Wall clock time and date at job start Sat Apr 11 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36342 * 126.20356 * 2 1 4 4 C 1.36247 * 106.88926 * 179.97438 * 3 2 1 5 5 C 1.47248 * 126.16114 * 179.97438 * 4 3 2 6 6 O 1.21634 * 120.00249 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00123 * 180.02562 * 5 4 3 8 8 C 1.47067 * 136.05152 * 359.63320 * 7 5 4 9 9 C 1.53497 * 87.98534 * 153.13820 * 8 7 5 10 10 N 1.46501 * 114.38956 * 139.66712 * 9 8 7 11 11 C 1.34770 * 119.99678 * 111.31428 * 10 9 8 12 12 O 1.21279 * 120.00749 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99724 * 180.02562 * 11 10 9 14 14 S 1.80995 * 109.47386 * 180.02562 * 13 11 10 15 15 C 1.76199 * 100.00275 * 179.97438 * 14 13 11 16 16 H 1.08007 * 119.99742 * 0.02562 * 15 14 13 17 17 C 1.38798 * 120.00414 * 179.97438 * 15 14 13 18 18 N 1.31629 * 120.00021 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99733 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47228 * 89.99543 * 19 17 15 21 21 H 1.48500 * 109.47238 * 209.99537 * 19 17 15 22 22 H 1.48506 * 109.46969 * 329.99268 * 19 17 15 23 23 C 1.47066 * 136.06263 * 180.02562 * 7 5 4 24 24 N 1.36027 * 107.67222 * 0.24296 * 4 3 2 25 25 C 1.30705 * 108.94169 * 359.59486 * 24 4 3 26 26 O 1.35462 * 125.55012 * 180.15459 * 25 24 4 27 27 H 1.08996 * 109.47171 * 89.99855 * 1 2 3 28 28 H 1.08999 * 109.47432 * 209.99838 * 1 2 3 29 29 H 1.09003 * 109.47053 * 329.99995 * 1 2 3 30 30 H 1.07997 * 126.55313 * 359.97438 * 3 2 1 31 31 H 1.09007 * 113.46858 * 267.91303 * 8 7 5 32 32 H 1.08993 * 113.47208 * 38.35639 * 8 7 5 33 33 H 1.09006 * 114.20377 * 272.47966 * 9 8 7 34 34 H 0.96992 * 119.99736 * 291.31468 * 10 9 8 35 35 H 1.09006 * 109.47124 * 299.99739 * 13 11 10 36 36 H 1.08999 * 109.47058 * 59.99429 * 13 11 10 37 37 H 0.97005 * 119.99480 * 179.97438 * 18 17 15 38 38 H 1.09005 * 113.46156 * 321.64401 * 23 7 5 39 39 H 1.08998 * 113.46839 * 92.07769 * 23 7 5 40 40 H 0.96694 * 114.00020 * 270.28949 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2703 1.1002 0.0000 4 6 3.5561 0.6495 0.0006 5 6 4.7692 1.4841 0.0003 6 8 4.6733 2.6966 -0.0001 7 7 5.9860 0.9044 0.0004 8 6 6.5029 -0.4724 0.0074 9 6 7.7632 0.0548 -0.6925 10 7 9.0144 -0.5360 -0.2113 11 6 9.7232 -1.3571 -1.0112 12 8 9.3251 -1.6072 -2.1292 13 6 11.0100 -1.9654 -0.5160 14 16 11.7208 -3.0111 -1.8111 15 6 13.1720 -3.5757 -0.9866 16 1 13.3794 -3.2531 0.0231 17 6 14.0480 -4.4357 -1.6342 18 7 15.1324 -4.8571 -1.0183 19 14 13.6888 -4.9941 -3.3802 20 1 14.3044 -4.0433 -4.3405 21 1 14.2565 -6.3497 -3.5931 22 1 12.2199 -5.0334 -3.5950 23 6 7.3809 1.3701 0.0007 24 7 3.5171 -0.7102 -0.0046 25 6 2.2692 -1.0989 0.0005 26 8 1.8450 -2.3853 0.0007 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.9502 2.1316 -0.0004 31 1 6.6924 -0.8600 1.0084 32 1 5.9198 -1.1582 -0.6072 33 1 7.6911 0.0850 -1.7798 34 1 9.3326 -0.3363 0.6828 35 1 11.7135 -1.1719 -0.2635 36 1 10.8097 -2.5686 0.3694 37 1 15.7444 -5.4584 -1.4709 38 1 7.5444 2.2514 -0.6197 39 1 7.8040 1.4731 0.9999 40 1 1.7221 -2.7591 -0.8826 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356743930.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:15 Heat of formation + Delta-G solvation = -28.279087 kcal Electronic energy + Delta-G solvation = -25659.393049 eV Core-core repulsion = 21602.750856 eV Total energy + Delta-G solvation = -4056.642193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.25813 -41.65127 -40.25284 -38.86928 -38.21490 -35.27868 -34.90479 -34.63407 -31.51972 -30.41311 -29.54365 -27.97654 -27.78359 -26.99065 -24.47132 -22.71094 -22.37480 -21.83383 -20.35998 -19.81123 -19.38769 -18.52306 -18.02383 -17.63088 -17.57394 -17.06108 -16.92045 -16.58000 -16.33824 -16.16153 -15.57356 -15.38950 -15.27244 -14.96268 -14.73603 -14.44955 -14.39950 -13.79570 -13.63055 -13.56363 -13.48824 -13.31028 -13.18242 -12.98716 -12.94693 -12.61860 -12.21823 -11.84593 -11.57145 -11.21002 -11.14167 -10.95784 -10.87112 -10.49062 -10.14800 -9.95418 -9.55711 -8.95353 -8.48563 -6.18597 0.39709 0.99151 1.02019 1.33885 1.34029 1.46951 1.53648 1.54784 1.72129 2.24863 2.28013 2.40082 2.70123 2.77026 2.89854 3.24800 3.50641 3.66135 3.77125 3.88438 3.99302 4.09997 4.25350 4.30793 4.38368 4.42688 4.54114 4.56302 4.60771 4.69250 4.77006 4.88713 4.91580 5.21929 5.41724 5.59658 5.73863 6.15081 6.42435 6.52504 6.54894 6.59138 6.96966 7.04268 7.19649 8.63644 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020555 B = 0.001969 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.861872 B =14219.437680 C =15126.554539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.455 5.455 3 C 0.064 3.936 4 C -0.082 4.082 5 C 0.633 3.367 6 O -0.573 6.573 7 N -0.636 5.636 8 C 0.106 3.894 9 C 0.116 3.884 10 N -0.694 5.694 11 C 0.542 3.458 12 O -0.558 6.558 13 C -0.111 4.111 14 S -0.177 6.177 15 C -0.527 4.527 16 H 0.064 0.936 17 C 0.044 3.956 18 N -0.917 5.917 19 Si 0.914 3.086 20 H -0.263 1.263 21 H -0.261 1.261 22 H -0.236 1.236 23 C 0.105 3.895 24 N -0.484 5.484 25 C 0.377 3.623 26 O -0.444 6.444 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.220 0.780 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.423 0.577 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.276 0.724 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.322 12.365 4.530 35.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.148 5.148 3 C -0.076 4.076 4 C -0.210 4.210 5 C 0.424 3.576 6 O -0.453 6.453 7 N -0.369 5.369 8 C -0.019 4.019 9 C 0.009 3.991 10 N -0.349 5.349 11 C 0.328 3.672 12 O -0.436 6.436 13 C -0.262 4.262 14 S 0.049 5.951 15 C -0.675 4.675 16 H 0.082 0.918 17 C -0.161 4.161 18 N -0.555 5.555 19 Si 0.736 3.264 20 H -0.188 1.188 21 H -0.185 1.185 22 H -0.160 1.160 23 C -0.018 4.018 24 N -0.215 5.215 25 C 0.074 3.926 26 O -0.247 6.247 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.131 0.869 30 H 0.236 0.764 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.262 0.738 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.136 0.864 40 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -33.561 11.970 3.284 35.783 hybrid contribution 0.369 0.061 0.733 0.823 sum -33.192 12.030 4.017 35.533 Atomic orbital electron populations 1.22544 0.72641 1.06952 1.05894 1.46085 1.10071 1.05332 1.53297 1.22994 0.88788 0.93754 1.02095 1.20153 0.93537 0.89795 1.17491 1.16456 0.80608 0.85475 0.75070 1.90788 1.86387 1.14175 1.53999 1.48943 1.04711 1.11301 1.71935 1.23510 0.91717 0.84671 1.01969 1.22604 0.82809 0.93636 1.00092 1.45410 1.22887 1.47801 1.18761 1.19972 0.84445 0.78049 0.84731 1.90707 1.70647 1.60877 1.21356 1.23278 0.97303 1.02880 1.02756 1.84740 1.26831 1.59705 1.23818 1.22475 1.07888 1.33735 1.03369 0.91801 1.25563 0.93754 0.94727 1.02049 1.70021 1.12409 1.33559 1.39555 0.85871 0.81503 0.79071 0.79953 1.18793 1.18546 1.15963 1.23468 0.78241 0.97478 1.02614 1.70829 1.18600 1.11206 1.20846 1.20415 0.84031 0.82573 1.05552 1.84864 1.86376 1.17162 1.36318 0.88035 0.88001 0.86945 0.76353 0.87977 0.90131 0.86961 0.73847 0.86424 0.86420 0.91456 0.89180 0.86371 0.71490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.04 11.11 127.77 1.42 1.46 16 2 N -0.45 -4.94 3.16 -662.75 -2.09 -7.03 16 3 C 0.06 0.93 11.29 83.53 0.94 1.87 16 4 C -0.08 -1.81 6.94 40.40 0.28 -1.53 16 5 C 0.63 16.23 8.06 86.61 0.70 16.93 16 6 O -0.57 -17.14 17.65 -4.14 -0.07 -17.21 16 7 N -0.64 -14.25 3.69 -862.43 -3.18 -17.43 16 8 C 0.11 2.18 7.59 83.18 0.63 2.81 16 9 C 0.12 2.38 4.60 45.47 0.21 2.59 16 10 N -0.69 -14.48 5.39 -441.91 -2.38 -16.86 16 11 C 0.54 17.27 7.85 87.66 0.69 17.96 16 12 O -0.56 -22.77 15.45 -3.03 -0.05 -22.81 16 13 C -0.11 -3.93 6.16 71.24 0.44 -3.49 16 14 S -0.18 -8.76 18.55 -56.49 -1.05 -9.81 16 15 C -0.53 -30.24 10.04 67.95 0.68 -29.56 16 16 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 17 C 0.04 2.58 5.50 84.86 0.47 3.05 16 18 N -0.92 -55.60 13.97 21.65 0.30 -55.30 16 19 Si 0.91 44.77 27.74 68.60 1.90 46.68 16 20 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.24 -11.50 6.74 99.48 0.67 -10.83 16 23 C 0.10 1.81 8.38 83.18 0.70 2.51 16 24 N -0.48 -10.91 9.80 -303.16 -2.97 -13.88 16 25 C 0.38 6.17 9.03 179.84 1.62 7.79 16 26 O -0.44 -5.20 13.55 -87.60 -1.19 -6.39 16 27 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 28 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.22 1.95 8.06 -2.91 -0.02 1.92 16 31 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.08 1.94 7.43 -2.39 -0.02 1.93 16 33 H 0.11 2.86 7.45 -2.38 -0.02 2.84 16 34 H 0.42 5.71 8.76 -92.71 -0.81 4.90 16 35 H 0.12 3.75 8.14 -2.39 -0.02 3.73 16 36 H 0.12 3.76 8.14 -2.40 -0.02 3.75 16 37 H 0.28 15.50 8.31 -92.70 -0.77 14.73 16 38 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.12 1.42 8.13 -2.39 -0.02 1.40 16 40 H 0.42 0.80 9.06 -74.06 -0.67 0.12 16 Total: -1.00 -87.44 368.68 -2.41 -89.85 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -0.41 Total: 7.81 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 8.78 Total: 22.40 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -10.33 Total: -110.51 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -1.31 Total: -46.42 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.68 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.05 Total: -9.81 kcal Total: -87.44 -2.41 -89.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356743930.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.572 kcal (2) G-P(sol) polarization free energy of solvation -87.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds