Wall clock time and date at job start Sat Apr 11 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81399 * 107.16597 * 2 1 4 4 O 1.42097 * 113.54005 * 233.80352 * 2 1 3 5 5 N 1.49356 * 107.52481 * 115.33764 * 2 1 3 6 6 C 1.32414 * 120.00020 * 180.02562 * 5 2 1 7 7 O 1.21543 * 120.00027 * 359.97438 * 6 5 2 8 8 C 1.50698 * 119.99910 * 180.02562 * 6 5 2 9 9 N 1.46503 * 109.47100 * 179.97438 * 8 6 5 10 10 C 1.34777 * 119.99813 * 180.02562 * 9 8 6 11 11 O 1.21573 * 120.00029 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00018 * 180.02562 * 10 9 8 13 13 C 1.39248 * 120.00407 * 185.78800 * 12 10 9 14 14 C 1.39681 * 119.56995 * 18.76828 * 13 12 10 15 15 C 1.38646 * 119.49286 * 180.02562 * 14 13 12 16 16 C 1.38360 * 118.67159 * 359.72559 * 15 14 13 17 17 C 1.40567 * 119.12760 * 0.53544 * 16 15 14 18 18 C 1.41335 * 119.78665 * 179.72895 * 17 16 15 19 19 H 1.07996 * 120.00106 * 8.66320 * 18 17 16 20 20 C 1.40026 * 119.99948 * 188.65820 * 18 17 16 21 21 N 1.30747 * 119.99730 * 195.96810 * 20 18 17 22 22 Si 1.86798 * 120.00021 * 15.96594 * 20 18 17 23 23 H 1.48500 * 109.47276 * 269.99741 * 22 20 18 24 24 H 1.48497 * 109.47183 * 29.99785 * 22 20 18 25 25 H 1.48501 * 109.47159 * 150.00195 * 22 20 18 26 26 N 1.31895 * 119.57654 * 198.78688 * 13 12 10 27 27 H 1.09009 * 109.47289 * 304.65671 * 1 2 3 28 28 H 1.09003 * 109.47615 * 64.65707 * 1 2 3 29 29 H 1.08999 * 109.47004 * 184.66405 * 1 2 3 30 30 H 1.09005 * 109.47565 * 173.80205 * 3 2 1 31 31 H 1.09005 * 109.47406 * 293.80152 * 3 2 1 32 32 H 1.09001 * 109.47221 * 53.80064 * 3 2 1 33 33 H 1.09004 * 109.47380 * 59.99878 * 8 6 5 34 34 H 1.09001 * 109.46901 * 300.00103 * 8 6 5 35 35 H 0.96991 * 119.99936 * 0.02562 * 9 8 6 36 36 H 0.96999 * 119.99891 * 5.78185 * 12 10 9 37 37 H 1.08004 * 120.25636 * 359.97438 * 14 13 12 38 38 H 1.08001 * 120.66691 * 179.97438 * 15 14 13 39 39 H 1.08002 * 120.43493 * 180.26318 * 16 15 14 40 40 H 0.96992 * 120.00510 * 354.92349 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.3494 1.7332 0.0000 4 8 2.3815 -0.7693 -1.0513 5 7 2.2637 -0.6095 1.2872 6 6 3.5566 -0.7315 1.5460 7 8 4.3773 -0.3478 0.7358 8 6 4.0103 -1.3470 2.8445 9 7 5.4745 -1.3682 2.8896 10 6 6.1083 -1.8781 3.9642 11 8 5.4650 -2.3200 4.8963 12 7 7.4553 -1.8971 4.0059 13 6 8.1104 -2.5312 5.0584 14 6 7.4213 -3.4631 5.8379 15 6 8.0750 -4.0930 6.8858 16 6 9.4015 -3.7804 7.1245 17 6 10.0381 -2.8298 6.3078 18 6 11.3912 -2.4957 6.5429 19 1 11.9728 -3.0658 7.2520 20 6 11.9775 -1.4254 5.8563 21 7 13.2788 -1.3029 5.8254 22 14 10.9005 -0.1727 4.9844 23 1 10.6602 -0.6138 3.5869 24 1 9.6026 -0.0550 5.6963 25 1 11.5824 1.1464 4.9767 26 7 9.3735 -2.2437 5.3066 27 1 -0.3634 0.5844 0.8454 28 1 -0.3634 0.4399 -0.9288 29 1 -0.3633 -1.0243 0.0836 30 1 3.4328 1.7789 0.1110 31 1 2.0603 2.2028 -0.9403 32 1 1.8767 2.2595 0.8293 33 1 3.6302 -2.3661 2.9160 34 1 3.6293 -0.7577 3.6786 35 1 5.9877 -1.0152 2.1461 36 1 7.9683 -1.4692 3.3027 37 1 6.3869 -3.6906 5.6266 38 1 7.5604 -4.8163 7.5009 39 1 9.9395 -4.2571 7.9306 40 1 13.8354 -1.9095 6.3382 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365263925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:34 Heat of formation + Delta-G solvation = -12.821829 kcal Electronic energy + Delta-G solvation = -26402.115983 eV Core-core repulsion = 22346.144067 eV Total energy + Delta-G solvation = -4055.971916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.48924 -39.76485 -38.13605 -36.92455 -34.68819 -34.25164 -33.74759 -33.36381 -30.95928 -30.78023 -29.88399 -29.60610 -27.71040 -25.19758 -22.71524 -21.67186 -21.32617 -20.26026 -18.90307 -18.46223 -17.90491 -17.27295 -17.07228 -16.77423 -16.47514 -15.72427 -15.16817 -15.02369 -14.83817 -14.71810 -14.35411 -14.18769 -14.04697 -14.00138 -13.73201 -13.65065 -13.38341 -13.01631 -12.71613 -12.58125 -12.31479 -12.13638 -11.77173 -11.75849 -11.11756 -10.78961 -10.49882 -10.29373 -10.22355 -10.16745 -9.88887 -9.67918 -9.31569 -9.01241 -8.94377 -8.40484 -7.80392 -7.26990 -7.17440 -4.65879 -1.31141 1.65273 2.15413 2.41985 2.52155 2.78798 2.92301 3.34109 3.51447 3.56106 3.72556 3.81395 3.96252 3.98174 4.11721 4.25554 4.42257 4.47415 4.55619 4.70354 4.70660 5.10554 5.45188 5.51810 5.65048 5.94586 6.00618 6.21495 6.41517 6.54153 6.65175 6.78839 7.05106 7.29008 7.45585 7.53509 7.60879 7.73958 7.88054 8.04139 8.32029 8.43980 8.73921 8.86955 9.55781 10.06474 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.002367 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.159273 B =11825.438197 C =12836.288406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.534 4.534 2 S 2.298 3.702 3 C -0.625 4.625 4 O -0.921 6.921 5 N -1.123 6.123 6 C 0.549 3.451 7 O -0.571 6.571 8 C 0.150 3.850 9 N -0.742 5.742 10 C 0.714 3.286 11 O -0.565 6.565 12 N -0.666 5.666 13 C 0.402 3.598 14 C -0.309 4.309 15 C -0.036 4.036 16 C -0.282 4.282 17 C 0.276 3.724 18 C -0.483 4.483 19 H 0.083 0.917 20 C 0.050 3.950 21 N -0.807 5.807 22 Si 1.143 2.857 23 H -0.288 1.288 24 H -0.279 1.279 25 H -0.328 1.328 26 N -0.597 5.597 27 H 0.147 0.853 28 H 0.140 0.860 29 H 0.151 0.849 30 H 0.145 0.855 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.406 0.594 36 H 0.404 0.596 37 H 0.142 0.858 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.454 8.087 -13.510 32.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.692 4.692 2 S 2.495 3.505 3 C -0.780 4.780 4 O -0.907 6.907 5 N -1.032 6.032 6 C 0.335 3.665 7 O -0.451 6.451 8 C 0.020 3.980 9 N -0.402 5.402 10 C 0.413 3.587 11 O -0.442 6.442 12 N -0.313 5.313 13 C 0.170 3.830 14 C -0.334 4.334 15 C -0.060 4.060 16 C -0.304 4.304 17 C 0.152 3.848 18 C -0.516 4.516 19 H 0.101 0.899 20 C -0.172 4.172 21 N -0.429 5.429 22 Si 0.976 3.024 23 H -0.215 1.215 24 H -0.207 1.207 25 H -0.261 1.261 26 N -0.322 5.322 27 H 0.166 0.834 28 H 0.158 0.842 29 H 0.169 0.831 30 H 0.164 0.836 31 H 0.145 0.855 32 H 0.152 0.848 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.243 0.757 36 H 0.239 0.761 37 H 0.159 0.841 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -28.028 9.023 -14.768 32.940 hybrid contribution 0.284 -1.099 0.769 1.372 sum -27.744 7.924 -13.998 32.069 Atomic orbital electron populations 1.28988 1.13587 1.14112 1.12537 1.12643 0.81691 0.79993 0.76192 1.30076 1.14705 1.22018 1.11215 1.93587 1.72905 1.63221 1.60977 1.70440 1.29623 1.57298 1.45860 1.19756 0.82183 0.76187 0.88343 1.90868 1.56199 1.50311 1.47758 1.20543 0.79735 1.03181 0.94579 1.44883 1.06504 1.67626 1.21141 1.15558 0.81425 0.79094 0.82594 1.90845 1.65434 1.51702 1.36174 1.42286 1.04832 1.57847 1.26333 1.17783 0.89085 0.89327 0.86846 1.21557 1.02791 1.05735 1.03288 1.20913 0.93908 0.96060 0.95154 1.21585 0.95664 1.07848 1.05310 1.18171 0.92361 0.88214 0.86049 1.20627 0.94545 1.13959 1.22428 0.89887 1.27637 0.96704 0.98890 0.93962 1.70616 1.05343 1.37205 1.29721 0.82140 0.72847 0.70734 0.76682 1.21492 1.20668 1.26077 1.66127 1.08332 1.32891 1.24827 0.83434 0.84205 0.83098 0.83648 0.85520 0.84806 0.87959 0.87825 0.75682 0.76072 0.84106 0.87718 0.87811 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.53 0.80 10.89 101.05 1.10 1.90 16 2 S 2.30 10.84 4.53 -107.50 -0.49 10.35 16 3 C -0.63 -1.59 10.55 101.05 1.07 -0.52 16 4 O -0.92 -10.15 17.28 -51.79 -0.89 -11.04 16 5 N -1.12 -9.61 10.20 30.50 0.31 -9.30 16 6 C 0.55 6.74 7.44 -12.03 -0.09 6.65 16 7 O -0.57 -8.26 13.67 -11.23 -0.15 -8.42 16 8 C 0.15 1.93 6.23 -5.19 -0.03 1.89 16 9 N -0.74 -11.14 5.53 -66.42 -0.37 -11.51 16 10 C 0.71 13.45 8.40 -86.92 -0.73 12.72 16 11 O -0.57 -12.04 13.14 5.30 0.07 -11.97 16 12 N -0.67 -13.58 5.42 -15.79 -0.09 -13.67 16 13 C 0.40 9.80 7.51 -155.00 -1.16 8.63 16 14 C -0.31 -7.37 8.83 -38.89 -0.34 -7.71 16 15 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 16 C -0.28 -7.02 9.83 -38.66 -0.38 -7.40 16 17 C 0.28 7.56 6.27 -85.00 -0.53 7.02 16 18 C -0.48 -13.59 9.51 -37.73 -0.36 -13.95 16 19 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 20 C 0.05 1.39 5.51 -17.34 -0.10 1.29 16 21 N -0.81 -22.48 13.65 55.55 0.76 -21.72 16 22 Si 1.14 28.68 25.93 -169.99 -4.41 24.28 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 24 H -0.28 -7.20 6.55 56.52 0.37 -6.83 16 25 H -0.33 -8.06 7.11 56.52 0.40 -7.66 16 26 N -0.60 -15.84 5.07 -10.26 -0.05 -15.89 16 27 H 0.15 -0.57 8.14 -51.92 -0.42 -0.99 16 28 H 0.14 -0.59 8.14 -51.92 -0.42 -1.01 16 29 H 0.15 -0.21 8.14 -51.92 -0.42 -0.63 16 30 H 0.15 0.84 7.07 -51.92 -0.37 0.47 16 31 H 0.13 -0.02 8.14 -51.92 -0.42 -0.44 16 32 H 0.13 -0.02 8.14 -51.92 -0.42 -0.44 16 33 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.41 5.70 7.46 -40.82 -0.30 5.40 16 36 H 0.40 7.36 8.84 -40.82 -0.36 7.00 16 37 H 0.14 3.30 5.33 -52.50 -0.28 3.02 16 38 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 39 H 0.10 2.40 8.06 -52.49 -0.42 1.98 16 40 H 0.28 7.56 8.73 -40.82 -0.36 7.20 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -41.89 354.89 -6.64 -48.53 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.72 Total: 5.70 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -1.96 Total: 9.30 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: 0.56 Total: -72.09 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.98 Total: -31.43 kcal Atomic # 14 Polarization: 28.68 SS G_CDS: -4.41 Total: 24.28 kcal Atomic # 16 Polarization: 10.84 SS G_CDS: -0.49 Total: 10.35 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -41.89 -6.64 -48.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365263925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.712 kcal (2) G-P(sol) polarization free energy of solvation -41.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds