Wall clock time and date at job start Sat Apr 11 2020 05:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36342 * 126.20356 * 2 1 4 4 C 1.36247 * 106.88926 * 179.97438 * 3 2 1 5 5 C 1.47248 * 126.16114 * 179.97438 * 4 3 2 6 6 O 1.21634 * 120.00249 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00123 * 180.02562 * 5 4 3 8 8 C 1.47067 * 136.05152 * 359.63320 * 7 5 4 9 9 C 1.53497 * 87.98534 * 153.13820 * 8 7 5 10 10 N 1.46501 * 114.38956 * 139.66712 * 9 8 7 11 11 C 1.34770 * 119.99678 * 111.31428 * 10 9 8 12 12 O 1.21279 * 120.00749 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99724 * 180.02562 * 11 10 9 14 14 S 1.80995 * 109.47386 * 180.02562 * 13 11 10 15 15 C 1.76199 * 100.00275 * 179.97438 * 14 13 11 16 16 H 1.08007 * 119.99742 * 0.02562 * 15 14 13 17 17 C 1.38798 * 120.00414 * 179.97438 * 15 14 13 18 18 N 1.31629 * 120.00021 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99733 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47228 * 89.99543 * 19 17 15 21 21 H 1.48500 * 109.47238 * 209.99537 * 19 17 15 22 22 H 1.48506 * 109.46969 * 329.99268 * 19 17 15 23 23 C 1.47066 * 136.06263 * 180.02562 * 7 5 4 24 24 N 1.36027 * 107.67222 * 0.24296 * 4 3 2 25 25 C 1.30705 * 108.94169 * 359.59486 * 24 4 3 26 26 O 1.35462 * 125.55012 * 180.15459 * 25 24 4 27 27 H 1.08996 * 109.47171 * 89.99855 * 1 2 3 28 28 H 1.08999 * 109.47432 * 209.99838 * 1 2 3 29 29 H 1.09003 * 109.47053 * 329.99995 * 1 2 3 30 30 H 1.07997 * 126.55313 * 359.97438 * 3 2 1 31 31 H 1.09007 * 113.46858 * 267.91303 * 8 7 5 32 32 H 1.08993 * 113.47208 * 38.35639 * 8 7 5 33 33 H 1.09006 * 114.20377 * 272.47966 * 9 8 7 34 34 H 0.96992 * 119.99736 * 291.31468 * 10 9 8 35 35 H 1.09006 * 109.47124 * 299.99739 * 13 11 10 36 36 H 1.08999 * 109.47058 * 59.99429 * 13 11 10 37 37 H 0.97005 * 119.99480 * 179.97438 * 18 17 15 38 38 H 1.09005 * 113.46156 * 321.64401 * 23 7 5 39 39 H 1.08998 * 113.46839 * 92.07769 * 23 7 5 40 40 H 0.96694 * 114.00020 * 270.28949 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2703 1.1002 0.0000 4 6 3.5561 0.6495 0.0006 5 6 4.7692 1.4841 0.0003 6 8 4.6733 2.6966 -0.0001 7 7 5.9860 0.9044 0.0004 8 6 6.5029 -0.4724 0.0074 9 6 7.7632 0.0548 -0.6925 10 7 9.0144 -0.5360 -0.2113 11 6 9.7232 -1.3571 -1.0112 12 8 9.3251 -1.6072 -2.1292 13 6 11.0100 -1.9654 -0.5160 14 16 11.7208 -3.0111 -1.8111 15 6 13.1720 -3.5757 -0.9866 16 1 13.3794 -3.2531 0.0231 17 6 14.0480 -4.4357 -1.6342 18 7 15.1324 -4.8571 -1.0183 19 14 13.6888 -4.9941 -3.3802 20 1 14.3044 -4.0433 -4.3405 21 1 14.2565 -6.3497 -3.5931 22 1 12.2199 -5.0334 -3.5950 23 6 7.3809 1.3701 0.0007 24 7 3.5171 -0.7102 -0.0046 25 6 2.2692 -1.0989 0.0005 26 8 1.8450 -2.3853 0.0007 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.9502 2.1316 -0.0004 31 1 6.6924 -0.8600 1.0084 32 1 5.9198 -1.1582 -0.6072 33 1 7.6911 0.0850 -1.7798 34 1 9.3326 -0.3363 0.6828 35 1 11.7135 -1.1719 -0.2635 36 1 10.8097 -2.5686 0.3694 37 1 15.7444 -5.4584 -1.4709 38 1 7.5444 2.2514 -0.6197 39 1 7.8040 1.4731 0.9999 40 1 1.7221 -2.7591 -0.8826 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356743930.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:16 Heat of formation + Delta-G solvation = 5.846289 kcal Electronic energy + Delta-G solvation = -25657.913262 eV Core-core repulsion = 21602.750856 eV Total energy + Delta-G solvation = -4055.162406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.65660 -40.68826 -39.05275 -37.96837 -37.55454 -34.72724 -33.75608 -32.42924 -30.35192 -29.59144 -28.64153 -27.40819 -26.19189 -25.60686 -23.66181 -21.98367 -21.63667 -20.63004 -19.58922 -18.78651 -17.85785 -17.75267 -16.93268 -16.85671 -16.37565 -16.08540 -16.03241 -15.05294 -15.04543 -14.94654 -14.80316 -14.70770 -14.15631 -13.57463 -13.50180 -13.37853 -13.25406 -13.11355 -12.85553 -12.78563 -12.43498 -12.37874 -12.05811 -11.27759 -11.25606 -11.00024 -10.75118 -10.61666 -10.34737 -10.33053 -9.85082 -9.56326 -9.14837 -9.04923 -8.98310 -8.83340 -8.49676 -6.91112 -6.28032 -3.99819 1.04912 1.63463 1.87312 2.40176 2.81697 2.88161 3.10636 3.24322 3.33919 3.41418 3.51434 3.68549 4.00875 4.07831 4.18756 4.33981 4.43020 4.46230 4.67298 4.72955 4.73857 4.85749 4.91310 5.11114 5.17878 5.28138 5.32111 5.35820 5.42380 5.62148 5.76477 5.88580 5.88769 5.98268 6.02087 6.46402 6.99913 7.17517 7.40268 7.55594 7.92484 7.94964 8.42501 8.43426 9.18155 10.81133 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020555 B = 0.001969 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.861872 B =14219.437680 C =15126.554539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.464 5.464 3 C 0.045 3.955 4 C -0.042 4.042 5 C 0.638 3.362 6 O -0.542 6.542 7 N -0.630 5.630 8 C 0.096 3.904 9 C 0.113 3.887 10 N -0.723 5.723 11 C 0.535 3.465 12 O -0.515 6.515 13 C -0.125 4.125 14 S -0.141 6.141 15 C -0.521 4.521 16 H 0.089 0.911 17 C 0.095 3.905 18 N -0.880 5.880 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.235 1.235 23 C 0.098 3.902 24 N -0.448 5.448 25 C 0.380 3.620 26 O -0.439 6.439 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.196 0.804 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.132 0.868 34 H 0.403 0.597 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.271 0.729 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.029 11.674 4.168 33.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.159 5.159 3 C -0.093 4.093 4 C -0.171 4.171 5 C 0.428 3.572 6 O -0.420 6.420 7 N -0.364 5.364 8 C -0.028 4.028 9 C 0.006 3.994 10 N -0.377 5.377 11 C 0.321 3.679 12 O -0.389 6.389 13 C -0.275 4.275 14 S 0.085 5.915 15 C -0.669 4.669 16 H 0.107 0.893 17 C -0.113 4.113 18 N -0.517 5.517 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.159 1.159 23 C -0.026 4.026 24 N -0.178 5.178 25 C 0.078 3.922 26 O -0.239 6.239 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.213 0.787 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.149 0.851 34 H 0.238 0.762 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -31.242 11.284 2.885 33.342 hybrid contribution -0.189 0.225 0.733 0.789 sum -31.430 11.509 3.618 33.666 Atomic orbital electron populations 1.22173 0.75571 1.05558 1.04194 1.45882 1.08506 1.06548 1.54918 1.22625 0.89565 0.92540 1.04531 1.20190 0.92990 0.89594 1.14338 1.16151 0.79886 0.85574 0.75626 1.90826 1.85857 1.13051 1.52225 1.48874 1.04225 1.10911 1.72345 1.23584 0.92540 0.85072 1.01621 1.22704 0.83345 0.92448 1.00895 1.45757 1.23521 1.49787 1.18611 1.20335 0.84854 0.77649 0.85028 1.90709 1.69726 1.58981 1.19438 1.23288 0.96277 1.03251 1.04716 1.84800 1.28111 1.57818 1.20777 1.22317 1.06428 1.34004 1.04149 0.89345 1.24716 0.93829 0.94470 0.98325 1.69941 1.11362 1.32557 1.37803 0.86734 0.81736 0.78900 0.84472 1.19221 1.19982 1.15894 1.23385 0.79242 0.98605 1.01337 1.70965 1.16626 1.10870 1.19317 1.20352 0.84061 0.81578 1.06161 1.84904 1.86646 1.17988 1.34403 0.89922 0.88757 0.88901 0.78667 0.89417 0.88662 0.85073 0.76182 0.88309 0.88253 0.91955 0.89376 0.89148 0.73833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.12 11.11 59.85 0.66 0.79 16 2 N -0.46 -2.98 3.16 -125.77 -0.40 -3.37 16 3 C 0.05 0.36 11.29 -16.26 -0.18 0.18 16 4 C -0.04 -0.47 6.94 -83.06 -0.58 -1.05 16 5 C 0.64 8.23 8.06 -12.60 -0.10 8.13 16 6 O -0.54 -8.14 17.65 5.25 0.09 -8.05 16 7 N -0.63 -7.27 3.69 -186.57 -0.69 -7.96 16 8 C 0.10 1.04 7.59 -8.51 -0.06 0.97 16 9 C 0.11 1.24 4.60 -67.80 -0.31 0.92 16 10 N -0.72 -8.32 5.39 -53.61 -0.29 -8.61 16 11 C 0.54 8.91 7.85 -10.99 -0.09 8.82 16 12 O -0.51 -10.60 15.45 5.56 0.09 -10.51 16 13 C -0.12 -2.30 6.16 36.01 0.22 -2.08 16 14 S -0.14 -3.51 18.55 -107.50 -1.99 -5.51 16 15 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 16 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 17 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 18 N -0.88 -26.41 13.97 55.49 0.78 -25.64 16 19 Si 0.86 21.64 27.74 -169.99 -4.71 16.93 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.23 -5.91 6.74 56.52 0.38 -5.53 16 23 C 0.10 0.93 8.38 -8.50 -0.07 0.86 16 24 N -0.45 -5.11 9.80 -11.22 -0.11 -5.22 16 25 C 0.38 3.33 9.03 -89.16 -0.81 2.52 16 26 O -0.44 -2.88 13.55 -18.08 -0.24 -3.12 16 27 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 28 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 30 H 0.20 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 1.14 7.43 -51.93 -0.39 0.76 16 33 H 0.13 1.67 7.45 -51.93 -0.39 1.29 16 34 H 0.40 3.39 8.76 -40.82 -0.36 3.03 16 35 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 36 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.68 8.13 -51.93 -0.42 0.26 16 40 H 0.40 0.68 9.06 45.56 0.41 1.09 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -39.49 368.68 -7.13 -46.62 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -4.10 Total: 0.68 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -1.10 Total: 8.21 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.71 Total: -50.80 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.07 Total: -21.68 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -39.49 -7.13 -46.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356743930.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.466 kcal (2) G-P(sol) polarization free energy of solvation -39.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds