Wall clock time and date at job start Sat Apr 11 2020 05:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35923 * 117.00028 * 2 1 4 4 C 1.38707 * 120.06063 * 0.02704 * 3 2 1 5 5 C 1.38152 * 119.96003 * 179.72101 * 4 3 2 6 6 C 1.38276 * 120.07315 * 0.50913 * 5 4 3 7 7 C 1.50698 * 119.94188 * 179.76560 * 6 5 4 8 8 N 1.46500 * 109.47467 * 269.72326 * 7 6 5 9 9 C 1.34773 * 120.00432 * 179.97438 * 8 7 6 10 10 O 1.21353 * 120.00047 * 0.02562 * 9 8 7 11 11 C 1.49454 * 120.00135 * 179.72278 * 9 8 7 12 12 O 1.21343 * 119.99752 * 0.28157 * 11 9 8 13 13 N 1.34777 * 120.00164 * 180.27489 * 11 9 8 14 14 C 1.46499 * 120.00065 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.46671 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.46681 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00300 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00286 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99512 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00323 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47159 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47012 * 119.99855 * 20 18 16 23 23 H 1.48503 * 109.47163 * 240.00040 * 20 18 16 24 24 C 1.38251 * 120.12304 * 359.48920 * 6 5 4 25 25 C 1.38260 * 120.03844 * 0.25270 * 24 6 5 26 26 Cl 1.73594 * 120.03905 * 179.97438 * 25 24 6 27 27 H 1.09009 * 109.47203 * 59.99743 * 1 2 3 28 28 H 1.09005 * 109.46994 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46919 * 300.00018 * 1 2 3 30 30 H 1.08002 * 120.01782 * 359.97009 * 4 3 2 31 31 H 1.08002 * 119.96376 * 180.26879 * 5 4 3 32 32 H 1.09000 * 109.47767 * 149.72034 * 7 6 5 33 33 H 1.09001 * 109.46874 * 29.72087 * 7 6 5 34 34 H 0.97001 * 119.99454 * 0.02562 * 8 7 6 35 35 H 0.97000 * 119.99555 * 0.02562 * 13 11 9 36 36 H 1.08994 * 109.46952 * 300.00262 * 14 13 11 37 37 H 1.08992 * 109.46844 * 60.00609 * 14 13 11 38 38 H 1.08994 * 109.47336 * 299.99647 * 15 14 13 39 39 H 1.08992 * 109.47300 * 60.00508 * 15 14 13 40 40 H 0.96999 * 119.99804 * 180.02562 * 19 18 16 41 41 H 1.07993 * 119.98031 * 180.23412 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2918 2.3752 0.0006 5 6 1.9212 3.6050 0.0064 6 6 3.3021 3.6768 0.0010 7 6 3.9855 5.0199 0.0021 8 7 4.2074 5.4560 -1.3788 9 6 4.8079 6.6374 -1.6242 10 8 5.1653 7.3396 -0.7013 11 6 5.0398 7.0795 -3.0329 12 8 4.6828 6.3771 -3.9557 13 7 5.6453 8.2583 -3.2782 14 6 5.8721 8.6919 -4.6591 15 6 6.5710 10.0529 -4.6579 16 6 6.8037 10.4992 -6.0784 17 1 6.4854 9.8744 -6.8998 18 6 7.4231 11.7052 -6.3294 19 7 7.8112 12.4658 -5.3292 20 14 7.7122 12.2581 -8.0901 21 1 7.1872 11.2301 -9.0243 22 1 7.0105 13.5453 -8.3263 23 1 9.1683 12.4387 -8.3195 24 6 4.0570 2.5186 0.0005 25 6 3.4323 1.2852 0.0000 26 17 4.3802 -0.1691 -0.0013 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2132 2.3201 0.0005 31 1 1.3340 4.5114 0.0112 32 1 4.9433 4.9399 0.5161 33 1 3.3569 5.7469 0.5162 34 1 3.9214 4.8949 -2.1165 35 1 5.9309 8.8196 -2.5405 36 1 6.4995 7.9620 -5.1706 37 1 4.9159 8.7745 -5.1756 38 1 5.9439 10.7830 -4.1463 39 1 7.5272 9.9699 -4.1415 40 1 8.2465 13.3144 -5.5058 41 1 5.1354 2.5773 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334697971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:18 Heat of formation + Delta-G solvation = -97.631917 kcal Electronic energy + Delta-G solvation = -25207.455547 eV Core-core repulsion = 21113.469532 eV Total energy + Delta-G solvation = -4093.986015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.88533 -40.34765 -38.62810 -38.02673 -36.84848 -35.45527 -34.64748 -32.86012 -31.46493 -31.28602 -29.82158 -28.30615 -26.65108 -25.20317 -23.35848 -23.22764 -21.78185 -21.04174 -20.23770 -18.86681 -18.41563 -17.11343 -16.86329 -16.39900 -16.30632 -16.21407 -15.83121 -15.35721 -14.99776 -14.80332 -14.55520 -14.51239 -14.36422 -14.11754 -13.71976 -13.40785 -13.20375 -12.71916 -12.56630 -12.33637 -12.26013 -12.00411 -11.69502 -11.64042 -11.47374 -11.23344 -11.21854 -11.08067 -10.65511 -10.41259 -9.81424 -9.50247 -9.44008 -9.39197 -9.21595 -8.70362 -8.69123 -8.42548 -6.10743 -4.14280 0.59350 0.63306 1.59404 1.75030 2.50091 2.62880 3.09250 3.27677 3.35413 3.40006 3.41392 3.94476 4.10308 4.16220 4.32952 4.40159 4.59910 4.61294 4.68190 4.73988 4.76019 4.96320 5.01908 5.26295 5.26829 5.29975 5.43835 5.59431 5.92463 6.00355 6.05794 6.17619 6.23441 6.58970 6.66620 6.68825 7.02110 7.46052 7.57391 7.64604 7.86798 7.90523 8.20543 8.33408 8.91586 9.50711 11.00757 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.023917 B = 0.001633 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.418591 B =17142.055469 C =17222.578493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.305 6.305 3 C 0.146 3.854 4 C -0.200 4.200 5 C -0.051 4.051 6 C -0.136 4.136 7 C 0.165 3.835 8 N -0.704 5.704 9 C 0.509 3.491 10 O -0.519 6.519 11 C 0.497 3.503 12 O -0.533 6.533 13 N -0.686 5.686 14 C 0.119 3.881 15 C 0.010 3.990 16 C -0.523 4.523 17 H 0.061 0.939 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.050 4.050 25 C -0.072 4.072 26 Cl -0.053 7.053 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.140 0.860 31 H 0.136 0.864 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.414 0.586 35 H 0.411 0.589 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.262 0.738 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.986 -24.759 15.625 32.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.217 6.217 3 C 0.099 3.901 4 C -0.219 4.219 5 C -0.070 4.070 6 C -0.137 4.137 7 C 0.042 3.958 8 N -0.358 5.358 9 C 0.290 3.710 10 O -0.394 6.394 11 C 0.277 3.723 12 O -0.411 6.411 13 N -0.337 5.337 14 C -0.003 4.003 15 C -0.027 4.027 16 C -0.562 4.562 17 H 0.079 0.921 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.069 4.069 25 C -0.099 4.099 26 Cl -0.025 7.025 27 H 0.078 0.922 28 H 0.122 0.878 29 H 0.077 0.923 30 H 0.158 0.842 31 H 0.154 0.846 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.250 0.750 35 H 0.246 0.754 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.716 -24.886 15.660 32.880 hybrid contribution -0.009 0.368 -0.871 0.945 sum -14.725 -24.518 14.789 32.198 Atomic orbital electron populations 1.23165 0.77695 1.04516 1.01673 1.86176 1.21839 1.25791 1.87918 1.18765 0.90553 0.85315 0.95501 1.21227 1.00510 0.91464 1.08649 1.21033 0.93741 0.97661 0.94553 1.19677 0.93628 0.94277 1.06073 1.20200 1.00844 0.91526 0.83215 1.45848 1.60229 1.20625 1.09133 1.20486 0.78485 0.81808 0.90262 1.90767 1.49187 1.53669 1.45786 1.19951 0.80475 0.83267 0.88658 1.90735 1.50927 1.54051 1.45367 1.46236 1.56488 1.19046 1.11897 1.21936 1.00719 0.99093 0.78546 1.19366 0.95857 0.89090 0.98423 1.21054 1.39151 1.04277 0.91669 0.92107 1.25006 0.95355 0.96510 0.97438 1.69969 1.40178 1.12159 1.30730 0.86442 0.77906 0.78618 0.84503 1.19589 1.20935 1.20919 1.20905 1.00872 0.89160 0.95995 1.20150 0.88812 0.89101 1.11856 1.98382 1.71359 1.35654 1.97063 0.92208 0.87782 0.92295 0.84219 0.84567 0.89812 0.89760 0.74957 0.75371 0.91846 0.91857 0.95639 0.95625 0.92832 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.30 -2.36 9.96 -19.50 -0.19 -2.56 16 3 C 0.15 1.18 6.68 -39.19 -0.26 0.91 16 4 C -0.20 -1.26 9.04 -39.44 -0.36 -1.62 16 5 C -0.05 -0.33 9.69 -39.60 -0.38 -0.71 16 6 C -0.14 -1.00 5.25 -104.60 -0.55 -1.55 16 7 C 0.16 1.38 5.80 -5.19 -0.03 1.35 16 8 N -0.70 -7.57 5.54 -61.91 -0.34 -7.91 16 9 C 0.51 7.25 7.89 -11.59 -0.09 7.16 16 10 O -0.52 -8.36 16.48 5.49 0.09 -8.27 16 11 C 0.50 8.36 7.89 -11.58 -0.09 8.27 16 12 O -0.53 -9.93 16.48 5.50 0.09 -9.84 16 13 N -0.69 -12.30 5.55 -60.73 -0.34 -12.64 16 14 C 0.12 2.46 5.61 -4.04 -0.02 2.43 16 15 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 16 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 20 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C -0.05 -0.39 9.48 -39.57 -0.38 -0.77 16 25 C -0.07 -0.63 6.33 -39.36 -0.25 -0.88 16 26 Cl -0.05 -0.49 28.50 -51.86 -1.48 -1.97 16 27 H 0.06 0.17 7.66 -51.92 -0.40 -0.22 16 28 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.15 7.66 -51.93 -0.40 -0.25 16 30 H 0.14 0.56 6.30 -52.49 -0.33 0.23 16 31 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.41 4.24 7.94 -40.82 -0.32 3.91 16 35 H 0.41 7.00 7.94 -40.82 -0.32 6.68 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -32.50 376.32 -7.87 -40.37 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.11 Total: 3.49 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.97 Total: 2.72 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.06 Total: -45.80 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.01 Total: -20.67 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.48 Total: -1.97 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.50 -7.87 -40.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334697971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.261 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds