Wall clock time and date at job start Sat Apr 11 2020 05:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42902 * 113.99607 * 2 1 4 4 C 1.53006 * 109.46767 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46928 * 64.99956 * 4 3 2 6 6 C 1.46495 * 120.00330 * 275.00299 * 5 4 3 7 7 C 1.50707 * 109.46976 * 274.99877 * 6 5 4 8 8 H 1.07998 * 119.99720 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00158 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00546 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99923 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47371 * 89.99952 * 11 9 7 13 13 H 1.48501 * 109.47134 * 209.99689 * 11 9 7 14 14 H 1.48503 * 109.47349 * 329.99849 * 11 9 7 15 15 S 1.65602 * 119.99660 * 95.00131 * 5 4 3 16 16 O 1.42093 * 106.40243 * 156.45953 * 15 5 4 17 17 O 1.42101 * 106.40213 * 23.54083 * 15 5 4 18 18 C 1.76203 * 107.21690 * 270.00065 * 15 5 4 19 19 C 1.35872 * 126.75297 * 114.98035 * 18 15 5 20 20 N 1.33492 * 110.87159 * 180.02562 * 19 18 15 21 21 C 1.31618 * 110.87794 * 359.97438 * 20 19 18 22 22 N 1.37389 * 135.89198 * 180.02562 * 21 20 19 23 23 H 0.96994 * 120.32266 * 359.97438 * 22 21 20 24 24 C 1.34072 * 119.35689 * 179.97438 * 22 21 20 25 25 N 1.30947 * 123.16556 * 359.97438 * 24 22 21 26 26 C 1.32824 * 122.75537 * 0.02562 * 25 24 22 27 27 C 1.38875 * 119.03354 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47138 * 59.99438 * 1 2 3 29 29 H 1.08998 * 109.46896 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46997 * 299.99713 * 1 2 3 31 31 H 1.08998 * 109.46645 * 60.00697 * 3 2 1 32 32 H 1.08995 * 109.47596 * 300.00433 * 3 2 1 33 33 H 1.09002 * 109.46881 * 305.00583 * 4 3 2 34 34 H 1.08998 * 109.47065 * 185.00647 * 4 3 2 35 35 H 1.08998 * 109.47325 * 34.99516 * 6 5 4 36 36 H 1.09002 * 109.47226 * 155.00266 * 6 5 4 37 37 H 0.97001 * 120.00611 * 180.02562 * 10 9 7 38 38 H 1.08006 * 124.56747 * 0.04630 * 19 18 15 39 39 H 1.08002 * 118.41835 * 179.97438 * 24 22 21 40 40 H 1.07999 * 120.47925 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.0003 -0.8949 -1.3783 7 6 5.2994 -1.4246 -0.8277 8 1 6.0330 -0.7423 -0.4243 9 6 5.5509 -2.7801 -0.8381 10 7 6.6842 -3.2424 -0.3572 11 14 4.2817 -3.9602 -1.5353 12 1 4.5309 -4.1546 -2.9863 13 1 4.3836 -5.2664 -0.8363 14 1 2.9216 -3.3978 -1.3376 15 16 4.4454 1.5131 -2.5263 16 8 5.3005 0.7117 -3.3297 17 8 4.8427 2.7601 -1.9727 18 6 3.0090 1.8339 -3.4952 19 6 2.4182 3.0405 -3.6983 20 7 1.3471 2.9190 -4.4857 21 6 1.1672 1.6650 -4.8427 22 7 0.2613 0.9795 -5.6154 23 1 -0.4669 1.4503 -6.0501 24 6 0.3936 -0.3465 -5.7629 25 7 1.3547 -1.0372 -5.2026 26 6 2.2859 -0.4817 -4.4356 27 6 2.2468 0.8886 -4.2134 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8465 -0.8899 33 1 3.8515 0.5682 0.8409 34 1 3.9786 2.1765 0.0890 35 1 3.1678 -1.3218 -0.8191 36 1 3.9118 -1.1708 -2.4291 37 1 6.8613 -4.1961 -0.3648 38 1 2.7681 3.9725 -3.2794 39 1 -0.3273 -0.8702 -6.3733 40 1 3.0627 -1.0868 -3.9918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364765755.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:29 Heat of formation + Delta-G solvation = -4.196046 kcal Electronic energy + Delta-G solvation = -29053.559284 eV Core-core repulsion = 24997.961410 eV Total energy + Delta-G solvation = -4055.597874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.05857 -38.91920 -37.86632 -36.52204 -35.51835 -35.29930 -35.06606 -32.40104 -30.70560 -29.80874 -29.44192 -27.17348 -25.83205 -25.13667 -23.71383 -22.63925 -21.75528 -21.36908 -19.14104 -18.51738 -17.72754 -17.35383 -17.04804 -16.70002 -16.13940 -15.95077 -15.74920 -15.58889 -15.18239 -14.86434 -14.62429 -14.11477 -13.69602 -13.44137 -13.25017 -13.22501 -12.51657 -12.31868 -12.25920 -12.06185 -11.96480 -11.72193 -11.39224 -11.25829 -11.14120 -10.88974 -10.81818 -10.60774 -10.51315 -10.28452 -10.13886 -9.80573 -9.45361 -9.44320 -8.89954 -8.49997 -8.44098 -7.99775 -5.98603 -3.96326 -0.27607 0.98434 1.19893 1.82355 2.80831 3.23881 3.34259 3.41140 3.42340 3.56419 3.71272 3.95113 4.03991 4.25888 4.44541 4.47736 4.61106 4.72867 4.96285 5.21080 5.27318 5.33891 5.36591 5.44372 5.49981 5.54638 5.60733 5.70613 5.78235 5.84490 6.07572 6.30002 6.35168 6.50783 6.65809 6.92530 7.24419 7.29947 7.40013 7.50477 7.57900 7.70192 8.59190 9.07019 9.61186 11.15020 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010353 B = 0.005886 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.807151 B = 4755.606893 C = 5220.341114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.041 3.959 4 C 0.124 3.876 5 N -0.972 5.972 6 C 0.230 3.770 7 C -0.526 4.526 8 H 0.079 0.921 9 C 0.074 3.926 10 N -0.897 5.897 11 Si 0.862 3.138 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.260 1.260 15 S 2.706 3.294 16 O -0.945 6.945 17 O -0.977 6.977 18 C -0.759 4.759 19 C 0.182 3.818 20 N -0.529 5.529 21 C 0.280 3.720 22 N -0.526 5.526 23 H 0.427 0.573 24 C 0.348 3.652 25 N -0.516 5.516 26 C 0.217 3.783 27 C -0.133 4.133 28 H 0.029 0.971 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.017 0.983 37 H 0.263 0.737 38 H 0.181 0.819 39 H 0.221 0.779 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.047 8.029 -8.327 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.038 4.038 4 C -0.003 4.003 5 N -0.809 5.809 6 C 0.107 3.893 7 C -0.565 4.565 8 H 0.097 0.903 9 C -0.128 4.128 10 N -0.536 5.536 11 Si 0.689 3.311 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.184 1.184 15 S 2.794 3.206 16 O -0.935 6.935 17 O -0.968 6.968 18 C -0.850 4.850 19 C 0.033 3.967 20 N -0.250 5.250 21 C 0.030 3.970 22 N -0.130 5.130 23 H 0.266 0.734 24 C 0.066 3.934 25 N -0.233 5.233 26 C 0.066 3.934 27 C -0.143 4.143 28 H 0.048 0.952 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.070 0.930 36 H 0.034 0.966 37 H 0.073 0.927 38 H 0.198 0.802 39 H 0.237 0.763 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -18.505 7.946 -8.835 21.991 hybrid contribution -1.489 -0.164 -0.410 1.553 sum -19.994 7.782 -9.244 23.362 Atomic orbital electron populations 1.22666 0.82625 1.02167 0.99033 1.88081 1.18182 1.27393 1.95146 1.23209 0.95840 0.85038 0.99700 1.21322 0.90442 0.99692 0.88799 1.57110 1.82105 1.17667 1.24059 1.19539 0.99108 0.74457 0.96203 1.21393 1.01649 0.93030 1.40427 0.90319 1.24819 0.95157 0.97982 0.94847 1.69891 1.23548 1.13876 1.46240 0.87056 0.82990 0.81155 0.79944 1.19731 1.21068 1.18415 1.01466 0.73313 0.72781 0.73041 1.93595 1.61915 1.68939 1.69002 1.93479 1.80961 1.43946 1.78403 1.31977 1.27661 1.00295 1.25092 1.22382 0.87790 0.96544 0.90000 1.69573 1.21172 1.15067 1.19211 1.20826 0.89799 0.92581 0.93803 1.42115 1.24584 1.08589 1.37682 0.73397 1.25135 0.95814 0.78623 0.93828 1.68079 1.04851 1.36462 1.13905 1.23359 0.92422 0.91486 0.86168 1.20291 0.97612 0.93811 1.02624 0.95202 0.90074 0.94500 0.92786 0.93873 0.88182 0.88290 0.92974 0.96560 0.92665 0.80211 0.76328 0.79782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.13 9.02 -35.23 -0.32 -6.44 16 3 C 0.04 0.61 6.28 37.16 0.23 0.84 16 4 C 0.12 2.15 6.13 -4.04 -0.02 2.13 16 5 N -0.97 -20.06 2.75 -115.66 -0.32 -20.37 16 6 C 0.23 5.42 4.01 -5.19 -0.02 5.40 16 7 C -0.53 -14.93 9.94 -34.44 -0.34 -15.27 16 8 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 9 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 10 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 11 Si 0.86 21.05 27.47 -169.99 -4.67 16.38 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 15 S 2.71 55.55 5.81 -107.50 -0.62 54.92 16 16 O -0.94 -22.82 16.99 -57.17 -0.97 -23.79 16 17 O -0.98 -20.26 16.33 -57.17 -0.93 -21.19 16 18 C -0.76 -13.25 6.27 -39.35 -0.25 -13.50 16 19 C 0.18 2.86 11.38 -17.68 -0.20 2.66 16 20 N -0.53 -7.88 11.16 -11.01 -0.12 -8.00 16 21 C 0.28 3.74 8.71 -153.97 -1.34 2.39 16 22 N -0.53 -3.91 5.35 -12.03 -0.06 -3.98 16 23 H 0.43 1.36 8.93 -40.82 -0.36 1.00 16 24 C 0.35 2.34 12.26 -90.88 -1.11 1.23 16 25 N -0.52 -6.15 10.30 -14.07 -0.14 -6.30 16 26 C 0.22 3.38 11.34 -16.89 -0.19 3.19 16 27 C -0.13 -2.15 6.45 -104.98 -0.68 -2.83 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.10 1.80 8.11 -51.93 -0.42 1.38 16 34 H 0.10 1.55 6.91 -51.93 -0.36 1.19 16 35 H 0.05 1.22 5.66 -51.93 -0.29 0.93 16 36 H 0.02 0.39 4.69 -51.93 -0.24 0.14 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.18 2.40 8.06 -52.48 -0.42 1.98 16 39 H 0.22 0.11 8.06 -52.49 -0.42 -0.32 16 40 H 0.19 3.18 5.73 -52.49 -0.30 2.88 16 LS Contribution 352.35 15.07 5.31 5.31 Total: -1.00 -39.90 352.35 -9.53 -49.43 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -4.53 Total: 1.12 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -2.91 Total: -10.19 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: 0.12 Total: -65.55 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -2.22 Total: -51.43 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Atomic # 16 Polarization: 55.55 SS G_CDS: -0.62 Total: 54.92 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -39.90 -9.53 -49.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364765755.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.235 kcal (2) G-P(sol) polarization free energy of solvation -39.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds