Wall clock time and date at job start Sat Apr 11 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46802 * 2 1 4 4 C 1.52996 * 109.46775 * 240.00268 * 2 1 3 5 5 N 1.46505 * 109.47228 * 184.99699 * 4 2 1 6 6 C 1.34774 * 120.00249 * 179.97438 * 5 4 2 7 7 O 1.21274 * 120.00146 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99898 * 180.02562 * 6 5 4 9 9 S 1.81001 * 109.46938 * 180.02562 * 8 6 5 10 10 C 1.76203 * 99.99927 * 179.97438 * 9 8 6 11 11 H 1.08007 * 119.99815 * 359.97438 * 10 9 8 12 12 C 1.38790 * 120.00138 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00105 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47057 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46797 * 120.00500 * 14 12 10 17 17 H 1.48502 * 109.47169 * 240.00219 * 14 12 10 18 18 N 1.46493 * 109.47099 * 120.00372 * 2 1 3 19 19 C 1.34784 * 119.99864 * 274.99655 * 18 2 1 20 20 O 1.21516 * 119.99686 * 359.72908 * 19 18 2 21 21 C 1.48151 * 120.00047 * 179.72817 * 19 18 2 22 22 C 1.39889 * 121.11832 * 359.72125 * 21 19 18 23 23 N 1.31772 * 119.78122 * 179.71161 * 22 21 19 24 24 N 1.28279 * 122.41615 * 0.58656 * 23 22 21 25 25 C 1.32275 * 122.43908 * 359.69504 * 24 23 22 26 26 O 1.35700 * 120.07992 * 180.02562 * 25 24 23 27 27 C 1.39232 * 119.83879 * 0.02562 * 25 24 23 28 28 H 1.09003 * 109.47308 * 59.99705 * 1 2 3 29 29 H 1.09005 * 109.47224 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47230 * 299.99882 * 1 2 3 31 31 H 1.08996 * 109.47503 * 304.99684 * 4 2 1 32 32 H 1.08996 * 109.47582 * 64.99722 * 4 2 1 33 33 H 0.97005 * 119.99677 * 0.02562 * 5 4 2 34 34 H 1.09008 * 109.46690 * 299.99733 * 8 6 5 35 35 H 1.08996 * 109.47403 * 59.99554 * 8 6 5 36 36 H 0.97004 * 120.00207 * 179.97438 * 13 12 10 37 37 H 0.97000 * 120.00740 * 94.72347 * 18 2 1 38 38 H 1.07993 * 120.11305 * 359.97438 * 22 21 19 39 39 H 0.96700 * 114.00124 * 269.98082 * 26 25 24 40 40 H 1.07995 * 121.11850 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1729 -1.4291 -2.1909 7 8 3.5698 -1.8840 -3.1396 8 6 5.6748 -1.5377 -2.1303 9 16 6.2781 -2.3907 -3.6083 10 6 8.0099 -2.3778 -3.2836 11 1 8.3862 -1.9246 -2.3783 12 6 8.8904 -2.9499 -4.1911 13 7 8.4318 -3.5018 -5.2947 14 14 10.7264 -2.9355 -3.8472 15 1 10.9817 -2.2596 -2.5499 16 1 11.2293 -4.3315 -3.7851 17 1 11.4277 -2.2047 -4.9332 18 7 2.0183 -0.6907 1.1961 19 6 2.1471 -0.0183 2.3571 20 8 1.8628 1.1619 2.4104 21 6 2.6352 -0.7182 3.5682 22 6 2.9636 -2.0776 3.5347 23 7 3.4007 -2.6724 4.6262 24 7 3.5311 -2.0528 5.7418 25 6 3.2422 -0.7693 5.8786 26 8 3.3985 -0.1613 7.0816 27 6 2.7772 -0.0435 4.7851 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.6053 -1.7197 -1.2952 32 1 1.7515 -0.1583 -2.1370 33 1 3.9824 -0.4627 -0.4317 34 1 6.1097 -0.5391 -2.0846 35 1 5.9629 -2.1004 -1.2424 36 1 9.0472 -3.9014 -5.9292 37 1 2.2452 -1.6328 1.1536 38 1 2.8632 -2.6367 2.6162 39 1 2.6128 -0.1947 7.6443 40 1 2.5347 1.0051 4.8735 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354258344.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:10 Heat of formation + Delta-G solvation = -50.539847 kcal Electronic energy + Delta-G solvation = -25767.352317 eV Core-core repulsion = 21709.744825 eV Total energy + Delta-G solvation = -4057.607492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.95469 -40.38948 -39.22382 -38.20269 -36.79942 -34.24142 -33.72480 -32.46132 -32.19143 -31.35396 -29.48630 -26.43277 -25.94783 -25.40522 -25.11233 -22.43572 -21.33348 -20.48201 -19.77181 -18.85589 -18.12214 -17.76107 -17.00642 -16.82413 -16.44281 -16.35370 -15.92732 -15.48585 -15.24049 -14.83247 -14.82563 -14.38358 -14.14019 -14.07274 -13.59988 -13.27386 -13.07517 -13.03064 -12.84952 -12.63856 -12.39707 -12.00763 -11.89712 -11.47658 -11.09126 -11.05630 -11.01916 -10.92866 -10.78449 -10.42186 -10.06635 -9.86257 -9.80877 -9.53025 -9.13128 -9.06890 -8.28842 -6.54668 -6.25248 -3.96289 -0.37278 0.09967 2.05660 2.24465 2.67492 2.92218 2.95180 2.97108 3.19911 3.25852 3.30275 3.53846 3.59594 3.67918 3.87804 4.13676 4.16967 4.19774 4.35709 4.63601 4.76967 4.85249 5.04430 5.10024 5.10328 5.16597 5.20293 5.26878 5.39679 5.50493 5.63767 5.74906 5.79924 5.84714 6.06865 6.40527 6.65847 6.73497 7.41947 7.51619 7.57045 7.96923 8.32089 8.46484 9.20577 10.82186 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010725 B = 0.002442 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.984307 B =11462.976437 C =13490.077568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 H 0.101 0.899 4 C 0.112 3.888 5 N -0.742 5.742 6 C 0.533 3.467 7 O -0.514 6.514 8 C -0.155 4.155 9 S -0.059 6.059 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.280 1.280 18 N -0.715 5.715 19 C 0.566 3.434 20 O -0.518 6.518 21 C -0.116 4.116 22 C 0.061 3.939 23 N -0.208 5.208 24 N -0.240 5.240 25 C 0.258 3.742 26 O -0.469 6.469 27 C -0.074 4.074 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.398 0.602 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.268 0.732 37 H 0.405 0.595 38 H 0.182 0.818 39 H 0.409 0.591 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.765 7.736 20.861 28.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 H 0.119 0.881 4 C -0.013 4.013 5 N -0.398 5.398 6 C 0.319 3.681 7 O -0.387 6.387 8 C -0.305 4.305 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.205 1.205 18 N -0.368 5.368 19 C 0.350 3.650 20 O -0.394 6.394 21 C -0.131 4.131 22 C -0.104 4.104 23 N -0.051 5.051 24 N -0.093 5.093 25 C 0.072 3.928 26 O -0.275 6.275 27 C -0.105 4.105 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.241 0.759 38 H 0.198 0.802 39 H 0.268 0.732 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.860 6.547 19.686 27.375 hybrid contribution 1.315 1.507 1.206 2.336 sum -16.544 8.054 20.893 27.841 Atomic orbital electron populations 1.22122 0.93521 1.03010 1.03402 1.21382 0.95277 0.97988 0.82610 0.88096 1.21634 0.81283 1.01497 0.96863 1.46022 1.06693 1.62284 1.24791 1.20335 0.89560 0.76649 0.81536 1.90716 1.69832 1.45844 1.32344 1.23540 0.93376 1.05784 1.07819 1.85393 1.04761 1.73023 1.20083 1.22896 0.91438 1.44291 1.09727 0.90878 1.24994 0.99643 0.94499 0.94445 1.70024 1.35357 1.35489 1.09386 0.86114 0.82914 0.78036 0.78423 1.19606 1.20524 1.20544 1.46033 1.66870 1.14454 1.09411 1.17848 0.78055 0.86455 0.82628 1.90833 1.49124 1.14834 1.84570 1.21226 1.01312 0.95145 0.95370 1.24653 0.93732 0.92076 0.99976 1.73144 1.08732 1.28759 0.94500 1.72857 1.11045 1.07625 1.17732 1.20811 0.94734 0.89440 0.87811 1.84838 1.42310 1.74883 1.25438 1.22803 0.93261 1.03192 0.91236 0.90612 0.91736 0.91528 0.90631 0.89562 0.76784 0.89206 0.89204 0.92199 0.75862 0.80158 0.73188 0.81277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 9.48 37.16 0.35 -0.56 16 2 C 0.13 0.87 2.74 -67.94 -0.19 0.68 16 3 H 0.10 0.78 7.57 -51.93 -0.39 0.39 16 4 C 0.11 0.97 5.23 -4.04 -0.02 0.95 16 5 N -0.74 -8.24 5.39 -60.30 -0.32 -8.57 16 6 C 0.53 9.01 7.85 -10.99 -0.09 8.92 16 7 O -0.51 -10.77 15.86 5.56 0.09 -10.68 16 8 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.54 -15.01 9.50 30.94 0.29 -14.71 16 11 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 12 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 14 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 N -0.71 -4.20 4.48 -54.66 -0.24 -4.44 16 19 C 0.57 4.32 7.77 -12.19 -0.09 4.22 16 20 O -0.52 -5.52 16.15 5.35 0.09 -5.44 16 21 C -0.12 -0.81 5.92 -104.60 -0.62 -1.43 16 22 C 0.06 0.42 10.84 -16.96 -0.18 0.24 16 23 N -0.21 -2.03 11.48 30.79 0.35 -1.68 16 24 N -0.24 -2.45 11.50 30.49 0.35 -2.09 16 25 C 0.26 2.02 7.85 -16.99 -0.13 1.89 16 26 O -0.47 -2.83 13.57 -18.80 -0.26 -3.08 16 27 C -0.07 -0.51 9.72 -38.61 -0.38 -0.89 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.40 3.62 8.14 -40.82 -0.33 3.29 16 34 H 0.09 1.61 8.14 -51.91 -0.42 1.18 16 35 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.41 1.71 6.76 -40.82 -0.28 1.44 16 38 H 0.18 0.68 6.53 -52.49 -0.34 0.33 16 39 H 0.41 0.22 9.06 45.56 0.41 0.63 16 40 H 0.17 0.97 7.79 -52.49 -0.41 0.56 16 LS Contribution 370.60 15.07 5.58 5.58 Total: -1.00 -38.42 370.60 -5.63 -44.05 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -3.84 Total: 0.43 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -0.93 Total: -1.44 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.87 Total: -41.89 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.08 Total: -19.19 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.42 -5.63 -44.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354258344.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.491 kcal (2) G-P(sol) polarization free energy of solvation -38.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds