Wall clock time and date at job start Sat Apr 11 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47191 * 2 1 4 4 C 1.52994 * 109.47019 * 120.00181 * 2 1 3 5 5 N 1.46504 * 109.47182 * 174.99922 * 4 2 1 6 6 C 1.34775 * 120.00066 * 180.02562 * 5 4 2 7 7 O 1.21275 * 120.00042 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99538 * 179.97438 * 6 5 4 9 9 S 1.81004 * 109.46991 * 179.97438 * 8 6 5 10 10 C 1.76195 * 100.00090 * 179.97438 * 9 8 6 11 11 H 1.08002 * 120.00457 * 0.02562 * 10 9 8 12 12 C 1.38800 * 119.99811 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00190 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99767 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47061 * 90.00175 * 14 12 10 16 16 H 1.48498 * 109.46898 * 210.00265 * 14 12 10 17 17 H 1.48495 * 109.47274 * 329.99879 * 14 12 10 18 18 N 1.46505 * 109.46616 * 240.00027 * 2 1 3 19 19 C 1.34777 * 119.99722 * 85.00435 * 18 2 1 20 20 O 1.21513 * 120.00316 * 359.97438 * 19 18 2 21 21 C 1.48154 * 119.99528 * 179.71956 * 19 18 2 22 22 C 1.39893 * 121.12514 * 359.97438 * 21 19 18 23 23 N 1.31768 * 119.78614 * 179.75739 * 22 21 19 24 24 N 1.28268 * 122.41736 * 0.53878 * 23 22 21 25 25 C 1.32275 * 122.44201 * 359.72419 * 24 23 22 26 26 O 1.35696 * 120.08588 * 180.02562 * 25 24 23 27 27 C 1.39244 * 119.83342 * 359.97438 * 25 24 23 28 28 H 1.09002 * 109.46899 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46895 * 299.99497 * 1 2 3 30 30 H 1.08998 * 109.47131 * 59.99913 * 1 2 3 31 31 H 1.08995 * 109.47315 * 294.99718 * 4 2 1 32 32 H 1.09006 * 109.47275 * 55.00328 * 4 2 1 33 33 H 0.97009 * 119.99711 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.47726 * 299.99386 * 8 6 5 35 35 H 1.08998 * 109.47231 * 60.00064 * 8 6 5 36 36 H 0.96997 * 120.00000 * 180.02562 * 13 12 10 37 37 H 0.97000 * 119.99795 * 264.99551 * 18 2 1 38 38 H 1.07998 * 120.10535 * 0.02562 * 22 21 19 39 39 H 0.96700 * 114.00340 * 269.98006 * 26 25 24 40 40 H 1.08002 * 121.11429 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1730 -1.4293 2.1906 7 8 3.5699 -1.8843 3.1393 8 6 5.6749 -1.5379 2.1299 9 16 6.2783 -2.3911 3.6078 10 6 8.0099 -2.3795 3.2822 11 1 8.3862 -1.9268 2.3767 12 6 8.8904 -2.9521 4.1896 13 7 8.4319 -3.5043 5.2930 14 14 10.7264 -2.9392 3.8447 15 1 11.3287 -1.7079 4.4160 16 1 11.3551 -4.1322 4.4664 17 1 10.9547 -2.9673 2.3777 18 7 2.0183 -0.6906 -1.1963 19 6 2.1470 -0.0182 -2.3572 20 8 1.8577 1.1607 -2.4118 21 6 2.6466 -0.7151 -3.5653 22 6 2.9920 -2.0702 -3.5275 23 7 3.4291 -2.6650 -4.6191 24 7 3.5643 -2.0442 -5.7333 25 6 3.2701 -0.7620 -5.8714 26 8 3.4309 -0.1528 -7.0732 27 6 2.7939 -0.0391 -4.7807 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7199 1.2950 33 1 3.9824 -0.4628 0.4315 34 1 5.9629 -2.1008 1.2420 35 1 6.1098 -0.5395 2.0841 36 1 9.0473 -3.9041 5.9272 37 1 2.2490 -1.6318 -1.1527 38 1 2.8966 -2.6281 -2.6078 39 1 4.3061 0.2378 -7.2023 40 1 2.5477 1.0086 -4.8701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354258354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:12 Heat of formation + Delta-G solvation = -84.952572 kcal Electronic energy + Delta-G solvation = -25776.354234 eV Core-core repulsion = 21717.254494 eV Total energy + Delta-G solvation = -4059.099740 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.53600 -41.11292 -40.39281 -38.68793 -37.60394 -35.04291 -34.58475 -34.52453 -32.79767 -32.05629 -30.77233 -27.73185 -27.02978 -26.58716 -25.66746 -23.06037 -21.93603 -21.73561 -20.33999 -19.81594 -19.43743 -18.52628 -17.79454 -17.59340 -17.45211 -17.16558 -16.87213 -16.72339 -16.40473 -16.24160 -15.84260 -15.33741 -15.09088 -14.82327 -14.60758 -14.52674 -14.20532 -13.84872 -13.70667 -13.32239 -13.24274 -13.15675 -12.97893 -12.88812 -12.60204 -12.56953 -12.08176 -11.72054 -11.67438 -11.52033 -11.13819 -10.98933 -10.98196 -10.65061 -10.38260 -10.26205 -10.15513 -8.64792 -8.34246 -6.11384 -0.94775 -0.41623 1.27724 1.42492 1.46289 1.47745 1.57223 1.61113 1.68817 2.17808 2.24671 2.29550 2.39562 3.00186 3.02307 3.11903 3.32659 3.36377 3.53071 3.63625 3.91633 3.96705 4.05882 4.22972 4.30830 4.33111 4.53230 4.59021 4.59425 4.67657 4.78770 4.80331 4.95165 5.23729 5.29141 5.40466 5.42813 6.20225 6.20370 6.40567 6.44312 6.86028 7.07712 7.22345 7.39020 8.74722 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010641 B = 0.002454 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.634345 B =11406.291845 C =13452.830197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.143 3.857 3 H 0.096 0.904 4 C 0.113 3.887 5 N -0.714 5.714 6 C 0.538 3.462 7 O -0.560 6.560 8 C -0.133 4.133 9 S -0.148 6.148 10 C -0.546 4.546 11 H 0.082 0.918 12 C 0.014 3.986 13 N -0.910 5.910 14 Si 0.996 3.004 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.258 1.258 18 N -0.704 5.704 19 C 0.573 3.427 20 O -0.548 6.548 21 C -0.115 4.115 22 C 0.069 3.931 23 N -0.239 5.239 24 N -0.274 5.274 25 C 0.262 3.738 26 O -0.477 6.477 27 C -0.070 4.070 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.412 0.588 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.271 0.729 37 H 0.415 0.585 38 H 0.210 0.790 39 H 0.431 0.569 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.240 9.538 -21.553 27.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.039 3.961 3 H 0.114 0.886 4 C -0.011 4.011 5 N -0.369 5.369 6 C 0.323 3.677 7 O -0.438 6.438 8 C -0.284 4.284 9 S 0.079 5.921 10 C -0.694 4.694 11 H 0.100 0.900 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.818 3.182 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.182 1.182 18 N -0.357 5.357 19 C 0.358 3.642 20 O -0.426 6.426 21 C -0.129 4.129 22 C -0.097 4.097 23 N -0.081 5.081 24 N -0.126 5.126 25 C 0.075 3.925 26 O -0.286 6.286 27 C -0.101 4.101 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.249 0.751 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.254 0.746 38 H 0.226 0.774 39 H 0.294 0.706 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -15.453 8.064 -20.731 27.086 hybrid contribution 1.995 1.535 -0.588 2.585 sum -13.458 9.599 -21.320 26.978 Atomic orbital electron populations 1.22091 0.92485 1.03689 1.03443 1.21239 0.95895 0.97274 0.81687 0.88615 1.21782 0.79244 1.02179 0.97852 1.45716 1.07786 1.59992 1.23393 1.19943 0.88666 0.76975 0.82067 1.90713 1.70278 1.48305 1.34461 1.23392 0.95061 1.05659 1.04283 1.85547 1.05639 1.75039 1.25868 1.23195 0.91874 1.44252 1.10046 0.90018 1.26087 1.05030 0.93867 0.94090 1.70170 1.37324 1.36562 1.10628 0.84993 0.76142 0.78046 0.79056 1.19436 1.20380 1.18235 1.45949 1.66068 1.14963 1.08744 1.17823 0.77565 0.85925 0.82865 1.90829 1.50651 1.16239 1.84891 1.21189 1.01272 0.95175 0.95287 1.25019 0.92369 0.92063 1.00261 1.73054 1.10484 1.29594 0.94966 1.72748 1.12980 1.09041 1.17828 1.20844 0.95416 0.89577 0.86667 1.84774 1.40978 1.72900 1.29970 1.22950 0.93553 1.03493 0.90086 0.90791 0.89830 0.92254 0.89825 0.90003 0.75097 0.87064 0.87583 0.92017 0.74632 0.77382 0.70603 0.80181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 71.98 0.68 -0.77 16 2 C 0.14 1.52 2.73 44.99 0.12 1.64 16 3 H 0.10 1.22 7.58 -2.39 -0.02 1.20 16 4 C 0.11 1.68 5.23 86.38 0.45 2.13 16 5 N -0.71 -13.74 5.39 -463.07 -2.50 -16.23 16 6 C 0.54 17.20 7.85 87.66 0.69 17.89 16 7 O -0.56 -23.22 15.86 -3.02 -0.05 -23.27 16 8 C -0.13 -4.81 6.16 71.24 0.44 -4.37 16 9 S -0.15 -7.87 20.57 -56.49 -1.16 -9.04 16 10 C -0.55 -30.30 9.50 67.95 0.65 -29.66 16 11 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 12 C 0.01 0.79 5.49 84.86 0.47 1.26 16 13 N -0.91 -54.92 13.22 21.65 0.29 -54.64 16 14 Si 1.00 42.80 29.55 68.60 2.03 44.83 16 15 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 16 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 17 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 18 N -0.70 -6.30 4.48 -445.11 -1.99 -8.30 16 19 C 0.57 7.43 7.77 86.88 0.67 8.10 16 20 O -0.55 -10.64 16.15 -3.76 -0.06 -10.70 16 21 C -0.12 -1.38 5.92 -19.85 -0.12 -1.50 16 22 C 0.07 0.82 10.84 85.10 0.92 1.74 16 23 N -0.24 -4.45 11.48 -56.51 -0.65 -5.10 16 24 N -0.27 -5.43 11.50 -170.30 -1.96 -7.39 16 25 C 0.26 3.84 7.85 84.87 0.67 4.51 16 26 O -0.48 -5.17 13.57 -90.15 -1.22 -6.40 16 27 C -0.07 -0.86 9.72 22.90 0.22 -0.64 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.41 5.85 8.14 -92.70 -0.75 5.09 16 34 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 35 H 0.11 3.51 8.14 -2.40 -0.02 3.49 16 36 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 37 H 0.42 2.14 6.75 -92.71 -0.63 1.51 16 38 H 0.21 0.98 6.53 -2.91 -0.02 0.96 16 39 H 0.43 0.15 9.06 -74.06 -0.67 -0.52 16 40 H 0.18 1.77 7.79 -2.91 -0.02 1.74 16 Total: -1.00 -84.70 370.60 -2.33 -87.03 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -0.92 Total: 8.88 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 5.86 Total: 0.33 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -6.81 Total: -91.66 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -1.33 Total: -40.37 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -7.87 SS G_CDS: -1.16 Total: -9.04 kcal Total: -84.70 -2.33 -87.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354258354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.081 kcal (2) G-P(sol) polarization free energy of solvation -84.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds