Wall clock time and date at job start Sat Apr 11 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47251 * 2 1 4 4 C 1.50698 * 109.47274 * 239.99653 * 2 1 3 5 5 H 1.08007 * 119.99854 * 275.00599 * 4 2 1 6 6 C 1.37872 * 119.99991 * 95.00163 * 4 2 1 7 7 N 1.31514 * 120.00104 * 184.91470 * 6 4 2 8 8 Si 1.86797 * 120.00022 * 4.91759 * 6 4 2 9 9 H 1.48502 * 109.46969 * 84.83416 * 8 6 4 10 10 H 1.48502 * 109.47351 * 204.83194 * 8 6 4 11 11 H 1.48500 * 109.47360 * 324.83605 * 8 6 4 12 12 N 1.46502 * 109.46717 * 119.99736 * 2 1 3 13 13 C 1.46499 * 119.99925 * 60.00030 * 12 2 1 14 14 S 1.65594 * 120.00168 * 239.99853 * 12 2 1 15 15 O 1.42101 * 106.39912 * 336.46188 * 14 12 2 16 16 O 1.42102 * 106.40587 * 203.54433 * 14 12 2 17 17 N 1.65597 * 107.21855 * 89.99841 * 14 12 2 18 18 C 1.46502 * 119.99687 * 65.00390 * 17 14 12 19 19 C 1.50696 * 109.47206 * 165.00027 * 18 17 14 20 20 C 1.40067 * 119.03119 * 89.99633 * 19 18 17 21 21 C 1.35600 * 121.94602 * 180.25671 * 20 19 18 22 22 C 1.40835 * 119.38802 * 359.50286 * 21 20 19 23 23 N 1.31024 * 138.56407 * 180.18047 * 22 21 20 24 24 O 1.21468 * 109.08899 * 180.25212 * 23 22 21 25 25 N 1.21468 * 116.28580 * 359.97438 * 24 23 22 26 26 C 1.31017 * 109.09084 * 0.02562 * 25 24 23 27 27 C 1.35600 * 119.02933 * 269.97545 * 19 18 17 28 28 H 1.09003 * 109.47136 * 294.98600 * 1 2 3 29 29 H 1.09004 * 109.46745 * 54.97833 * 1 2 3 30 30 H 1.09001 * 109.47305 * 174.98009 * 1 2 3 31 31 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47129 * 269.99776 * 13 12 2 33 33 H 1.08999 * 109.47530 * 29.99731 * 13 12 2 34 34 H 1.09003 * 109.47263 * 149.99696 * 13 12 2 35 35 H 0.96997 * 120.00412 * 244.99888 * 17 14 12 36 36 H 1.09003 * 109.47301 * 45.00049 * 18 17 14 37 37 H 1.09001 * 109.47379 * 285.00058 * 18 17 14 38 38 H 1.07997 * 119.02830 * 359.97438 * 20 19 18 39 39 H 1.08000 * 120.30126 * 179.72217 * 21 20 19 40 40 H 1.08006 * 120.29950 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1355 -1.7856 -1.2289 6 6 2.3604 0.0120 -2.3580 7 7 2.7061 -0.6133 -3.4621 8 14 2.3137 1.8789 -2.3174 9 1 3.5993 2.3947 -1.7822 10 1 2.1060 2.3989 -3.6928 11 1 1.1988 2.3274 -1.4450 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0931 1.4281 14 16 2.9703 0.1142 2.2863 15 8 3.5794 1.1829 1.5748 16 8 3.7117 -0.8789 2.9816 17 7 1.9606 0.8091 3.3997 18 6 1.1508 -0.0351 4.2817 19 6 0.6166 0.7950 5.4203 20 6 -0.6206 1.4349 5.2730 21 6 -1.1544 2.2000 6.2571 22 6 -0.4551 2.3525 7.4701 23 7 -0.6029 2.9653 8.6187 24 8 0.3625 2.7348 9.3190 25 7 1.2193 2.0218 8.8362 26 6 0.8557 1.6738 7.6266 27 6 1.3478 0.9002 6.5575 28 1 -0.3633 0.4341 0.9315 29 1 -0.3633 0.5898 -0.8416 30 1 -0.3634 -1.0237 -0.0899 31 1 2.9372 -0.1051 -4.2553 32 1 0.7374 -2.1443 1.9994 33 1 1.5294 -2.5969 0.4710 34 1 2.4627 -2.5819 1.9865 35 1 1.9054 1.7751 3.4681 36 1 1.7668 -0.8422 4.6782 37 1 0.3187 -0.4566 3.7177 38 1 -1.1634 1.3191 4.3466 39 1 -2.1086 2.6850 6.1133 40 1 2.2984 0.3948 6.6428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364076526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:21 Heat of formation + Delta-G solvation = 69.852935 kcal Electronic energy + Delta-G solvation = -27497.890895 eV Core-core repulsion = 23445.504026 eV Total energy + Delta-G solvation = -4052.386870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -46.99025 -39.60668 -36.86325 -36.41533 -35.71925 -35.38484 -35.11488 -33.11251 -32.52121 -31.56736 -30.02905 -27.51011 -25.76846 -25.54507 -25.23505 -23.63964 -21.73126 -20.81498 -19.32877 -19.26119 -18.94194 -18.35565 -17.58312 -17.39901 -16.82259 -16.20095 -15.65567 -15.25737 -15.02518 -14.85331 -14.30172 -13.72619 -13.66120 -13.45077 -13.26243 -13.07656 -12.81687 -12.73650 -12.54414 -12.22712 -12.13591 -12.06616 -11.94195 -11.76906 -11.64778 -11.45683 -11.43475 -11.20111 -10.89337 -10.74593 -10.42122 -10.18038 -9.85769 -9.64572 -9.42513 -9.01496 -8.65827 -8.16964 -6.22558 -4.23599 -0.43366 0.62167 1.03761 1.53966 2.71445 2.78935 3.05857 3.23705 3.30513 3.37432 3.38919 3.42517 3.93056 4.06371 4.23831 4.32372 4.37257 4.66984 4.80921 4.82894 5.04997 5.10368 5.14010 5.20636 5.41127 5.51328 5.58368 5.71146 5.86297 5.92434 5.97349 6.04679 6.25512 6.31207 6.49084 6.56089 6.80818 6.94032 7.10225 7.42524 7.58259 8.08198 8.36782 8.81579 9.38589 10.89187 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.021326 B = 0.002948 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.611413 B = 9495.390661 C = 9810.577711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.234 3.766 3 H 0.056 0.944 4 C -0.518 4.518 5 H 0.083 0.917 6 C 0.079 3.921 7 N -0.887 5.887 8 Si 0.867 3.133 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.982 5.982 13 C 0.092 3.908 14 S 2.769 3.231 15 O -0.973 6.973 16 O -0.990 6.990 17 N -1.133 6.133 18 C 0.158 3.842 19 C -0.059 4.059 20 C -0.067 4.067 21 C -0.071 4.071 22 C 0.020 3.980 23 N -0.348 5.348 24 O 0.377 5.623 25 N -0.343 5.343 26 C 0.017 3.983 27 C -0.049 4.049 28 H 0.025 0.975 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.267 0.733 32 H 0.038 0.962 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.413 0.587 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.216 3.105 19.385 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.131 3.869 3 H 0.074 0.926 4 C -0.558 4.558 5 H 0.101 0.899 6 C -0.126 4.126 7 N -0.524 5.524 8 Si 0.693 3.307 9 H -0.189 1.189 10 H -0.212 1.212 11 H -0.189 1.189 12 N -0.824 5.824 13 C -0.054 4.054 14 S 2.779 3.221 15 O -0.956 6.956 16 O -0.974 6.974 17 N -0.891 5.891 18 C 0.032 3.968 19 C -0.065 4.065 20 C -0.089 4.089 21 C -0.092 4.092 22 C -0.133 4.133 23 N -0.070 5.070 24 O 0.138 5.862 25 N -0.064 5.064 26 C -0.136 4.136 27 C -0.071 4.071 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.246 0.754 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.168 0.832 39 H 0.166 0.834 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.063 3.398 20.274 22.082 hybrid contribution -0.523 1.090 -0.891 1.502 sum -8.586 4.488 19.383 21.670 Atomic orbital electron populations 1.22237 0.98176 1.01272 0.98844 1.19119 0.91235 0.93228 0.83361 0.92599 1.21128 1.44344 0.95976 0.94386 0.89922 1.24996 0.93814 0.98484 0.95303 1.69880 1.44622 1.36145 1.01738 0.87016 0.80158 0.86250 0.77250 1.18946 1.21218 1.18876 1.57918 1.69925 1.19912 1.34671 1.21384 0.98801 0.82190 1.03024 1.02418 0.73812 0.73319 0.72567 1.93620 1.74121 1.56179 1.71722 1.93535 1.68994 1.60428 1.74396 1.56410 1.62411 1.17464 1.52816 1.20215 0.95858 0.92012 0.88715 1.19718 0.94244 0.97774 0.94748 1.21011 0.94501 0.94116 0.99294 1.19948 1.00397 1.00152 0.88662 1.22962 0.96296 0.98429 0.95600 1.75237 1.08200 1.19717 1.03883 1.85382 1.17724 1.45135 1.37930 1.75252 1.12656 1.08603 1.09878 1.22866 0.94765 1.02475 0.93455 1.19940 1.00626 0.97268 0.89224 0.95584 0.92749 0.92772 0.92258 0.94384 0.89568 0.91513 0.75385 0.88916 0.89803 0.83169 0.83371 0.83097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.10 37.16 0.34 -2.26 16 2 C 0.23 4.99 2.28 -69.08 -0.16 4.83 16 3 H 0.06 1.28 4.06 -51.93 -0.21 1.07 16 4 C -0.52 -13.45 8.72 -34.44 -0.30 -13.75 16 5 H 0.08 2.28 6.82 -52.48 -0.36 1.93 16 6 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 7 N -0.89 -25.85 13.96 55.43 0.77 -25.07 16 8 Si 0.87 20.97 26.99 -169.99 -4.59 16.39 16 9 H -0.26 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.26 -5.88 6.82 56.52 0.39 -5.50 16 12 N -0.98 -17.87 3.12 -115.85 -0.36 -18.23 16 13 C 0.09 1.41 9.81 59.85 0.59 2.00 16 14 S 2.77 48.36 6.14 -107.50 -0.66 47.70 16 15 O -0.97 -21.05 16.70 -57.17 -0.95 -22.01 16 16 O -0.99 -18.62 16.21 -57.17 -0.93 -19.55 16 17 N -1.13 -13.39 6.05 -11.65 -0.07 -13.46 16 18 C 0.16 1.40 6.31 -5.19 -0.03 1.37 16 19 C -0.06 -0.47 5.24 -104.88 -0.55 -1.02 16 20 C -0.07 -0.45 9.51 -39.84 -0.38 -0.83 16 21 C -0.07 -0.52 10.08 -39.54 -0.40 -0.92 16 22 C 0.02 0.19 7.76 -83.03 -0.64 -0.45 16 23 N -0.35 -3.67 12.29 31.88 0.39 -3.28 16 24 O 0.38 3.90 11.67 26.94 0.31 4.21 16 25 N -0.34 -3.78 12.29 31.88 0.39 -3.38 16 26 C 0.02 0.17 7.76 -83.03 -0.64 -0.47 16 27 C -0.05 -0.44 9.65 -39.54 -0.38 -0.82 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.92 7.84 -51.93 -0.41 0.52 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 1.45 6.56 -51.93 -0.34 1.11 16 34 H 0.07 0.98 7.02 -51.93 -0.36 0.62 16 35 H 0.41 4.29 8.64 -34.47 -0.30 3.99 16 36 H 0.09 0.80 7.66 -51.93 -0.40 0.41 16 37 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 38 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 351.73 15.07 5.30 5.30 Total: -1.00 -33.47 351.73 -7.53 -41.01 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -4.48 Total: 0.64 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -2.66 Total: -10.25 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: 1.13 Total: -63.43 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -1.57 Total: -37.35 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.59 Total: 16.39 kcal Atomic # 16 Polarization: 48.36 SS G_CDS: -0.66 Total: 47.70 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.47 -7.53 -41.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364076526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.859 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds