Wall clock time and date at job start Sat Apr 11 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42103 * 110.54332 * 2 1 4 4 O 1.42106 * 110.54523 * 223.25472 * 2 1 3 5 5 C 1.76195 * 104.45090 * 111.62616 * 2 1 3 6 6 C 1.39869 * 126.04065 * 269.99920 * 5 2 1 7 7 N 1.30838 * 108.20133 * 179.73936 * 6 5 2 8 8 N 1.40083 * 108.20591 * 0.40710 * 7 6 5 9 9 C 1.46497 * 126.03597 * 179.85618 * 8 7 6 10 10 C 1.50700 * 109.47128 * 304.68589 * 9 8 7 11 11 O 1.21279 * 120.00113 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99961 * 180.02562 * 10 9 8 13 13 C 1.46494 * 119.99635 * 180.02562 * 12 10 9 14 14 C 1.50694 * 109.47248 * 90.00174 * 13 12 10 15 15 H 1.07999 * 119.99904 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00385 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00419 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99411 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47279 * 90.00270 * 18 16 14 20 20 H 1.48505 * 109.46775 * 209.99777 * 18 16 14 21 21 H 1.48495 * 109.47628 * 329.99523 * 18 16 14 22 22 C 1.46493 * 119.99864 * 359.72839 * 12 10 9 23 23 C 1.53000 * 109.47637 * 90.00039 * 22 12 10 24 24 C 1.47197 * 109.47449 * 179.97438 * 23 22 12 25 25 N 9.81891 * 97.31246 * 150.59069 * 2 1 3 26 26 C 1.34943 * 107.92475 * 359.58664 * 8 7 6 27 27 H 1.08998 * 109.47134 * 308.37767 * 1 2 3 28 28 H 1.09000 * 109.47166 * 68.37321 * 1 2 3 29 29 H 1.08996 * 109.46983 * 188.37292 * 1 2 3 30 30 H 1.07997 * 125.89826 * 359.97438 * 6 5 2 31 31 H 1.09004 * 109.47268 * 184.68729 * 9 8 7 32 32 H 1.08997 * 109.47471 * 64.69136 * 9 8 7 33 33 H 1.09003 * 109.47006 * 210.00121 * 13 12 10 34 34 H 1.09004 * 109.47665 * 329.99813 * 13 12 10 35 35 H 0.96993 * 119.99970 * 180.02562 * 17 16 14 36 36 H 1.09002 * 109.47192 * 209.99937 * 22 12 10 37 37 H 1.08996 * 109.47342 * 329.99648 * 22 12 10 38 38 H 1.09002 * 109.46747 * 300.00171 * 23 22 12 39 39 H 1.08996 * 109.47074 * 59.99445 * 23 22 12 40 40 H 1.08004 * 126.12840 * 180.21866 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9691 -0.9118 5 6 2.2537 -0.6288 1.5861 6 6 2.4590 0.1289 2.7437 7 7 2.7644 -0.6888 3.7185 8 7 2.7721 -1.9936 3.2090 9 6 3.0686 -3.2125 3.9657 10 6 4.4161 -3.0780 4.6268 11 8 5.0647 -2.0637 4.4808 12 7 4.9005 -4.0850 5.3805 13 6 6.2102 -3.9540 6.0237 14 6 6.0391 -3.3478 7.3927 15 1 5.0535 -3.0860 7.7480 16 6 7.1410 -3.1275 8.1917 17 7 6.9918 -2.5981 9.3863 18 14 8.8459 -3.5798 7.5768 19 1 9.4396 -2.4194 6.8654 20 1 9.7068 -3.9466 8.7300 21 1 8.7470 -4.7330 6.6465 22 6 4.1144 -5.3078 5.5618 23 6 4.4641 -6.3075 4.4575 24 6 3.6747 -7.5364 4.6401 25 7 3.0637 -8.4840 4.7823 26 6 2.4523 -1.9301 1.8995 27 1 -0.3633 0.6380 0.8056 28 1 -0.3633 0.3788 -0.9553 29 1 -0.3633 -1.0167 0.1496 30 1 2.3759 1.2029 2.8206 31 1 3.0797 -4.0668 3.2887 32 1 2.3035 -3.3626 4.7273 33 1 6.6693 -4.9382 6.1168 34 1 6.8494 -3.3108 5.4188 35 1 7.7670 -2.4428 9.9482 36 1 4.3424 -5.7456 6.5336 37 1 3.0524 -5.0679 5.5116 38 1 4.2361 -5.8697 3.4857 39 1 5.5261 -6.5474 4.5077 40 1 2.3701 -2.7678 1.2228 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364311973.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:26 Heat of formation + Delta-G solvation = 18.991833 kcal Electronic energy + Delta-G solvation = -26720.457450 eV Core-core repulsion = 22665.865078 eV Total energy + Delta-G solvation = -4054.592372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.47648 -39.49333 -37.15222 -37.09270 -36.01656 -35.56905 -33.68314 -32.79263 -31.21783 -30.65474 -29.74758 -28.98517 -27.07604 -24.29799 -22.93097 -22.06999 -21.34371 -19.30651 -18.70724 -18.04198 -17.87466 -17.10116 -16.91790 -16.45144 -16.12461 -15.78184 -15.62723 -15.32849 -14.84684 -14.55765 -14.46251 -13.97805 -13.88902 -13.56604 -13.50504 -13.27013 -13.17842 -12.73759 -12.70181 -12.63882 -12.40283 -12.21416 -12.10642 -11.99283 -11.73486 -11.73054 -11.23921 -11.20735 -11.06134 -10.66026 -10.57113 -10.32199 -9.99983 -9.67490 -9.46668 -9.13549 -8.69856 -8.13612 -6.19167 -4.20015 -0.01971 1.41166 2.12323 2.33516 2.50667 2.60316 2.84003 2.90305 3.19809 3.24109 3.27970 3.33660 3.81702 3.84059 3.93007 4.28911 4.29467 4.38096 4.50218 4.50718 4.63151 4.70978 4.84138 4.87012 4.92153 5.12357 5.15498 5.32728 5.34301 5.40355 5.52999 5.80812 6.30766 6.36890 6.57274 6.72119 6.96850 7.36745 7.40690 7.45139 7.78845 8.30356 8.53931 8.83624 9.39230 10.93949 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011463 B = 0.003068 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.052613 B = 9123.660622 C =10808.921829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.541 3.459 3 O -0.940 6.940 4 O -0.948 6.948 5 C -0.802 4.802 6 C 0.118 3.882 7 N -0.249 5.249 8 N -0.341 5.341 9 C 0.099 3.901 10 C 0.497 3.503 11 O -0.497 6.497 12 N -0.588 5.588 13 C 0.217 3.783 14 C -0.536 4.536 15 H 0.076 0.924 16 C 0.075 3.925 17 N -0.893 5.893 18 Si 0.875 3.125 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.265 1.265 22 C 0.112 3.888 23 C -0.051 4.051 24 C 0.213 3.787 25 N -0.437 5.437 26 C 0.170 3.830 27 H 0.130 0.870 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.197 0.803 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.035 0.965 34 H 0.040 0.960 35 H 0.266 0.734 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.259 -1.723 -17.866 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.717 3.283 3 O -0.937 6.937 4 O -0.945 6.945 5 C -0.901 4.901 6 C -0.073 4.073 7 N -0.066 5.066 8 N -0.117 5.117 9 C -0.026 4.026 10 C 0.280 3.720 11 O -0.370 6.370 12 N -0.321 5.321 13 C 0.097 3.903 14 C -0.574 4.574 15 H 0.094 0.906 16 C -0.128 4.128 17 N -0.530 5.530 18 Si 0.702 3.298 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.190 1.190 22 C -0.014 4.014 23 C -0.093 4.093 24 C -0.105 4.105 25 N -0.114 5.114 26 C 0.017 3.983 27 H 0.149 0.851 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.214 0.786 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.137 0.863 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -13.768 -2.522 -16.786 21.856 hybrid contribution 0.500 -0.162 -0.194 0.561 sum -13.267 -2.685 -16.980 21.715 Atomic orbital electron populations 1.30267 1.26789 1.11712 1.11433 1.03928 0.77025 0.74249 0.73053 1.93568 1.77214 1.36732 1.86207 1.93556 1.77433 1.62132 1.61383 1.31086 1.34138 1.01506 1.23357 1.23608 0.95289 1.00153 0.88238 1.77751 1.20418 0.86244 1.22205 1.48720 1.49442 1.06681 1.06879 1.21943 0.99041 0.83657 0.97978 1.20070 0.86940 0.84403 0.80572 1.90812 1.58576 1.27549 1.60079 1.47869 1.21362 1.14136 1.48740 1.19770 0.79058 0.97533 0.93904 1.21259 0.96042 1.42174 0.97925 0.90607 1.24851 0.98948 0.94365 0.94664 1.69880 1.30759 1.43145 1.09255 0.86878 0.84705 0.79494 0.78726 1.19854 1.21005 1.19003 1.21423 0.95859 0.85126 0.99010 1.19885 1.00028 0.87216 1.02124 1.29004 0.93683 0.94496 0.93359 1.81267 1.10114 1.11584 1.08447 1.22458 0.92292 0.97761 0.85839 0.85082 0.85493 0.85356 0.78629 0.85731 0.86144 0.94667 0.94211 0.92389 0.87882 0.90369 0.87652 0.86345 0.79152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.40 10.80 101.05 1.09 -1.31 16 2 S 2.54 20.71 5.94 -107.50 -0.64 20.07 16 3 O -0.94 -11.20 17.74 -57.54 -1.02 -12.22 16 4 O -0.95 -10.45 17.72 -57.54 -1.02 -11.47 16 5 C -0.80 -8.29 5.83 -40.01 -0.23 -8.52 16 6 C 0.12 1.50 11.74 -17.37 -0.20 1.29 16 7 N -0.25 -3.97 11.66 30.62 0.36 -3.61 16 8 N -0.34 -4.37 3.39 -62.55 -0.21 -4.58 16 9 C 0.10 1.05 5.55 -5.20 -0.03 1.02 16 10 C 0.50 8.23 7.70 -10.98 -0.08 8.15 16 11 O -0.50 -11.13 15.30 5.56 0.09 -11.05 16 12 N -0.59 -9.38 2.46 -175.07 -0.43 -9.81 16 13 C 0.22 4.55 4.23 -5.20 -0.02 4.53 16 14 C -0.54 -14.13 9.94 -34.44 -0.34 -14.47 16 15 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 18 Si 0.88 20.32 27.47 -169.99 -4.67 15.65 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.27 -5.61 6.54 56.52 0.37 -5.24 16 22 C 0.11 1.18 5.17 -4.05 -0.02 1.16 16 23 C -0.05 -0.38 6.03 -29.52 -0.18 -0.56 16 24 C 0.21 2.04 15.43 -20.75 -0.32 1.72 16 25 N -0.44 -5.52 18.54 42.17 0.78 -4.73 16 26 C 0.17 1.67 11.12 -17.22 -0.19 1.48 16 27 H 0.13 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.13 0.30 8.14 -51.92 -0.42 -0.13 16 29 H 0.13 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.20 1.97 8.06 -52.49 -0.42 1.54 16 31 H 0.12 0.67 7.10 -51.93 -0.37 0.30 16 32 H 0.12 1.05 7.39 -51.93 -0.38 0.67 16 33 H 0.04 0.68 7.13 -51.93 -0.37 0.31 16 34 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.10 1.22 8.07 -51.93 -0.42 0.81 16 37 H 0.08 0.61 6.44 -51.93 -0.33 0.28 16 38 H 0.11 0.49 7.20 -51.93 -0.37 0.12 16 39 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.19 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -43.02 369.17 -5.79 -48.81 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -4.73 Total: -3.36 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -0.63 Total: -3.55 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 1.27 Total: -48.46 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -1.96 Total: -34.73 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.67 Total: 15.65 kcal Atomic # 16 Polarization: 20.71 SS G_CDS: -0.64 Total: 20.07 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -43.02 -5.79 -48.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364311973.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.802 kcal (2) G-P(sol) polarization free energy of solvation -43.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds