Wall clock time and date at job start Sat Apr 11 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 C 1.50701 * 109.47046 * 120.00042 * 2 1 3 5 5 H 1.08007 * 120.00171 * 120.00184 * 4 2 1 6 6 C 1.37878 * 120.00079 * 299.99866 * 4 2 1 7 7 N 1.31509 * 119.99852 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47175 * 59.99814 * 8 6 4 10 10 H 1.48499 * 109.47318 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46851 * 299.99837 * 8 6 4 12 12 N 1.46498 * 109.47138 * 239.99661 * 2 1 3 13 13 C 1.46506 * 120.00239 * 300.00351 * 12 2 1 14 14 S 1.65597 * 119.99910 * 119.72126 * 12 2 1 15 15 O 1.42101 * 106.40154 * 23.82013 * 14 12 2 16 16 O 1.42106 * 106.40098 * 156.73670 * 14 12 2 17 17 N 1.65596 * 107.22389 * 270.27980 * 14 12 2 18 18 C 1.46498 * 119.99862 * 64.99463 * 17 14 12 19 19 C 1.50705 * 109.47089 * 165.00621 * 18 17 14 20 20 C 1.40063 * 119.02986 * 89.99979 * 19 18 17 21 21 C 1.35597 * 121.94652 * 179.97438 * 20 19 18 22 22 C 1.40840 * 119.39077 * 0.03134 * 21 20 19 23 23 N 1.31016 * 138.57094 * 179.97438 * 22 21 20 24 24 O 1.21478 * 109.08864 * 180.02562 * 23 22 21 25 25 N 1.21467 * 116.28820 * 0.02562 * 24 23 22 26 26 C 1.31023 * 109.08427 * 0.02562 * 25 24 23 27 27 C 1.35595 * 119.02345 * 269.73071 * 19 18 17 28 28 H 1.09007 * 109.47037 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47126 * 299.99981 * 1 2 3 30 30 H 1.08993 * 109.47037 * 60.00055 * 1 2 3 31 31 H 0.97007 * 120.00297 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46892 * 269.72399 * 13 12 2 33 33 H 1.09000 * 109.46803 * 29.71572 * 13 12 2 34 34 H 1.09000 * 109.47214 * 149.72366 * 13 12 2 35 35 H 0.97000 * 119.99918 * 245.00321 * 17 14 12 36 36 H 1.09005 * 109.47365 * 285.00417 * 18 17 14 37 37 H 1.09000 * 109.47259 * 45.00301 * 18 17 14 38 38 H 1.08004 * 119.02698 * 359.97438 * 20 19 18 39 39 H 1.07998 * 120.30793 * 180.02562 * 21 20 19 40 40 H 1.08005 * 120.30936 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.8075 -1.1190 4.0078 10 1 1.8269 -0.4199 5.2205 11 1 1.8279 -2.5197 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4280 14 16 2.9647 0.1161 -2.2897 15 8 3.5762 1.1845 -1.5799 16 8 3.7037 -0.8757 -2.9894 17 7 1.9494 0.8114 -3.3978 18 6 1.0189 1.8630 -2.9800 19 6 0.4862 2.5750 -4.1967 20 6 -0.6818 2.0990 -4.8057 21 6 -1.2131 2.6941 -5.9022 22 6 -0.5772 3.8244 -6.4515 23 7 -0.7438 4.6573 -7.4490 24 8 0.1546 5.4749 -7.4381 25 7 0.9779 5.3577 -6.5528 26 6 0.6619 4.3275 -5.8075 27 6 1.1489 3.6607 -4.6664 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 0.7089 1.1614 3.4844 32 1 2.4182 -2.7377 -0.9758 33 1 0.6926 -2.3015 -0.9803 34 1 1.6190 -2.2841 -2.5002 35 1 1.9707 0.5224 -4.3235 36 1 0.1911 1.4175 -2.4282 37 1 1.5397 2.5760 -2.3407 38 1 -1.1740 1.2323 -4.3896 39 1 -2.1154 2.3050 -6.3502 40 1 2.0448 4.0080 -4.1731 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364076531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:23 Heat of formation + Delta-G solvation = 69.417788 kcal Electronic energy + Delta-G solvation = -27533.041395 eV Core-core repulsion = 23480.635656 eV Total energy + Delta-G solvation = -4052.405739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -46.89475 -39.49342 -36.80828 -36.26463 -35.60622 -35.31291 -35.01877 -33.01710 -32.64366 -31.46327 -29.19380 -27.38432 -25.68025 -25.44409 -25.21928 -23.51151 -21.62722 -20.88034 -19.25659 -19.16891 -18.89621 -18.25473 -17.45024 -17.00397 -16.41348 -16.26976 -15.42348 -15.21231 -14.90012 -14.74448 -14.38214 -13.72219 -13.50626 -13.29946 -13.16925 -13.10338 -12.91355 -12.63916 -12.13597 -12.09950 -12.02381 -11.81722 -11.70253 -11.54395 -11.44620 -11.34874 -11.28427 -11.01802 -10.86437 -10.53730 -10.36529 -10.09927 -10.05808 -9.48135 -9.34290 -8.90716 -8.51078 -8.07006 -6.13577 -4.19869 -0.33170 0.72382 1.12931 1.63845 2.81533 2.89829 3.15514 3.26832 3.31571 3.34751 3.46966 3.48705 4.01489 4.18371 4.34963 4.36056 4.49254 4.78319 4.91521 4.93299 5.17774 5.22912 5.26269 5.37713 5.50715 5.56077 5.68350 5.80681 6.00510 6.07542 6.07898 6.30788 6.54054 6.65594 6.69980 6.88444 6.99681 7.38321 7.54957 7.71307 7.96235 8.17441 8.20244 8.82056 9.46381 10.92077 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019186 B = 0.002921 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.077602 B = 9584.884820 C =10053.250639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.266 3.734 3 H 0.060 0.940 4 C -0.521 4.521 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.989 5.989 13 C 0.110 3.890 14 S 2.778 3.222 15 O -0.971 6.971 16 O -0.993 6.993 17 N -1.132 6.132 18 C 0.153 3.847 19 C -0.057 4.057 20 C -0.065 4.065 21 C -0.074 4.074 22 C 0.020 3.980 23 N -0.350 5.350 24 O 0.376 5.624 25 N -0.343 5.343 26 C 0.017 3.983 27 C -0.049 4.049 28 H 0.035 0.965 29 H 0.094 0.906 30 H 0.011 0.989 31 H 0.264 0.736 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.411 0.589 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.277 2.676 -15.462 16.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.163 3.837 3 H 0.077 0.923 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.833 5.833 13 C -0.036 4.036 14 S 2.787 3.213 15 O -0.954 6.954 16 O -0.977 6.977 17 N -0.890 5.890 18 C 0.027 3.973 19 C -0.063 4.063 20 C -0.087 4.087 21 C -0.094 4.094 22 C -0.133 4.133 23 N -0.072 5.072 24 O 0.137 5.863 25 N -0.064 5.064 26 C -0.135 4.135 27 C -0.071 4.071 28 H 0.054 0.946 29 H 0.113 0.887 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.243 0.757 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.168 0.832 39 H 0.166 0.834 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.321 3.781 -15.895 17.183 hybrid contribution -0.227 -1.229 1.060 1.639 sum -5.548 2.552 -14.835 16.042 Atomic orbital electron populations 1.22199 0.98309 0.99916 1.00586 1.18763 0.91220 0.93040 0.80661 0.92264 1.21279 1.31718 1.13077 0.89996 0.91988 1.24889 0.94916 0.94982 0.98987 1.69825 1.36475 1.22617 1.23975 0.86559 0.79397 0.79581 0.81891 1.20151 1.21212 1.20251 1.57704 1.70212 1.19877 1.35472 1.21144 1.01728 0.81913 0.98824 1.02042 0.73545 0.73252 0.72476 1.93606 1.73569 1.55937 1.72336 1.93562 1.69469 1.60047 1.74629 1.56325 1.57060 1.51278 1.24344 1.20352 0.94081 0.89913 0.92944 1.19747 0.94653 0.94727 0.97137 1.21014 0.94416 0.99412 0.93857 1.19926 1.00625 0.92431 0.96433 1.22952 0.96954 0.99701 0.93648 1.75225 1.09945 1.02442 1.19633 1.85377 1.22363 1.40390 1.38144 1.75252 1.12721 1.17585 1.00866 1.22880 0.96063 0.94412 1.00121 1.19976 1.00556 0.94299 0.92260 0.94611 0.88741 0.96971 0.92597 0.93253 0.90914 0.93256 0.75699 0.89167 0.88584 0.83216 0.83449 0.83032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.95 37.16 0.33 -2.69 16 2 C 0.27 5.92 2.62 -69.08 -0.18 5.74 16 3 H 0.06 1.46 6.91 -51.93 -0.36 1.10 16 4 C -0.52 -13.31 8.37 -34.44 -0.29 -13.60 16 5 H 0.06 1.59 7.65 -52.48 -0.40 1.19 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -23.53 11.32 55.43 0.63 -22.90 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.99 -18.56 3.12 -115.85 -0.36 -18.92 16 13 C 0.11 1.79 9.53 59.85 0.57 2.36 16 14 S 2.78 49.17 6.09 -107.50 -0.65 48.52 16 15 O -0.97 -20.85 16.18 -57.17 -0.92 -21.77 16 16 O -0.99 -19.21 17.21 -57.17 -0.98 -20.19 16 17 N -1.13 -14.03 6.05 -11.65 -0.07 -14.10 16 18 C 0.15 1.73 6.31 -5.19 -0.03 1.70 16 19 C -0.06 -0.54 5.24 -104.88 -0.55 -1.09 16 20 C -0.06 -0.50 9.51 -39.84 -0.38 -0.88 16 21 C -0.07 -0.60 10.08 -39.54 -0.40 -1.00 16 22 C 0.02 0.21 7.76 -83.03 -0.64 -0.43 16 23 N -0.35 -3.93 12.29 31.88 0.39 -3.54 16 24 O 0.38 4.16 11.67 26.94 0.31 4.48 16 25 N -0.34 -4.09 12.29 31.88 0.39 -3.70 16 26 C 0.02 0.20 7.76 -83.02 -0.64 -0.45 16 27 C -0.05 -0.51 9.65 -39.54 -0.38 -0.90 16 28 H 0.03 0.68 6.66 -51.92 -0.35 0.34 16 29 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 30 H 0.01 0.19 6.14 -51.93 -0.32 -0.13 16 31 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.13 6.43 -51.93 -0.33 0.79 16 34 H 0.05 0.66 7.79 -51.93 -0.40 0.25 16 35 H 0.41 4.12 8.64 -34.47 -0.30 3.83 16 36 H 0.09 0.97 6.07 -51.93 -0.31 0.66 16 37 H 0.10 1.19 7.66 -51.93 -0.40 0.79 16 38 H 0.15 0.82 8.06 -52.48 -0.42 0.39 16 39 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -31.57 348.80 -8.04 -39.61 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.32 Total: 1.48 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -2.69 Total: -9.64 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: 0.98 Total: -63.16 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -1.59 Total: -37.48 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 49.17 SS G_CDS: -0.65 Total: 48.52 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.57 -8.04 -39.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364076531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.027 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds