Wall clock time and date at job start Sat Apr 11 2020 05:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35923 * 117.00028 * 2 1 4 4 C 1.38707 * 120.06063 * 0.02704 * 3 2 1 5 5 C 1.38152 * 119.96003 * 179.72101 * 4 3 2 6 6 C 1.38276 * 120.07315 * 0.50913 * 5 4 3 7 7 C 1.50698 * 119.94188 * 179.76560 * 6 5 4 8 8 N 1.46500 * 109.47467 * 269.72326 * 7 6 5 9 9 C 1.34773 * 120.00432 * 179.97438 * 8 7 6 10 10 O 1.21353 * 120.00047 * 0.02562 * 9 8 7 11 11 C 1.49454 * 120.00135 * 179.72278 * 9 8 7 12 12 O 1.21343 * 119.99752 * 0.28157 * 11 9 8 13 13 N 1.34777 * 120.00164 * 180.27489 * 11 9 8 14 14 C 1.46499 * 120.00065 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.46671 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.46681 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00300 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00286 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99512 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00323 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47159 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47012 * 119.99855 * 20 18 16 23 23 H 1.48503 * 109.47163 * 240.00040 * 20 18 16 24 24 C 1.38251 * 120.12304 * 359.48920 * 6 5 4 25 25 C 1.38260 * 120.03844 * 0.25270 * 24 6 5 26 26 Cl 1.73594 * 120.03905 * 179.97438 * 25 24 6 27 27 H 1.09009 * 109.47203 * 59.99743 * 1 2 3 28 28 H 1.09005 * 109.46994 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46919 * 300.00018 * 1 2 3 30 30 H 1.08002 * 120.01782 * 359.97009 * 4 3 2 31 31 H 1.08002 * 119.96376 * 180.26879 * 5 4 3 32 32 H 1.09000 * 109.47767 * 149.72034 * 7 6 5 33 33 H 1.09001 * 109.46874 * 29.72087 * 7 6 5 34 34 H 0.97001 * 119.99454 * 0.02562 * 8 7 6 35 35 H 0.97000 * 119.99555 * 0.02562 * 13 11 9 36 36 H 1.08994 * 109.46952 * 300.00262 * 14 13 11 37 37 H 1.08992 * 109.46844 * 60.00609 * 14 13 11 38 38 H 1.08994 * 109.47336 * 299.99647 * 15 14 13 39 39 H 1.08992 * 109.47300 * 60.00508 * 15 14 13 40 40 H 0.96999 * 119.99804 * 180.02562 * 19 18 16 41 41 H 1.07993 * 119.98031 * 180.23412 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2918 2.3752 0.0006 5 6 1.9212 3.6050 0.0064 6 6 3.3021 3.6768 0.0010 7 6 3.9855 5.0199 0.0021 8 7 4.2074 5.4560 -1.3788 9 6 4.8079 6.6374 -1.6242 10 8 5.1653 7.3396 -0.7013 11 6 5.0398 7.0795 -3.0329 12 8 4.6828 6.3771 -3.9557 13 7 5.6453 8.2583 -3.2782 14 6 5.8721 8.6919 -4.6591 15 6 6.5710 10.0529 -4.6579 16 6 6.8037 10.4992 -6.0784 17 1 6.4854 9.8744 -6.8998 18 6 7.4231 11.7052 -6.3294 19 7 7.8112 12.4658 -5.3292 20 14 7.7122 12.2581 -8.0901 21 1 7.1872 11.2301 -9.0243 22 1 7.0105 13.5453 -8.3263 23 1 9.1683 12.4387 -8.3195 24 6 4.0570 2.5186 0.0005 25 6 3.4323 1.2852 0.0000 26 17 4.3802 -0.1691 -0.0013 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2132 2.3201 0.0005 31 1 1.3340 4.5114 0.0112 32 1 4.9433 4.9399 0.5161 33 1 3.3569 5.7469 0.5162 34 1 3.9214 4.8949 -2.1165 35 1 5.9309 8.8196 -2.5405 36 1 6.4995 7.9620 -5.1706 37 1 4.9159 8.7745 -5.1756 38 1 5.9439 10.7830 -4.1463 39 1 7.5272 9.9699 -4.1415 40 1 8.2465 13.3144 -5.5058 41 1 5.1354 2.5773 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334697971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:17 Heat of formation + Delta-G solvation = -120.294659 kcal Electronic energy + Delta-G solvation = -25208.438278 eV Core-core repulsion = 21113.469532 eV Total energy + Delta-G solvation = -4094.968745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.75099 -41.23878 -39.70441 -38.80677 -37.50383 -36.88794 -35.80620 -34.78226 -31.99937 -31.96978 -31.66646 -28.79135 -27.67589 -26.65333 -24.63965 -23.82321 -22.82766 -22.37948 -21.46926 -19.76860 -19.25471 -18.57223 -17.83393 -17.67217 -17.08972 -16.99053 -16.80091 -16.49128 -16.47549 -15.95145 -15.87476 -15.37432 -14.99944 -14.97446 -14.75149 -14.53315 -14.31178 -14.19103 -13.64416 -13.24280 -13.03589 -12.95676 -12.87344 -12.80375 -12.54736 -12.50566 -12.28432 -12.12392 -12.06477 -11.84035 -11.67739 -11.40913 -10.72285 -10.61423 -10.36337 -10.18019 -9.97596 -9.27076 -8.22896 -6.33817 0.02641 0.08546 0.34250 1.13876 1.38287 1.42870 1.44921 1.57154 2.14282 2.20909 2.37992 2.45665 2.83994 3.12195 3.46708 3.51101 3.69212 3.88139 4.10213 4.18351 4.36516 4.40089 4.40319 4.46589 4.49733 4.61803 4.74945 4.75802 4.82706 4.88990 5.07658 5.09814 5.10709 5.37321 5.43749 5.52711 5.56301 5.76564 5.93748 6.14002 6.21804 6.36838 6.71313 6.80719 6.94634 7.35728 8.89248 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.023917 B = 0.001633 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.418591 B =17142.055469 C =17222.578493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.138 3.862 4 C -0.197 4.197 5 C -0.047 4.047 6 C -0.138 4.138 7 C 0.166 3.834 8 N -0.685 5.685 9 C 0.517 3.483 10 O -0.539 6.539 11 C 0.499 3.501 12 O -0.550 6.550 13 N -0.689 5.689 14 C 0.138 3.862 15 C 0.017 3.983 16 C -0.544 4.544 17 H 0.064 0.936 18 C 0.005 3.995 19 N -0.927 5.927 20 Si 0.967 3.033 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.279 1.279 24 C -0.054 4.054 25 C -0.093 4.093 26 Cl -0.067 7.067 27 H 0.069 0.931 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.165 0.835 31 H 0.157 0.843 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.418 0.582 35 H 0.415 0.585 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.009 0.991 39 H 0.008 0.992 40 H 0.265 0.735 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.475 -25.371 15.477 33.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.091 3.909 4 C -0.215 4.215 5 C -0.066 4.066 6 C -0.139 4.139 7 C 0.044 3.956 8 N -0.338 5.338 9 C 0.297 3.703 10 O -0.416 6.416 11 C 0.280 3.720 12 O -0.429 6.429 13 N -0.340 5.340 14 C 0.015 3.985 15 C -0.020 4.020 16 C -0.582 4.582 17 H 0.083 0.917 18 C -0.194 4.194 19 N -0.567 5.567 20 Si 0.792 3.208 21 H -0.186 1.186 22 H -0.204 1.204 23 H -0.204 1.204 24 C -0.073 4.073 25 C -0.120 4.120 26 Cl -0.038 7.038 27 H 0.088 0.912 28 H 0.135 0.865 29 H 0.091 0.909 30 H 0.183 0.817 31 H 0.174 0.826 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.256 0.744 35 H 0.251 0.749 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.027 0.973 39 H 0.026 0.974 40 H 0.074 0.926 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.235 -25.546 15.529 34.019 hybrid contribution 0.366 0.463 -0.768 0.968 sum -15.869 -25.083 14.761 33.149 Atomic orbital electron populations 1.23446 0.75774 1.05895 1.02778 1.86155 1.23926 1.25932 1.87816 1.18977 0.90529 0.86103 0.95314 1.21501 1.01716 0.90688 1.07632 1.21301 0.93440 0.98557 0.93256 1.19565 0.94059 0.93348 1.06973 1.20349 1.01453 0.92273 0.81513 1.45851 1.58259 1.19084 1.10601 1.19887 0.79178 0.82743 0.88465 1.90771 1.50601 1.54577 1.45650 1.20382 0.79364 0.82360 0.89905 1.90724 1.51417 1.54364 1.46376 1.46069 1.57205 1.19885 1.10832 1.21467 0.99989 0.96862 0.80171 1.19189 0.95010 0.90810 0.97004 1.21485 1.39116 1.04666 0.92963 0.91738 1.25910 0.95037 0.96639 1.01815 1.70082 1.40968 1.12659 1.32996 0.85357 0.77875 0.78277 0.79287 1.18649 1.20380 1.20433 1.20984 1.01236 0.89168 0.95903 1.20336 0.89356 0.88904 1.13387 1.98369 1.71737 1.36458 1.97214 0.91228 0.86459 0.90947 0.81739 0.82563 0.89519 0.88668 0.74437 0.74875 0.92120 0.91997 0.97293 0.97369 0.92597 0.83481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.20 16 2 O -0.33 -4.67 9.96 -92.68 -0.92 -5.60 16 3 C 0.14 2.04 6.68 22.52 0.15 2.19 16 4 C -0.20 -2.01 9.04 22.36 0.20 -1.81 16 5 C -0.05 -0.48 9.69 22.26 0.22 -0.26 16 6 C -0.14 -1.77 5.25 -19.85 -0.10 -1.88 16 7 C 0.17 2.43 5.80 85.63 0.50 2.93 16 8 N -0.68 -13.52 5.54 -468.14 -2.59 -16.11 16 9 C 0.52 14.11 7.89 87.27 0.69 14.79 16 10 O -0.54 -16.76 16.48 -3.26 -0.05 -16.81 16 11 C 0.50 16.42 7.89 87.27 0.69 17.10 16 12 O -0.55 -19.98 16.48 -3.23 -0.05 -20.04 16 13 N -0.69 -24.62 5.55 -464.43 -2.58 -27.19 16 14 C 0.14 5.72 5.61 86.38 0.48 6.21 16 15 C 0.02 0.87 5.09 29.85 0.15 1.02 16 16 C -0.54 -29.90 9.11 25.60 0.23 -29.67 16 17 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 18 C 0.00 0.26 5.46 84.66 0.46 0.72 16 19 N -0.93 -54.53 13.29 21.45 0.28 -54.25 16 20 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 21 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 24 C -0.05 -0.79 9.48 22.28 0.21 -0.58 16 25 C -0.09 -1.56 6.33 22.41 0.14 -1.42 16 26 Cl -0.07 -1.22 28.50 -2.72 -0.08 -1.30 16 27 H 0.07 0.24 7.66 -2.38 -0.02 0.23 16 28 H 0.12 0.30 8.14 -2.38 -0.02 0.28 16 29 H 0.07 0.20 7.66 -2.39 -0.02 0.18 16 30 H 0.17 0.77 6.30 -2.91 -0.02 0.76 16 31 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 32 H 0.09 1.29 8.08 -2.39 -0.02 1.27 16 33 H 0.10 1.27 8.08 -2.39 -0.02 1.25 16 34 H 0.42 7.79 7.94 -92.71 -0.74 7.06 16 35 H 0.41 14.23 7.94 -92.71 -0.74 13.49 16 36 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 41 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -69.13 376.32 0.79 -68.35 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -0.38 Total: 17.11 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 5.14 Total: 10.56 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -4.89 Total: -97.56 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -1.03 Total: -42.44 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -69.13 0.79 -68.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334697971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.949 kcal (2) G-P(sol) polarization free energy of solvation -69.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds