Wall clock time and date at job start Sat Apr 11 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.87260 * 2 1 4 4 C 1.54365 * 109.84775 * 238.82175 * 2 1 3 5 5 C 1.55160 * 102.92248 * 262.73190 * 4 2 1 6 6 H 1.09010 * 111.00125 * 82.63578 * 5 4 2 7 7 N 1.46500 * 111.00803 * 206.45108 * 5 4 2 8 8 C 1.34773 * 120.00164 * 201.82067 * 7 5 4 9 9 O 1.21500 * 119.99894 * 359.97438 * 8 7 5 10 10 C 1.48275 * 119.99593 * 180.02562 * 8 7 5 11 11 C 1.47494 * 128.71094 * 180.02562 * 10 8 7 12 12 N 1.30637 * 102.71814 * 180.02562 * 11 10 8 13 13 O 1.20835 * 109.62021 * 359.97438 * 12 11 10 14 14 N 1.20903 * 115.90770 * 359.97438 * 13 12 11 15 15 C 1.54912 * 101.61439 * 324.54770 * 5 4 2 16 16 N 1.47026 * 109.87980 * 121.01537 * 2 1 3 17 17 C 1.34782 * 125.64988 * 300.43888 * 16 2 1 18 18 O 1.21278 * 119.99599 * 0.02562 * 17 16 2 19 19 C 1.50689 * 120.00175 * 180.02562 * 17 16 2 20 20 S 1.80997 * 109.47348 * 180.02562 * 19 17 16 21 21 C 1.76205 * 100.00128 * 179.97438 * 20 19 17 22 22 H 1.07995 * 120.00111 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99674 * 179.97438 * 21 20 19 24 24 N 1.31632 * 120.00125 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99595 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47125 * 59.99999 * 25 23 21 27 27 H 1.48496 * 109.46853 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47199 * 299.99857 * 25 23 21 29 29 H 1.09005 * 109.47212 * 300.44148 * 1 2 3 30 30 H 1.09002 * 109.47054 * 60.43607 * 1 2 3 31 31 H 1.08998 * 109.47068 * 180.43943 * 1 2 3 32 32 H 1.09001 * 110.70725 * 144.38890 * 4 2 1 33 33 H 1.09004 * 110.75814 * 21.10097 * 4 2 1 34 34 H 0.96998 * 119.99582 * 21.82176 * 7 5 4 35 35 H 1.08009 * 128.63541 * 0.03340 * 11 10 8 36 36 H 1.08999 * 110.36485 * 155.82797 * 15 5 4 37 37 H 1.08993 * 110.36494 * 278.14394 * 15 5 4 38 38 H 1.09004 * 109.47166 * 300.00079 * 19 17 16 39 39 H 1.09007 * 109.47452 * 59.99844 * 19 17 16 40 40 H 0.96999 * 119.99575 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0541 -0.7517 -1.2422 5 6 2.3519 -2.1705 -0.6893 6 1 1.4454 -2.7752 -0.6564 7 7 3.3936 -2.8334 -1.4775 8 6 3.4961 -4.1772 -1.4644 9 8 2.7248 -4.8388 -0.7985 10 6 4.5510 -4.8480 -2.2619 11 6 4.8352 -6.2898 -2.3881 12 7 5.8560 -6.3113 -3.2032 13 8 6.1485 -5.1817 -3.5171 14 7 5.4678 -4.3065 -3.0351 15 6 2.8568 -1.8487 0.7395 16 7 2.0299 -0.7124 1.1850 17 6 1.7753 -0.3810 2.4663 18 8 1.0784 0.5793 2.7172 19 6 2.3563 -1.2037 3.5872 20 16 1.8361 -0.5112 5.1764 21 6 2.6336 -1.6342 6.2754 22 1 3.2253 -2.4471 5.8811 23 6 2.5014 -1.4740 7.6477 24 7 1.7806 -0.4829 8.1283 25 14 3.3462 -2.6650 8.8127 26 1 4.8132 -2.6223 8.5863 27 1 3.0510 -2.2784 10.2157 28 1 2.8466 -4.0408 8.5623 29 1 -0.3634 0.5207 0.8860 30 1 -0.3633 0.5071 -0.8939 31 1 -0.3633 -1.0276 0.0079 32 1 2.9646 -0.2857 -1.6190 33 1 1.2908 -0.7930 -2.0193 34 1 4.0097 -2.3052 -2.0089 35 1 4.3261 -7.1208 -1.9226 36 1 2.7087 -2.7060 1.3961 37 1 3.9090 -1.5658 0.7152 38 1 2.0016 -2.2312 3.5054 39 1 3.4444 -1.1889 3.5226 40 1 1.6886 -0.3708 9.0874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338035383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:39 Heat of formation + Delta-G solvation = 28.656128 kcal Electronic energy + Delta-G solvation = -26354.082558 eV Core-core repulsion = 22299.909261 eV Total energy + Delta-G solvation = -4054.173297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -47.98663 -41.66001 -40.66373 -38.66915 -36.04220 -35.58558 -35.38220 -34.61021 -33.40985 -31.11252 -30.26700 -27.69317 -27.29418 -26.88846 -25.20186 -24.01940 -22.33119 -21.92603 -20.48726 -20.10047 -19.71570 -19.57694 -18.75988 -18.22903 -17.46845 -16.91011 -16.79867 -16.64655 -16.22620 -15.99434 -15.82587 -15.46856 -15.00076 -14.70753 -14.55317 -14.35788 -14.19510 -13.87408 -13.75906 -13.25066 -13.20093 -13.11700 -13.00681 -12.88801 -12.63162 -12.53747 -12.43209 -12.27264 -11.88994 -11.77899 -11.74554 -11.67499 -11.15265 -10.98950 -10.47263 -10.32641 -9.77748 -8.70405 -8.36912 -6.15697 -0.40623 0.29972 1.17341 1.32686 1.42137 1.44419 1.52866 1.54200 1.70519 2.02559 2.25031 2.31320 2.44767 2.83915 2.97003 3.18884 3.31746 3.41938 3.67259 3.72747 3.78546 3.92733 4.05352 4.11719 4.19478 4.35985 4.39896 4.43596 4.53467 4.66109 4.66842 4.82233 4.87890 5.04226 5.16851 5.28604 5.38706 5.47718 6.09840 6.16978 6.29317 6.74285 7.04006 7.08335 7.31926 8.72113 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011014 B = 0.002646 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.528069 B =10579.556826 C =12724.602280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 H 0.079 0.921 4 C -0.113 4.113 5 C 0.142 3.858 6 H 0.106 0.894 7 N -0.685 5.685 8 C 0.612 3.388 9 O -0.536 6.536 10 C -0.050 4.050 11 C 0.049 3.951 12 N -0.362 5.362 13 O 0.343 5.657 14 N -0.317 5.317 15 C 0.083 3.917 16 N -0.611 5.611 17 C 0.551 3.449 18 O -0.554 6.554 19 C -0.124 4.124 20 S -0.144 6.144 21 C -0.549 4.549 22 H 0.080 0.920 23 C 0.015 3.985 24 N -0.910 5.910 25 Si 0.998 3.002 26 H -0.262 1.262 27 H -0.277 1.277 28 H -0.263 1.263 29 H 0.035 0.965 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.424 0.576 35 H 0.252 0.748 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.840 -8.636 -29.002 31.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 H 0.097 0.903 4 C -0.151 4.151 5 C 0.037 3.963 6 H 0.124 0.876 7 N -0.337 5.337 8 C 0.395 3.605 9 O -0.410 6.410 10 C -0.215 4.215 11 C -0.137 4.137 12 N -0.086 5.086 13 O 0.117 5.883 14 N -0.037 5.037 15 C -0.042 4.042 16 N -0.347 5.347 17 C 0.339 3.661 18 O -0.432 6.432 19 C -0.275 4.275 20 S 0.083 5.917 21 C -0.697 4.697 22 H 0.098 0.902 23 C -0.190 4.190 24 N -0.546 5.546 25 Si 0.819 3.181 26 H -0.186 1.186 27 H -0.202 1.202 28 H -0.187 1.187 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.262 0.738 35 H 0.268 0.732 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.048 -7.252 -28.672 30.187 hybrid contribution 0.606 -1.512 1.341 2.110 sum 6.653 -8.763 -27.330 29.462 Atomic orbital electron populations 1.22159 0.94716 1.02361 1.02867 1.21769 0.95021 0.96896 0.83615 0.90336 1.23022 1.04698 0.91341 0.96049 1.22053 0.90828 0.94758 0.88677 0.87611 1.45524 1.34857 1.05174 1.48174 1.16553 0.81527 0.82618 0.79829 1.90905 1.42573 1.65249 1.42285 1.26064 0.99697 0.93398 1.02375 1.28242 0.93027 0.96933 0.95500 1.75125 1.15712 1.02892 1.14904 1.85104 1.44184 1.07568 1.51466 1.75357 1.03540 1.16771 1.07984 1.22864 0.95917 0.88820 0.96551 1.48365 1.51238 1.30891 1.04172 1.19629 0.79817 0.84072 0.82618 1.90682 1.39268 1.29792 1.83421 1.23338 1.04502 1.02833 0.96820 1.85500 1.68492 1.42190 0.95487 1.23145 1.36721 1.16040 0.93749 0.90195 1.26123 0.95760 0.97867 0.99252 1.70170 1.38895 1.31246 1.14298 0.85014 0.78746 0.77975 0.76340 1.18632 1.20171 1.18725 0.94540 0.88650 0.92395 0.86976 0.86176 0.73780 0.73193 0.90793 0.89289 0.88184 0.87896 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 9.06 71.98 0.65 -2.77 16 2 C 0.13 2.51 3.50 45.35 0.16 2.66 16 3 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.11 -1.03 6.13 31.80 0.19 -0.83 16 5 C 0.14 1.88 3.37 46.39 0.16 2.03 16 6 H 0.11 1.69 7.63 -2.38 -0.02 1.67 16 7 N -0.68 -7.12 5.21 -438.40 -2.29 -9.40 16 8 C 0.61 9.13 7.85 86.91 0.68 9.82 16 9 O -0.54 -11.70 16.74 -3.71 -0.06 -11.76 16 10 C -0.05 -0.63 7.56 44.29 0.34 -0.29 16 11 C 0.05 0.50 12.63 87.31 1.10 1.61 16 12 N -0.36 -4.53 12.22 -61.46 -0.75 -5.28 16 13 O 0.34 4.21 11.65 140.85 1.64 5.85 16 14 N -0.32 -3.78 12.13 -52.07 -0.63 -4.42 16 15 C 0.08 1.61 6.39 86.86 0.55 2.17 16 16 N -0.61 -16.14 3.08 -787.99 -2.43 -18.56 16 17 C 0.55 21.10 7.65 87.65 0.67 21.77 16 18 O -0.55 -25.81 14.76 -3.02 -0.04 -25.85 16 19 C -0.12 -5.17 5.16 71.23 0.37 -4.80 16 20 S -0.14 -8.14 20.57 -56.49 -1.16 -9.31 16 21 C -0.55 -31.90 9.50 67.95 0.65 -31.26 16 22 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 23 C 0.01 0.86 5.49 84.86 0.47 1.33 16 24 N -0.91 -56.31 13.22 21.65 0.29 -56.02 16 25 Si 1.00 44.05 29.55 68.60 2.03 46.08 16 26 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 28 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 29 H 0.04 1.08 6.74 -2.38 -0.02 1.07 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.11 0.50 8.00 -2.39 -0.02 0.49 16 33 H 0.12 0.60 7.83 -2.38 -0.02 0.58 16 34 H 0.42 2.40 8.39 -92.71 -0.78 1.62 16 35 H 0.25 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.07 1.68 7.48 -2.39 -0.02 1.66 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 3.93 7.85 -2.39 -0.02 3.91 16 39 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 40 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -81.09 363.54 2.90 -78.19 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.32 Total: 9.05 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 5.99 Total: 1.43 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -5.81 Total: -93.68 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: 1.53 Total: -31.77 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.16 Total: -9.31 kcal Total: -81.09 2.90 -78.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338035383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.849 kcal (2) G-P(sol) polarization free energy of solvation -81.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds