Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47191 * 2 1 4 4 C 1.52994 * 109.47019 * 120.00181 * 2 1 3 5 5 N 1.46504 * 109.47182 * 174.99922 * 4 2 1 6 6 C 1.34775 * 120.00066 * 180.02562 * 5 4 2 7 7 O 1.21275 * 120.00042 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99538 * 179.97438 * 6 5 4 9 9 S 1.81004 * 109.46991 * 179.97438 * 8 6 5 10 10 C 1.76195 * 100.00090 * 179.97438 * 9 8 6 11 11 H 1.08002 * 120.00457 * 0.02562 * 10 9 8 12 12 C 1.38800 * 119.99811 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00190 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99767 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47061 * 90.00175 * 14 12 10 16 16 H 1.48498 * 109.46898 * 210.00265 * 14 12 10 17 17 H 1.48495 * 109.47274 * 329.99879 * 14 12 10 18 18 N 1.46505 * 109.46616 * 240.00027 * 2 1 3 19 19 C 1.34777 * 119.99722 * 85.00435 * 18 2 1 20 20 O 1.21513 * 120.00316 * 359.97438 * 19 18 2 21 21 C 1.48154 * 119.99528 * 179.71956 * 19 18 2 22 22 C 1.39893 * 121.12514 * 359.97438 * 21 19 18 23 23 N 1.31768 * 119.78614 * 179.75739 * 22 21 19 24 24 N 1.28268 * 122.41736 * 0.53878 * 23 22 21 25 25 C 1.32275 * 122.44201 * 359.72419 * 24 23 22 26 26 O 1.35696 * 120.08588 * 180.02562 * 25 24 23 27 27 C 1.39244 * 119.83342 * 359.97438 * 25 24 23 28 28 H 1.09002 * 109.46899 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46895 * 299.99497 * 1 2 3 30 30 H 1.08998 * 109.47131 * 59.99913 * 1 2 3 31 31 H 1.08995 * 109.47315 * 294.99718 * 4 2 1 32 32 H 1.09006 * 109.47275 * 55.00328 * 4 2 1 33 33 H 0.97009 * 119.99711 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.47726 * 299.99386 * 8 6 5 35 35 H 1.08998 * 109.47231 * 60.00064 * 8 6 5 36 36 H 0.96997 * 120.00000 * 180.02562 * 13 12 10 37 37 H 0.97000 * 119.99795 * 264.99551 * 18 2 1 38 38 H 1.07998 * 120.10535 * 0.02562 * 22 21 19 39 39 H 0.96700 * 114.00340 * 269.98006 * 26 25 24 40 40 H 1.08002 * 121.11429 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1730 -1.4293 2.1906 7 8 3.5699 -1.8843 3.1393 8 6 5.6749 -1.5379 2.1299 9 16 6.2783 -2.3911 3.6078 10 6 8.0099 -2.3795 3.2822 11 1 8.3862 -1.9268 2.3767 12 6 8.8904 -2.9521 4.1896 13 7 8.4319 -3.5043 5.2930 14 14 10.7264 -2.9392 3.8447 15 1 11.3287 -1.7079 4.4160 16 1 11.3551 -4.1322 4.4664 17 1 10.9547 -2.9673 2.3777 18 7 2.0183 -0.6906 -1.1963 19 6 2.1470 -0.0182 -2.3572 20 8 1.8577 1.1607 -2.4118 21 6 2.6466 -0.7151 -3.5653 22 6 2.9920 -2.0702 -3.5275 23 7 3.4291 -2.6650 -4.6191 24 7 3.5643 -2.0442 -5.7333 25 6 3.2701 -0.7620 -5.8714 26 8 3.4309 -0.1528 -7.0732 27 6 2.7939 -0.0391 -4.7807 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7199 1.2950 33 1 3.9824 -0.4628 0.4315 34 1 5.9629 -2.1008 1.2420 35 1 6.1098 -0.5395 2.0841 36 1 9.0473 -3.9041 5.9272 37 1 2.2490 -1.6318 -1.1527 38 1 2.8966 -2.6281 -2.6078 39 1 4.3061 0.2378 -7.2023 40 1 2.5477 1.0086 -4.8701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354258354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = -50.726190 kcal Electronic energy + Delta-G solvation = -25774.870067 eV Core-core repulsion = 21717.254494 eV Total energy + Delta-G solvation = -4057.615573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.95280 -40.38946 -39.23095 -38.19508 -36.80054 -34.24190 -33.72872 -32.47281 -32.18860 -31.35365 -29.49562 -26.42990 -25.95097 -25.41385 -25.10991 -22.43510 -21.33111 -20.49208 -19.76595 -18.85333 -18.13401 -17.76371 -17.00659 -16.78591 -16.45345 -16.38215 -15.87365 -15.61598 -15.22579 -14.84325 -14.63913 -14.52907 -14.13813 -14.07482 -13.60572 -13.27045 -13.07642 -13.03290 -12.84460 -12.64361 -12.39485 -12.00750 -11.90568 -11.47539 -11.10142 -11.06816 -11.01796 -10.92687 -10.80203 -10.41858 -10.06292 -9.87996 -9.81371 -9.53890 -9.13677 -9.07513 -8.30322 -6.55827 -6.26162 -3.97356 -0.37027 0.10157 2.05956 2.24221 2.68038 2.90435 2.95537 2.97388 3.19537 3.24480 3.28135 3.53987 3.58671 3.67927 3.87968 4.13806 4.15983 4.19649 4.36071 4.63605 4.77302 4.85447 5.03514 5.09283 5.10211 5.17080 5.20565 5.27144 5.39698 5.50385 5.63448 5.75541 5.78743 5.84637 6.05215 6.39614 6.66374 6.73641 7.42024 7.50679 7.55476 7.97251 8.30630 8.45608 9.19405 10.81226 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010641 B = 0.002454 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.634345 B =11406.291845 C =13452.830197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 H 0.101 0.899 4 C 0.112 3.888 5 N -0.742 5.742 6 C 0.533 3.467 7 O -0.513 6.513 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.715 5.715 19 C 0.566 3.434 20 O -0.518 6.518 21 C -0.116 4.116 22 C 0.061 3.939 23 N -0.208 5.208 24 N -0.240 5.240 25 C 0.258 3.742 26 O -0.470 6.470 27 C -0.074 4.074 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.398 0.602 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.405 0.595 38 H 0.181 0.819 39 H 0.410 0.590 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.426 8.588 -19.972 26.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.028 3.972 3 H 0.119 0.881 4 C -0.013 4.013 5 N -0.398 5.398 6 C 0.319 3.681 7 O -0.387 6.387 8 C -0.305 4.305 9 S 0.168 5.832 10 C -0.685 4.685 11 H 0.091 0.909 12 C -0.135 4.135 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.368 5.368 19 C 0.350 3.650 20 O -0.394 6.394 21 C -0.131 4.131 22 C -0.104 4.104 23 N -0.051 5.051 24 N -0.093 5.093 25 C 0.072 3.928 26 O -0.276 6.276 27 C -0.105 4.105 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.241 0.759 38 H 0.198 0.802 39 H 0.270 0.730 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.644 7.106 -19.088 25.682 hybrid contribution 2.172 1.734 -0.986 2.949 sum -13.472 8.840 -20.075 25.742 Atomic orbital electron populations 1.22123 0.93513 1.03035 1.03415 1.21383 0.95307 0.97949 0.82593 0.88113 1.21638 0.81260 1.01517 0.96870 1.46020 1.06699 1.62283 1.24781 1.20334 0.89557 0.76664 0.81547 1.90718 1.69828 1.45821 1.32339 1.23537 0.93383 1.05761 1.07830 1.85401 1.04723 1.73030 1.20052 1.22852 0.91472 1.44421 1.09721 0.90938 1.24993 0.99624 0.94472 0.94455 1.70009 1.35460 1.35375 1.09389 0.86167 0.82863 0.77884 0.78587 1.20260 1.20710 1.19680 1.46036 1.66806 1.14540 1.09392 1.17845 0.78118 0.86426 0.82596 1.90832 1.49147 1.14926 1.84459 1.21227 1.01225 0.95118 0.95492 1.24653 0.93697 0.92026 1.00063 1.73140 1.09030 1.28641 0.94325 1.72855 1.11510 1.07829 1.17074 1.20813 0.95881 0.90042 0.86050 1.84814 1.39130 1.72997 1.30665 1.22805 0.94328 1.03033 0.90323 0.91728 0.90622 0.91494 0.89553 0.90618 0.76810 0.89214 0.89222 0.92131 0.75860 0.80163 0.73038 0.81281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.48 37.16 0.35 -0.59 16 2 C 0.13 0.87 2.73 -67.93 -0.19 0.68 16 3 H 0.10 0.77 7.58 -51.93 -0.39 0.38 16 4 C 0.11 0.96 5.23 -4.04 -0.02 0.94 16 5 N -0.74 -8.10 5.39 -60.30 -0.32 -8.42 16 6 C 0.53 8.91 7.85 -10.99 -0.09 8.82 16 7 O -0.51 -10.70 15.86 5.56 0.09 -10.61 16 8 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 10 C -0.54 -14.92 9.50 30.94 0.29 -14.63 16 11 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 12 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -25.71 13.22 55.49 0.73 -24.97 16 14 Si 0.92 21.06 29.55 -169.99 -5.02 16.03 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 N -0.71 -4.20 4.48 -54.65 -0.24 -4.45 16 19 C 0.57 4.32 7.77 -12.19 -0.09 4.23 16 20 O -0.52 -5.52 16.15 5.35 0.09 -5.44 16 21 C -0.12 -0.81 5.92 -104.60 -0.62 -1.43 16 22 C 0.06 0.42 10.84 -16.96 -0.18 0.24 16 23 N -0.21 -2.04 11.48 30.79 0.35 -1.69 16 24 N -0.24 -2.45 11.50 30.49 0.35 -2.10 16 25 C 0.26 2.03 7.85 -16.99 -0.13 1.89 16 26 O -0.47 -2.83 13.57 -18.79 -0.26 -3.09 16 27 C -0.07 -0.51 9.72 -38.60 -0.38 -0.89 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.40 3.50 8.14 -40.82 -0.33 3.16 16 34 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 35 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.41 1.72 6.75 -40.82 -0.28 1.44 16 38 H 0.18 0.68 6.53 -52.49 -0.34 0.34 16 39 H 0.41 0.35 9.06 45.56 0.41 0.77 16 40 H 0.17 0.97 7.79 -52.49 -0.41 0.56 16 LS Contribution 370.60 15.07 5.58 5.58 Total: -1.00 -38.11 370.60 -5.63 -43.75 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -3.84 Total: 0.59 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -0.93 Total: -1.44 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.87 Total: -41.63 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.08 Total: -19.14 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.11 -5.63 -43.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354258354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.980 kcal (2) G-P(sol) polarization free energy of solvation -38.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds