Wall clock time and date at job start Sat Apr 11 2020 05:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35953 * 116.99810 * 2 1 4 4 C 1.38672 * 120.40974 * 359.97438 * 3 2 1 5 5 N 1.31930 * 120.88196 * 180.02562 * 4 3 2 6 6 C 1.31917 * 121.81645 * 0.02562 * 5 4 3 7 7 F 1.35099 * 119.64344 * 179.97438 * 6 5 4 8 8 C 1.39233 * 120.71716 * 359.97438 * 6 5 4 9 9 N 1.39831 * 120.46774 * 180.02562 * 8 6 5 10 10 C 1.34783 * 119.99480 * 204.58697 * 9 8 6 11 11 O 1.21379 * 120.00398 * 5.58420 * 10 9 8 12 12 C 1.49342 * 119.99671 * 185.59127 * 10 9 8 13 13 O 1.21360 * 120.00448 * 359.97438 * 12 10 9 14 14 N 1.34783 * 120.00095 * 180.02562 * 12 10 9 15 15 C 1.46500 * 120.00208 * 179.97438 * 14 12 10 16 16 C 1.50698 * 109.46807 * 180.02562 * 15 14 12 17 17 O 1.21294 * 120.00481 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99953 * 180.02562 * 16 15 14 19 19 C 1.37089 * 120.00256 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00331 * 0.02562 * 19 18 16 21 21 C 1.38957 * 120.00157 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99607 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00125 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47790 * 89.99434 * 23 21 19 25 25 H 1.48501 * 109.47229 * 210.00080 * 23 21 19 26 26 H 1.48499 * 109.47195 * 329.99644 * 23 21 19 27 27 C 1.39023 * 120.40313 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47242 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47234 * 300.00345 * 1 2 3 30 30 H 1.09003 * 109.46858 * 60.00107 * 1 2 3 31 31 H 1.08009 * 119.56235 * 359.74708 * 4 3 2 32 32 H 0.96994 * 120.00619 * 24.58534 * 9 8 6 33 33 H 0.96997 * 119.99484 * 359.97438 * 14 12 10 34 34 H 1.09001 * 109.46639 * 299.99900 * 15 14 12 35 35 H 1.09000 * 109.46869 * 59.99758 * 15 14 12 36 36 H 0.97004 * 119.99424 * 359.97438 * 18 16 15 37 37 H 0.97000 * 119.99696 * 180.02562 * 22 21 19 38 38 H 1.07998 * 120.82920 * 359.94949 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2993 2.3797 -0.0005 5 7 1.8885 3.5601 -0.0010 6 6 3.2020 3.6818 -0.0016 7 9 3.7591 4.9126 -0.0026 8 6 4.0205 2.5555 -0.0011 9 7 5.4123 2.6905 -0.0011 10 6 6.1855 1.6988 -0.4863 11 8 5.6737 0.7336 -1.0153 12 6 7.6719 1.7875 -0.3731 13 8 8.1838 2.7526 0.1555 14 7 8.4452 0.7961 -0.8587 15 6 9.9034 0.8833 -0.7481 16 6 10.5280 -0.3421 -1.3639 17 8 9.8244 -1.2038 -1.8472 18 7 11.8686 -0.4811 -1.3767 19 6 12.4368 -1.5960 -1.9364 20 1 11.8104 -2.3629 -2.3675 21 6 13.8189 -1.7396 -1.9491 22 7 14.5812 -0.8062 -1.4251 23 14 14.5932 -3.2585 -2.7124 24 1 14.8545 -3.0103 -4.1530 25 1 15.8726 -3.5618 -2.0223 26 1 13.6680 -4.4111 -2.5687 27 6 3.4340 1.2939 -0.0005 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2207 2.3226 -0.0051 32 1 5.8214 3.4977 0.3480 33 1 8.0361 0.0249 -1.2815 34 1 10.2549 1.7722 -1.2720 35 1 10.1849 0.9460 0.3030 36 1 12.4312 0.2079 -0.9899 37 1 15.5459 -0.9062 -1.4343 38 1 4.0416 0.4011 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335284155.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:22 Heat of formation + Delta-G solvation = -130.245936 kcal Electronic energy + Delta-G solvation = -27879.498573 eV Core-core repulsion = 23252.221589 eV Total energy + Delta-G solvation = -4627.276984 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.106 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.33597 -41.63129 -40.66004 -39.21298 -38.42142 -38.09725 -35.93793 -34.60357 -33.83124 -32.22452 -31.46464 -30.15619 -28.43027 -27.96684 -25.64498 -24.69570 -23.95842 -22.69703 -20.63911 -19.95113 -19.43926 -18.67603 -18.41646 -18.14735 -17.71594 -17.20788 -16.77978 -16.36495 -16.18478 -16.01533 -15.50481 -15.42374 -15.20233 -14.92724 -14.70010 -14.40088 -14.13639 -13.88246 -13.67961 -13.58157 -13.54240 -13.37790 -12.52170 -12.34717 -12.13615 -11.96573 -11.87972 -11.71445 -11.67637 -11.16853 -10.49779 -10.47815 -10.36233 -9.80955 -9.70010 -9.39118 -9.19655 -8.73955 -8.64407 -8.17205 -6.57609 -3.99706 0.22210 0.60773 1.23672 1.84022 2.57366 2.87871 3.06817 3.08061 3.16307 3.19490 3.24121 3.33803 3.64412 3.87681 4.04197 4.12599 4.27240 4.41067 4.59081 4.64110 4.68541 4.71869 5.01816 5.10138 5.25543 5.31337 5.55990 5.65661 5.74874 5.90142 5.98200 6.24029 6.47856 6.63843 7.06757 7.11585 7.40867 7.43992 7.80352 7.91164 8.37142 8.98218 9.30761 9.78257 10.58998 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.021591 B = 0.001962 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.534857 B =14269.593674 C =15446.382418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.301 6.301 3 C 0.098 3.902 4 C 0.030 3.970 5 N -0.453 5.453 6 C 0.247 3.753 7 F -0.108 7.108 8 C 0.127 3.873 9 N -0.638 5.638 10 C 0.514 3.486 11 O -0.483 6.483 12 C 0.509 3.491 13 O -0.522 6.522 14 N -0.667 5.667 15 C 0.105 3.895 16 C 0.424 3.576 17 O -0.593 6.593 18 N -0.545 5.545 19 C -0.306 4.306 20 H 0.107 0.893 21 C 0.026 3.974 22 N -0.893 5.893 23 Si 0.934 3.066 24 H -0.276 1.276 25 H -0.282 1.282 26 H -0.268 1.268 27 C -0.101 4.101 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.172 0.828 32 H 0.432 0.568 33 H 0.425 0.575 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.396 0.604 37 H 0.275 0.725 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.415 7.160 5.299 25.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.212 6.212 3 C 0.049 3.951 4 C -0.129 4.129 5 N -0.167 5.167 6 C 0.089 3.911 7 F -0.087 7.087 8 C 0.028 3.972 9 N -0.285 5.285 10 C 0.297 3.703 11 O -0.355 6.355 12 C 0.287 3.713 13 O -0.399 6.399 14 N -0.322 5.322 15 C -0.022 4.022 16 C 0.209 3.791 17 O -0.479 6.479 18 N -0.180 5.180 19 C -0.435 4.435 20 H 0.124 0.876 21 C -0.177 4.177 22 N -0.533 5.533 23 Si 0.761 3.239 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.193 1.193 27 C -0.129 4.129 28 H 0.126 0.874 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.189 0.811 32 H 0.272 0.728 33 H 0.265 0.735 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.230 0.770 37 H 0.085 0.915 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -24.922 7.111 4.979 26.391 hybrid contribution 1.187 -0.479 -0.147 1.289 sum -23.735 6.632 4.832 25.113 Atomic orbital electron populations 1.23229 0.77430 1.04951 1.01794 1.86167 1.21987 1.25083 1.87983 1.19791 0.92299 0.86042 0.96964 1.22612 1.00620 0.85341 1.04286 1.66866 1.09066 1.28392 1.12335 1.17615 0.87572 0.79550 1.06368 1.91633 1.83463 1.39674 1.93929 1.18134 0.83633 0.92985 1.02495 1.43032 1.03081 1.22038 1.60388 1.20534 0.88805 0.82729 0.78261 1.90793 1.74664 1.30911 1.39132 1.19466 0.86559 0.84160 0.81090 1.90796 1.74370 1.31545 1.43214 1.45497 1.07001 1.22762 1.56905 1.21172 0.78755 0.99459 1.02764 1.19604 0.83771 0.88693 0.87007 1.90540 1.61216 1.43975 1.52184 1.41771 1.04295 1.20987 1.50943 1.19745 0.90327 0.98572 1.34868 0.87553 1.25344 0.96167 0.99020 0.97146 1.69608 1.05866 1.33770 1.44047 0.85790 0.78362 0.80887 0.78885 1.20209 1.20768 1.19254 1.21031 0.92424 0.97941 1.01514 0.87441 0.92058 0.92034 0.81063 0.72801 0.73480 0.88891 0.88884 0.76981 0.91504 0.80604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.82 101.05 0.99 1.07 16 2 O -0.30 -2.51 10.51 -19.59 -0.21 -2.71 16 3 C 0.10 0.90 6.70 -39.13 -0.26 0.64 16 4 C 0.03 0.25 10.21 -17.35 -0.18 0.07 16 5 N -0.45 -4.82 10.36 -13.30 -0.14 -4.96 16 6 C 0.25 2.72 8.43 -17.15 -0.14 2.57 16 7 F -0.11 -1.19 16.84 2.25 0.04 -1.15 16 8 C 0.13 1.39 6.46 -83.51 -0.54 0.85 16 9 N -0.64 -6.92 5.30 -10.15 -0.05 -6.97 16 10 C 0.51 6.65 7.71 -11.63 -0.09 6.56 16 11 O -0.48 -7.02 13.67 5.47 0.07 -6.95 16 12 C 0.51 7.33 7.89 -11.63 -0.09 7.24 16 13 O -0.52 -8.09 16.48 5.49 0.09 -8.00 16 14 N -0.67 -10.60 5.52 -61.94 -0.34 -10.94 16 15 C 0.11 1.78 6.15 -5.19 -0.03 1.75 16 16 C 0.42 9.31 7.85 -10.99 -0.09 9.23 16 17 O -0.59 -14.88 15.24 5.55 0.08 -14.80 16 18 N -0.55 -13.00 5.29 -10.96 -0.06 -13.06 16 19 C -0.31 -8.10 9.68 -14.93 -0.14 -8.25 16 20 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 21 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 22 N -0.89 -23.22 13.05 55.50 0.72 -22.50 16 23 Si 0.93 20.17 29.55 -169.99 -5.02 15.14 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 27 C -0.10 -1.10 8.77 -38.96 -0.34 -1.44 16 28 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.14 7.68 -51.93 -0.40 -0.26 16 30 H 0.06 0.16 7.67 -51.93 -0.40 -0.24 16 31 H 0.17 0.83 6.30 -52.48 -0.33 0.50 16 32 H 0.43 4.07 7.94 -40.82 -0.32 3.74 16 33 H 0.42 7.16 6.91 -40.82 -0.28 6.88 16 34 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 36 H 0.40 8.98 7.90 -40.82 -0.32 8.66 16 37 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 38 H 0.18 2.09 5.88 -52.49 -0.31 1.78 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -31.60 348.48 -3.71 -35.32 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -3.14 Total: 15.46 kcal Atomic # 6 Polarization: 21.89 SS G_CDS: -1.01 Total: 20.88 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.13 Total: -58.43 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: 0.04 Total: -32.46 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.60 -3.71 -35.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335284155.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.931 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds