Wall clock time and date at job start Sat Apr 11 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99971 * 2 1 4 4 C 1.52992 * 109.47507 * 275.50076 * 3 2 1 5 5 H 1.09007 * 112.96279 * 67.14130 * 4 3 2 6 6 C 1.53947 * 113.77217 * 295.46848 * 4 3 2 7 7 C 1.53943 * 86.28869 * 222.08723 * 6 4 3 8 8 N 1.47578 * 113.77354 * 198.96791 * 4 3 2 9 9 C 1.34776 * 134.49493 * 318.94535 * 8 4 3 10 10 O 1.21284 * 119.99591 * 355.01405 * 9 8 4 11 11 C 1.50695 * 120.00132 * 175.01457 * 9 8 4 12 12 S 1.81005 * 109.46946 * 180.02562 * 11 9 8 13 13 C 1.76205 * 99.99882 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99771 * 359.97438 * 13 12 11 15 15 C 1.38799 * 119.99926 * 180.02562 * 13 12 11 16 16 N 1.31627 * 119.99914 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99896 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47424 * 59.99500 * 17 15 13 19 19 H 1.48493 * 109.47246 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47261 * 299.99989 * 17 15 13 21 21 C 1.34781 * 120.00261 * 179.97438 * 2 1 3 22 22 O 1.21494 * 120.00064 * 180.02562 * 21 2 1 23 23 C 1.48275 * 119.99433 * 0.02562 * 21 2 1 24 24 C 1.47493 * 128.71095 * 179.97438 * 23 21 2 25 25 N 1.30639 * 102.72043 * 179.97438 * 24 23 21 26 26 O 1.20837 * 109.62109 * 0.02562 * 25 24 23 27 27 N 1.20904 * 115.90480 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47071 * 264.64258 * 1 2 3 29 29 H 1.08994 * 109.46758 * 24.64081 * 1 2 3 30 30 H 1.08995 * 109.46632 * 144.64334 * 1 2 3 31 31 H 1.09003 * 109.47108 * 35.50478 * 3 2 1 32 32 H 1.08998 * 109.47165 * 155.49825 * 3 2 1 33 33 H 1.08999 * 113.73399 * 336.43551 * 6 4 3 34 34 H 1.09000 * 113.73973 * 107.63343 * 6 4 3 35 35 H 1.09003 * 113.76884 * 137.90320 * 7 6 4 36 36 H 1.08998 * 113.76891 * 269.19106 * 7 6 4 37 37 H 1.09003 * 109.47073 * 299.99830 * 11 9 8 38 38 H 1.08992 * 109.47205 * 59.99950 * 11 9 8 39 39 H 0.97005 * 119.99655 * 180.02562 * 16 15 13 40 40 H 1.08000 * 128.64091 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3328 1.7796 -1.4357 5 1 1.3786 2.0698 -1.8756 6 6 3.1818 0.8688 -2.3411 7 6 3.8057 2.1646 -2.8902 8 7 3.4013 2.7822 -1.6123 9 6 3.8339 3.8378 -0.8947 10 8 3.2383 4.1756 0.1064 11 6 5.0577 4.5983 -1.3361 12 16 5.3806 5.9485 -0.1746 13 6 6.8208 6.6475 -0.9107 14 1 7.2278 6.2184 -1.8144 15 6 7.4329 7.7488 -0.3285 16 7 6.9371 8.2714 0.7731 17 14 8.9601 8.4894 -1.1085 18 1 8.6423 8.9423 -2.4866 19 1 9.4165 9.6483 -0.3000 20 1 10.0356 7.4666 -1.1594 21 6 2.1390 -1.1672 0.0005 22 8 3.3539 -1.1672 0.0010 23 6 1.3976 -2.4513 0.0005 24 6 1.9330 -3.8256 0.0005 25 7 0.8500 -4.5562 0.0011 26 8 -0.1229 -3.8396 0.0009 27 7 0.0967 -2.6507 0.0007 28 1 -0.3633 -0.0960 1.0232 29 1 -0.3632 0.9340 -0.4284 30 1 -0.3632 -0.8381 -0.5947 31 1 1.6547 2.0017 0.5969 32 1 3.1890 1.1158 0.4262 33 1 3.8851 0.2401 -1.7951 34 1 2.5987 0.3145 -3.0765 35 1 4.8854 2.1081 -3.0285 36 1 3.2862 2.5684 -3.7592 37 1 5.9152 3.9257 -1.3582 38 1 4.8913 5.0076 -2.3325 39 1 7.3646 9.0414 1.1798 40 1 2.9638 -4.1477 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344181271.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:50 Heat of formation + Delta-G solvation = 104.621476 kcal Electronic energy + Delta-G solvation = -26495.345530 eV Core-core repulsion = 22444.466337 eV Total energy + Delta-G solvation = -4050.879192 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.40507 -40.85413 -39.70890 -37.43078 -36.19018 -35.12055 -34.95517 -32.43522 -30.91745 -29.50709 -28.10524 -27.45316 -26.16418 -25.46770 -24.52809 -23.55014 -21.92258 -20.54617 -19.53539 -18.94156 -18.64859 -17.88264 -17.64233 -16.89788 -16.66615 -16.31802 -15.52112 -15.21198 -15.14745 -14.80705 -14.28899 -14.27393 -13.92572 -13.69860 -13.48710 -13.34903 -13.08188 -12.88195 -12.59299 -12.39391 -12.08535 -11.94920 -11.88073 -11.81505 -11.59856 -11.26861 -11.06009 -11.04146 -10.95740 -10.81667 -10.76461 -9.83604 -9.38039 -9.27231 -9.06419 -8.59000 -8.25341 -6.51090 -6.22074 -3.92893 0.23219 0.83920 1.96556 2.42911 2.70108 2.91186 2.99843 3.04331 3.23272 3.23614 3.28439 3.37886 3.56537 4.06382 4.19706 4.21737 4.27520 4.63804 4.66571 4.70203 4.83907 4.86392 4.96539 5.07277 5.13073 5.19304 5.33653 5.37418 5.39785 5.50299 5.56188 5.66990 5.84697 5.87391 6.00981 6.13730 6.16982 6.68125 7.40209 7.58837 7.80023 7.90951 8.34591 8.51315 9.23058 10.85309 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.029808 B = 0.002044 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.134687 B =13697.680889 C =13833.311861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.590 5.590 3 C 0.114 3.886 4 C 0.121 3.879 5 H 0.091 0.909 6 C -0.151 4.151 7 C 0.105 3.895 8 N -0.643 5.643 9 C 0.556 3.444 10 O -0.515 6.515 11 C -0.145 4.145 12 S -0.060 6.060 13 C -0.535 4.535 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.868 5.868 17 Si 0.919 3.081 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.601 3.399 22 O -0.505 6.505 23 C -0.035 4.035 24 C 0.038 3.962 25 N -0.352 5.352 26 O 0.337 5.663 27 N -0.319 5.319 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.269 0.731 40 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.182 -24.101 -6.534 28.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.323 5.323 3 C -0.009 4.009 4 C 0.016 3.984 5 H 0.109 0.891 6 C -0.189 4.189 7 C -0.018 4.018 8 N -0.383 5.383 9 C 0.346 3.654 10 O -0.390 6.390 11 C -0.295 4.295 12 S 0.167 5.833 13 C -0.684 4.684 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.199 1.199 21 C 0.385 3.615 22 O -0.378 6.378 23 C -0.201 4.201 24 C -0.148 4.148 25 N -0.075 5.075 26 O 0.112 5.888 27 N -0.041 5.041 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -15.429 -23.619 -4.762 28.611 hybrid contribution 2.445 0.523 -1.727 3.039 sum -12.984 -23.096 -6.489 27.279 Atomic orbital electron populations 1.22217 0.77945 1.04297 1.03184 1.47590 1.07938 1.05287 1.71483 1.21758 0.99445 0.83036 0.96639 1.23046 0.93026 0.86588 0.95733 0.89076 1.23695 0.99654 0.96565 0.98965 1.23080 1.01556 0.89982 0.87216 1.50120 1.34989 1.29583 1.23568 1.20099 0.85163 0.77381 0.82771 1.90698 1.57577 1.64973 1.25708 1.23469 0.97073 1.03060 1.05938 1.85367 1.36291 1.29223 1.32464 1.22816 1.13545 1.17903 1.14091 0.90983 1.24993 0.97890 0.95821 0.94878 1.70008 1.39644 1.22495 1.18141 0.86218 0.81648 0.78515 0.79085 1.19942 1.20800 1.19911 1.16563 0.86129 0.80935 0.77870 1.90867 1.11880 1.85919 1.49140 1.26232 0.88970 0.97770 1.07087 1.27768 1.01325 0.86528 0.99138 1.75094 0.95396 1.20707 1.16287 1.85105 1.30903 1.09795 1.62964 1.75536 1.17024 0.98389 1.13173 0.91685 0.89957 0.89372 0.88476 0.88143 0.87745 0.90444 0.89696 0.89810 0.89244 0.89410 0.92122 0.75561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 9.70 59.85 0.58 1.01 16 2 N -0.59 -5.39 2.79 -182.54 -0.51 -5.90 16 3 C 0.11 1.30 4.97 -4.05 -0.02 1.28 16 4 C 0.12 1.32 4.52 -66.87 -0.30 1.02 16 5 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 6 C -0.15 -1.39 7.24 -25.81 -0.19 -1.58 16 7 C 0.10 1.06 8.61 -2.98 -0.03 1.03 16 8 N -0.64 -9.09 3.49 -171.19 -0.60 -9.69 16 9 C 0.56 10.64 7.94 -10.99 -0.09 10.56 16 10 O -0.52 -11.59 16.15 5.55 0.09 -11.50 16 11 C -0.14 -3.01 5.91 36.00 0.21 -2.79 16 12 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 13 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 14 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 15 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 16 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 17 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 21 C 0.60 5.96 7.26 -12.13 -0.09 5.87 16 22 O -0.51 -6.31 14.95 5.37 0.08 -6.23 16 23 C -0.04 -0.28 7.19 -80.07 -0.58 -0.86 16 24 C 0.04 0.25 12.63 -14.29 -0.18 0.07 16 25 N -0.35 -2.54 12.22 30.71 0.38 -2.16 16 26 O 0.34 2.38 11.65 27.27 0.32 2.70 16 27 N -0.32 -2.33 9.08 33.50 0.30 -2.03 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.44 8.03 -51.93 -0.42 0.02 16 30 H 0.09 0.53 5.47 -51.93 -0.28 0.25 16 31 H 0.10 1.18 8.11 -51.93 -0.42 0.76 16 32 H 0.10 1.41 7.26 -51.93 -0.38 1.03 16 33 H 0.10 1.14 6.53 -51.93 -0.34 0.80 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 38 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.23 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 362.54 15.07 5.46 5.46 Total: -1.00 -35.37 362.54 -6.22 -41.58 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -4.77 Total: -1.90 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -0.48 Total: 2.57 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.31 Total: -45.28 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.49 Total: -15.03 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.37 -6.22 -41.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344181271.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.204 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds