02 2.49 16 16 C 0.03 1.40 5.46 84.66 0.46 1.86 16 17 N -0.94 -56.62 13.96 21.45 0.30 -56.33 16 18 Si 1.01 46.89 24.89 68.60 1.71 48.59 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.34 -16.28 7.11 99.48 0.71 -15.58 16 21 H -0.25 -11.01 5.32 99.48 0.53 -10.48 16 22 C 0.10 3.86 6.21 86.73 0.54 4.40 16 23 C 0.00 -0.05 5.92 41.90 0.25 0.20 16 24 C -0.27 -1.90 11.36 67.15 0.76 -1.13 16 25 S 0.51 4.35 23.40 -56.49 -1.32 3.02 16 26 N -0.34 -6.58 12.54 37.02 0.46 -6.12 16 27 N -0.27 -5.82 10.74 -51.26 -0.55 -6.37 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.42 10.76 7.35 -92.71 -0.68 10.08 16 32 H 0.10 3.20 6.16 -2.39 -0.01 3.19 16 33 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 34 H 0.08 3.12 8.04 -2.39 -0.02 3.10 16 35 H 0.09 3.32 6.53 -2.39 -0.02 3.30 16 36 H 0.38 13.43 8.90 -74.06 -0.66 12.77 16 37 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.07 2.81 7.97 -2.39 -0.02 2.79 16 39 H 0.06 2.66 7.66 -2.39 -0.02 2.64 16 40 H 0.24 -0.41 8.06 -2.91 -0.02 -0.43 16 Total: -1.00 -73.95 347.75 -1.00 -74.95 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: -0.40 Total: 23.39 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: 5.13 Total: 21.63 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -4.76 Total: -110.90 kcal Atomic # 8 Polarization: -59.32 SS G_CDS: -1.36 Total: -60.68 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.71 Total: 48.59 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.32 Total: 3.02 kcal Total: -73.95 -1.00 -74.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326167116.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.484 kcal (2) G-P(sol) polarization free energy of solvation -73.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds