Wall clock time and date at job start Sat Apr 11 2020 05:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.87295 * 2 1 4 4 C 1.54332 * 109.88326 * 121.17313 * 2 1 3 5 5 C 1.55155 * 102.93967 * 141.61191 * 4 2 1 6 6 H 1.09000 * 111.04118 * 82.58942 * 5 4 2 7 7 N 1.46503 * 111.00376 * 206.42474 * 5 4 2 8 8 C 1.34772 * 120.00135 * 198.64921 * 7 5 4 9 9 O 1.21500 * 120.00121 * 0.02562 * 8 7 5 10 10 C 1.48283 * 119.99869 * 179.97438 * 8 7 5 11 11 C 1.47487 * 128.70716 * 179.97438 * 10 8 7 12 12 N 1.30650 * 102.71562 * 179.74414 * 11 10 8 13 13 O 1.20837 * 109.61624 * 0.26176 * 12 11 10 14 14 N 1.20902 * 115.90879 * 0.02562 * 13 12 11 15 15 C 1.54909 * 101.58379 * 324.50050 * 5 4 2 16 16 N 1.47023 * 109.88411 * 238.98511 * 2 1 3 17 17 C 1.34767 * 125.64935 * 61.67510 * 16 2 1 18 18 O 1.21284 * 119.99839 * 359.97438 * 17 16 2 19 19 C 1.50699 * 120.00310 * 179.97438 * 17 16 2 20 20 S 1.80999 * 109.47605 * 180.02562 * 19 17 16 21 21 C 1.76191 * 100.00117 * 180.02562 * 20 19 17 22 22 H 1.08003 * 120.00278 * 359.97438 * 21 20 19 23 23 C 1.38801 * 120.00017 * 180.02562 * 21 20 19 24 24 N 1.31630 * 119.99729 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00062 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47343 * 89.99879 * 25 23 21 27 27 H 1.48504 * 109.47058 * 209.99596 * 25 23 21 28 28 H 1.48507 * 109.47069 * 329.99266 * 25 23 21 29 29 H 1.09002 * 109.46928 * 179.56242 * 1 2 3 30 30 H 1.09005 * 109.47249 * 299.55832 * 1 2 3 31 31 H 1.08994 * 109.47342 * 59.56166 * 1 2 3 32 32 H 1.09003 * 110.71670 * 23.24690 * 4 2 1 33 33 H 1.08997 * 110.71784 * 259.97920 * 4 2 1 34 34 H 0.97001 * 119.99661 * 18.65220 * 7 5 4 35 35 H 1.08002 * 128.64765 * 0.02562 * 11 10 8 36 36 H 1.08998 * 110.37118 * 155.85117 * 15 5 4 37 37 H 1.09006 * 110.36741 * 278.06403 * 15 5 4 38 38 H 1.09002 * 109.47079 * 300.00030 * 19 17 16 39 39 H 1.09000 * 109.47274 * 59.99987 * 19 17 16 40 40 H 0.97002 * 119.99811 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7512 1.2418 5 6 3.2876 -1.5151 0.6903 6 1 4.1659 -0.8703 0.6592 7 7 3.5532 -2.7216 1.4779 8 6 4.7624 -3.3136 1.4168 9 8 5.6325 -2.8465 0.7089 10 6 5.0314 -4.5343 2.2144 11 6 6.2704 -5.3306 2.2925 12 7 5.9520 -6.2758 3.1365 13 8 4.8088 -6.1280 3.4987 14 7 4.2234 -5.1811 3.0271 15 6 2.8146 -1.8783 -0.7394 16 7 2.0300 -0.7124 -1.1849 17 6 1.8086 -0.3579 -2.4661 18 8 1.1451 0.6259 -2.7170 19 6 2.3853 -1.1837 -3.5870 20 16 1.9159 -0.4556 -5.1763 21 6 2.6994 -1.5884 -6.2750 22 1 3.2595 -2.4235 -5.8808 23 6 2.5977 -1.4071 -7.6474 24 7 1.9155 -0.3890 -8.1279 25 14 3.4277 -2.6084 -8.8124 26 1 2.4879 -3.7110 -9.1388 27 1 3.8138 -1.9015 -10.0600 28 1 4.6413 -3.1678 -8.1646 29 1 -0.3633 -1.0277 -0.0078 30 1 -0.3634 0.5070 0.8940 31 1 -0.3634 0.5206 -0.8860 32 1 1.3051 -1.4482 1.6163 33 1 2.3528 -0.0487 2.0201 34 1 2.8587 -3.0943 2.0433 35 1 7.2089 -5.1697 1.7828 36 1 3.6716 -2.0318 -1.3951 37 1 2.1902 -2.7716 -0.7169 38 1 3.4719 -1.2020 -3.5029 39 1 1.9989 -2.2010 -3.5248 40 1 1.8441 -0.2625 -9.0870 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338035381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:32 Heat of formation + Delta-G solvation = 54.621414 kcal Electronic energy + Delta-G solvation = -26338.015932 eV Core-core repulsion = 22284.968574 eV Total energy + Delta-G solvation = -4053.047358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -47.46158 -40.77038 -39.64481 -37.47762 -35.42762 -35.03049 -34.66458 -32.43312 -32.26471 -30.40831 -28.76198 -26.69276 -26.02879 -25.48546 -24.64910 -22.92581 -21.62328 -21.26879 -19.57550 -19.23556 -18.94416 -18.15121 -17.69083 -17.08853 -16.77970 -15.83689 -15.57209 -15.33764 -14.95373 -14.80459 -14.62481 -14.38545 -13.87610 -13.75585 -13.37960 -13.17381 -13.12409 -12.66486 -12.62374 -12.47625 -12.13834 -12.06333 -11.89159 -11.77925 -11.34153 -11.28003 -11.14492 -11.06129 -11.02048 -10.93024 -10.76257 -9.90178 -9.81018 -9.37245 -9.06912 -8.61481 -8.24907 -6.51071 -6.22098 -3.92774 0.16846 0.79617 1.95984 2.34656 2.76061 2.89361 2.95342 3.01916 3.22342 3.25040 3.30037 3.37298 3.59973 3.95942 4.17851 4.19988 4.21552 4.29273 4.51203 4.78632 4.82356 4.89508 4.99911 5.13174 5.24639 5.29015 5.38014 5.42724 5.49531 5.54158 5.60934 5.80961 5.87804 5.95825 6.12402 6.19741 6.44135 6.67783 7.34432 7.57006 7.59867 7.84752 8.35041 8.50441 9.23361 10.85351 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010885 B = 0.002663 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.835793 B =10513.070772 C =12689.901907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.081 0.919 4 C -0.132 4.132 5 C 0.132 3.868 6 H 0.113 0.887 7 N -0.700 5.700 8 C 0.608 3.392 9 O -0.501 6.501 10 C -0.042 4.042 11 C 0.041 3.959 12 N -0.351 5.351 13 O 0.344 5.656 14 N -0.321 5.321 15 C 0.091 3.909 16 N -0.621 5.621 17 C 0.552 3.448 18 O -0.510 6.510 19 C -0.149 4.149 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.411 0.589 35 H 0.229 0.771 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.266 -7.841 26.776 28.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.034 3.966 3 H 0.099 0.901 4 C -0.171 4.171 5 C 0.027 3.973 6 H 0.131 0.869 7 N -0.353 5.353 8 C 0.390 3.610 9 O -0.373 6.373 10 C -0.207 4.207 11 C -0.145 4.145 12 N -0.074 5.074 13 O 0.117 5.883 14 N -0.041 5.041 15 C -0.034 4.034 16 N -0.360 5.360 17 C 0.341 3.659 18 O -0.383 6.383 19 C -0.299 4.299 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.247 0.753 35 H 0.246 0.754 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.268 -6.587 26.368 27.374 hybrid contribution 1.472 -1.691 -0.810 2.383 sum 4.740 -8.278 25.558 27.280 Atomic orbital electron populations 1.22152 0.94325 1.02404 1.03270 1.21455 0.95128 0.96556 0.83411 0.90120 1.23045 0.96356 0.99863 0.97810 1.22258 0.99478 0.85333 0.90212 0.86902 1.45681 1.13673 1.28734 1.47163 1.16463 0.83119 0.80780 0.80650 1.90915 1.44856 1.62669 1.38825 1.26198 0.91934 1.01108 1.01488 1.27812 1.01056 0.89074 0.96567 1.75118 0.97328 1.21677 1.13306 1.85102 1.17422 1.35201 1.50554 1.75373 1.21541 0.98528 1.08659 1.22600 0.96242 0.89545 0.94977 1.48496 1.53916 1.28498 1.05047 1.20007 0.79680 0.84975 0.81226 1.90702 1.38444 1.26744 1.82413 1.23535 1.03772 1.02614 0.99988 1.85365 1.69669 1.37693 0.90538 1.22854 1.38324 1.14033 0.93081 0.90945 1.24989 0.95249 0.95972 0.97349 1.70017 1.38597 1.27985 1.13692 0.86170 0.79490 0.80242 0.79621 1.20270 1.20727 1.19656 0.92537 0.91841 0.90501 0.89546 0.88990 0.75332 0.75420 0.89421 0.91039 0.89213 0.89381 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.10 37.16 0.34 -1.42 16 2 C 0.14 1.47 3.46 -66.95 -0.23 1.23 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.13 -0.86 6.10 -24.89 -0.15 -1.01 16 5 C 0.13 1.05 3.32 -65.78 -0.22 0.83 16 6 H 0.11 1.01 7.73 -51.93 -0.40 0.61 16 7 N -0.70 -4.70 5.23 -52.53 -0.27 -4.97 16 8 C 0.61 5.21 7.85 -12.13 -0.10 5.11 16 9 O -0.50 -5.85 16.79 5.37 0.09 -5.76 16 10 C -0.04 -0.31 7.56 -80.07 -0.61 -0.91 16 11 C 0.04 0.25 12.63 -14.29 -0.18 0.07 16 12 N -0.35 -2.53 12.22 30.71 0.38 -2.15 16 13 O 0.34 2.43 11.65 27.27 0.32 2.75 16 14 N -0.32 -2.27 12.13 33.49 0.41 -1.87 16 15 C 0.09 0.98 6.38 -2.53 -0.02 0.97 16 16 N -0.62 -8.50 3.06 -163.01 -0.50 -9.00 16 17 C 0.55 10.41 7.66 -10.99 -0.08 10.33 16 18 O -0.51 -11.38 14.90 5.55 0.08 -11.30 16 19 C -0.15 -3.06 5.16 36.01 0.19 -2.88 16 20 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 21 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 22 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 25 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 1.10 6.88 -51.93 -0.36 0.74 16 32 H 0.09 0.44 7.70 -51.93 -0.40 0.04 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.41 1.94 8.37 -40.82 -0.34 1.60 16 35 H 0.23 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.09 1.05 7.47 -51.93 -0.39 0.66 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.75 7.85 -51.91 -0.41 1.34 16 39 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 363.91 15.07 5.48 5.48 Total: -1.00 -35.51 363.91 -6.18 -41.69 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -4.80 Total: -1.40 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -0.86 Total: -0.67 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.74 Total: -43.47 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.49 Total: -14.31 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.51 -6.18 -41.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338035381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.314 kcal (2) G-P(sol) polarization free energy of solvation -35.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds