Wall clock time and date at job start Sat Apr 11 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46802 * 2 1 4 4 C 1.52996 * 109.46775 * 240.00268 * 2 1 3 5 5 N 1.46505 * 109.47228 * 184.99699 * 4 2 1 6 6 C 1.34774 * 120.00249 * 179.97438 * 5 4 2 7 7 O 1.21274 * 120.00146 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99898 * 180.02562 * 6 5 4 9 9 S 1.81001 * 109.46938 * 180.02562 * 8 6 5 10 10 C 1.76203 * 99.99927 * 179.97438 * 9 8 6 11 11 H 1.08007 * 119.99815 * 359.97438 * 10 9 8 12 12 C 1.38790 * 120.00138 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00105 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47057 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46797 * 120.00500 * 14 12 10 17 17 H 1.48502 * 109.47169 * 240.00219 * 14 12 10 18 18 N 1.46493 * 109.47099 * 120.00372 * 2 1 3 19 19 C 1.34784 * 119.99864 * 274.99655 * 18 2 1 20 20 O 1.21516 * 119.99686 * 359.72908 * 19 18 2 21 21 C 1.48151 * 120.00047 * 179.72817 * 19 18 2 22 22 C 1.39889 * 121.11832 * 359.72125 * 21 19 18 23 23 N 1.31772 * 119.78122 * 179.71161 * 22 21 19 24 24 N 1.28279 * 122.41615 * 0.58656 * 23 22 21 25 25 C 1.32275 * 122.43908 * 359.69504 * 24 23 22 26 26 O 1.35700 * 120.07992 * 180.02562 * 25 24 23 27 27 C 1.39232 * 119.83879 * 0.02562 * 25 24 23 28 28 H 1.09003 * 109.47308 * 59.99705 * 1 2 3 29 29 H 1.09005 * 109.47224 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47230 * 299.99882 * 1 2 3 31 31 H 1.08996 * 109.47503 * 304.99684 * 4 2 1 32 32 H 1.08996 * 109.47582 * 64.99722 * 4 2 1 33 33 H 0.97005 * 119.99677 * 0.02562 * 5 4 2 34 34 H 1.09008 * 109.46690 * 299.99733 * 8 6 5 35 35 H 1.08996 * 109.47403 * 59.99554 * 8 6 5 36 36 H 0.97004 * 120.00207 * 179.97438 * 13 12 10 37 37 H 0.97000 * 120.00740 * 94.72347 * 18 2 1 38 38 H 1.07993 * 120.11305 * 359.97438 * 22 21 19 39 39 H 0.96700 * 114.00124 * 269.98082 * 26 25 24 40 40 H 1.07995 * 121.11850 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1729 -1.4291 -2.1909 7 8 3.5698 -1.8840 -3.1396 8 6 5.6748 -1.5377 -2.1303 9 16 6.2781 -2.3907 -3.6083 10 6 8.0099 -2.3778 -3.2836 11 1 8.3862 -1.9246 -2.3783 12 6 8.8904 -2.9499 -4.1911 13 7 8.4318 -3.5018 -5.2947 14 14 10.7264 -2.9355 -3.8472 15 1 10.9817 -2.2596 -2.5499 16 1 11.2293 -4.3315 -3.7851 17 1 11.4277 -2.2047 -4.9332 18 7 2.0183 -0.6907 1.1961 19 6 2.1471 -0.0183 2.3571 20 8 1.8628 1.1619 2.4104 21 6 2.6352 -0.7182 3.5682 22 6 2.9636 -2.0776 3.5347 23 7 3.4007 -2.6724 4.6262 24 7 3.5311 -2.0528 5.7418 25 6 3.2422 -0.7693 5.8786 26 8 3.3985 -0.1613 7.0816 27 6 2.7772 -0.0435 4.7851 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.6053 -1.7197 -1.2952 32 1 1.7515 -0.1583 -2.1370 33 1 3.9824 -0.4627 -0.4317 34 1 6.1097 -0.5391 -2.0846 35 1 5.9629 -2.1004 -1.2424 36 1 9.0472 -3.9014 -5.9292 37 1 2.2452 -1.6328 1.1536 38 1 2.8632 -2.6367 2.6162 39 1 2.6128 -0.1947 7.6443 40 1 2.5347 1.0051 4.8735 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354258344.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:09 Heat of formation + Delta-G solvation = -85.043540 kcal Electronic energy + Delta-G solvation = -25768.848510 eV Core-core repulsion = 21709.744825 eV Total energy + Delta-G solvation = -4059.103685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.53579 -41.11390 -40.39614 -38.69261 -37.60440 -35.04504 -34.58971 -34.52532 -32.79887 -32.05640 -30.77576 -27.73864 -27.03030 -26.58850 -25.66773 -23.06019 -21.93754 -21.73832 -20.34408 -19.82096 -19.43848 -18.51693 -17.80278 -17.60018 -17.49173 -17.11194 -16.88145 -16.77672 -16.44517 -16.11878 -15.80493 -15.52801 -14.98893 -14.82373 -14.60696 -14.53651 -14.20802 -13.84626 -13.71299 -13.32440 -13.24641 -13.15665 -12.97526 -12.91484 -12.59638 -12.56823 -12.07813 -11.70901 -11.67438 -11.52008 -11.15831 -10.99206 -10.98475 -10.65208 -10.38131 -10.26714 -10.15884 -8.65242 -8.35031 -6.12022 -0.94852 -0.41546 1.27326 1.40868 1.45799 1.47594 1.57698 1.60628 1.68752 2.17270 2.25030 2.29464 2.38198 2.99433 3.02305 3.11922 3.31966 3.36341 3.53001 3.63680 3.91667 3.96331 4.05889 4.22986 4.30163 4.32932 4.52607 4.59108 4.59452 4.67977 4.78762 4.80512 4.95441 5.23980 5.29292 5.40338 5.42547 6.20022 6.20237 6.41613 6.43399 6.86062 7.07127 7.21566 7.38931 8.74183 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010725 B = 0.002442 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.984307 B =11462.976437 C =13490.077568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.143 3.857 3 H 0.095 0.905 4 C 0.113 3.887 5 N -0.715 5.715 6 C 0.538 3.462 7 O -0.559 6.559 8 C -0.133 4.133 9 S -0.147 6.147 10 C -0.545 4.545 11 H 0.081 0.919 12 C 0.014 3.986 13 N -0.910 5.910 14 Si 0.996 3.004 15 H -0.258 1.258 16 H -0.274 1.274 17 H -0.274 1.274 18 N -0.704 5.704 19 C 0.573 3.427 20 O -0.549 6.549 21 C -0.115 4.115 22 C 0.069 3.931 23 N -0.239 5.239 24 N -0.274 5.274 25 C 0.262 3.738 26 O -0.477 6.477 27 C -0.070 4.070 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.412 0.588 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.271 0.729 37 H 0.415 0.585 38 H 0.210 0.790 39 H 0.431 0.569 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.800 8.613 22.453 29.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 H 0.113 0.887 4 C -0.011 4.011 5 N -0.369 5.369 6 C 0.324 3.676 7 O -0.437 6.437 8 C -0.285 4.285 9 S 0.080 5.920 10 C -0.693 4.693 11 H 0.099 0.901 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.818 3.182 15 H -0.182 1.182 16 H -0.199 1.199 17 H -0.200 1.200 18 N -0.357 5.357 19 C 0.358 3.642 20 O -0.426 6.426 21 C -0.129 4.129 22 C -0.097 4.097 23 N -0.081 5.081 24 N -0.126 5.126 25 C 0.075 3.925 26 O -0.286 6.286 27 C -0.101 4.101 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.249 0.751 34 H 0.123 0.877 35 H 0.129 0.871 36 H 0.080 0.920 37 H 0.254 0.746 38 H 0.226 0.774 39 H 0.294 0.706 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -17.922 7.423 21.347 28.844 hybrid contribution 1.192 1.325 0.810 1.958 sum -16.730 8.748 22.157 29.109 Atomic orbital electron populations 1.22089 0.92344 1.03732 1.03470 1.21241 0.95978 0.97238 0.81678 0.88711 1.21791 0.79186 1.02215 0.97886 1.45725 1.07839 1.59986 1.23375 1.19929 0.88635 0.76983 0.82074 1.90710 1.70260 1.48301 1.34433 1.23397 0.95129 1.05634 1.04295 1.85527 1.05610 1.75008 1.25830 1.23222 0.91882 1.44177 1.10016 0.90109 1.26081 1.05018 0.93892 0.94085 1.70178 1.37255 1.36615 1.10603 0.84944 0.76209 0.78287 0.78755 1.18214 1.19939 1.19993 1.45946 1.66133 1.14879 1.08760 1.17827 0.77498 0.85954 0.82905 1.90830 1.50640 1.16148 1.85003 1.21189 1.01369 0.95213 0.95151 1.25020 0.92413 0.92119 1.00160 1.73058 1.10177 1.29710 0.95153 1.72750 1.12492 1.08871 1.18483 1.20841 0.94148 0.88908 0.88599 1.84792 1.44053 1.74487 1.25278 1.22948 0.92548 1.03626 0.90975 0.89858 0.90714 0.92168 0.89937 0.89829 0.75145 0.87657 0.87129 0.92001 0.74630 0.77371 0.70608 0.80185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 71.98 0.68 -0.70 16 2 C 0.14 1.52 2.74 44.99 0.12 1.64 16 3 H 0.09 1.23 7.57 -2.39 -0.02 1.21 16 4 C 0.11 1.69 5.23 86.38 0.45 2.14 16 5 N -0.71 -14.07 5.39 -463.07 -2.50 -16.57 16 6 C 0.54 17.44 7.85 87.66 0.69 18.13 16 7 O -0.56 -23.34 15.86 -3.01 -0.05 -23.39 16 8 C -0.13 -4.91 6.16 71.24 0.44 -4.47 16 9 S -0.15 -7.87 20.57 -56.49 -1.16 -9.03 16 10 C -0.55 -30.55 9.50 67.95 0.65 -29.90 16 11 H 0.08 4.23 7.80 -2.91 -0.02 4.21 16 12 C 0.01 0.79 5.49 84.85 0.47 1.26 16 13 N -0.91 -55.14 13.22 21.65 0.29 -54.85 16 14 Si 1.00 43.28 29.55 68.60 2.03 45.31 16 15 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 18 N -0.70 -6.30 4.48 -445.13 -1.99 -8.30 16 19 C 0.57 7.43 7.77 86.88 0.67 8.11 16 20 O -0.55 -10.66 16.15 -3.77 -0.06 -10.72 16 21 C -0.12 -1.38 5.92 -19.85 -0.12 -1.50 16 22 C 0.07 0.82 10.84 85.10 0.92 1.74 16 23 N -0.24 -4.45 11.48 -56.51 -0.65 -5.10 16 24 N -0.27 -5.43 11.50 -170.31 -1.96 -7.39 16 25 C 0.26 3.84 7.85 84.87 0.67 4.51 16 26 O -0.48 -5.17 13.57 -90.20 -1.22 -6.39 16 27 C -0.07 -0.86 9.72 22.90 0.22 -0.64 16 28 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.41 6.13 8.14 -92.70 -0.75 5.38 16 34 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 35 H 0.11 3.62 8.14 -2.40 -0.02 3.60 16 36 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 37 H 0.42 2.13 6.76 -92.71 -0.63 1.51 16 38 H 0.21 0.97 6.53 -2.91 -0.02 0.95 16 39 H 0.43 -0.13 9.06 -74.06 -0.67 -0.80 16 40 H 0.18 1.77 7.79 -2.91 -0.02 1.74 16 Total: -1.00 -85.25 370.60 -2.33 -87.59 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -0.92 Total: 8.53 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 5.86 Total: 0.30 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -6.81 Total: -92.20 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -1.33 Total: -40.50 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -7.87 SS G_CDS: -1.16 Total: -9.03 kcal Total: -85.25 -2.33 -87.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354258344.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.543 kcal (2) G-P(sol) polarization free energy of solvation -85.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds