Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 117.00048 * 2 1 4 4 O 1.20822 * 119.99895 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00005 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.67877 * 302.02977 * 5 3 2 7 7 O 1.44471 * 110.65868 * 179.03798 * 5 3 2 8 8 C 1.43747 * 106.98847 * 201.45146 * 7 5 3 9 9 C 1.54103 * 107.29179 * 26.51360 * 8 7 5 10 10 C 1.54808 * 104.18898 * 357.97235 * 9 8 7 11 11 H 1.09004 * 110.90629 * 220.89269 * 10 9 8 12 12 N 1.46499 * 110.90856 * 97.31760 * 10 9 8 13 13 C 1.34777 * 119.99665 * 89.60793 * 12 10 9 14 14 O 1.21583 * 120.00270 * 359.72083 * 13 12 10 15 15 N 1.34775 * 119.99585 * 179.72218 * 13 12 10 16 16 C 1.46507 * 119.99876 * 179.97438 * 15 13 12 17 17 H 1.08995 * 109.46877 * 35.00407 * 16 15 13 18 18 C 1.50701 * 109.47122 * 155.00086 * 16 15 13 19 19 H 1.08007 * 119.99576 * 0.02562 * 18 16 15 20 20 C 1.37875 * 120.00190 * 179.97438 * 18 16 15 21 21 N 1.31518 * 119.99551 * 0.02562 * 20 18 16 22 22 Si 1.86793 * 119.99982 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47193 * 90.00300 * 22 20 18 24 24 H 1.48510 * 109.46948 * 209.99997 * 22 20 18 25 25 H 1.48500 * 109.47333 * 330.00182 * 22 20 18 26 26 C 1.52997 * 109.47408 * 275.00414 * 16 15 13 27 27 F 1.39903 * 109.47126 * 59.99321 * 26 16 15 28 28 F 1.39894 * 109.47202 * 180.02562 * 26 16 15 29 29 F 1.39903 * 109.47248 * 300.00047 * 26 16 15 30 30 H 1.08994 * 109.47337 * 300.00827 * 1 2 3 31 31 H 1.09004 * 109.46613 * 60.00248 * 1 2 3 32 32 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.87733 * 267.09167 * 8 7 5 34 34 H 1.08996 * 110.00631 * 146.00616 * 8 7 5 35 35 H 1.08998 * 110.48633 * 239.29517 * 9 8 7 36 36 H 1.09002 * 110.60411 * 116.70534 * 9 8 7 37 37 H 0.97001 * 119.99790 * 269.32506 * 12 10 9 38 38 H 0.97000 * 120.00523 * 0.02562 * 15 13 12 39 39 H 0.97001 * 119.99342 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9787 0.7551 0.8654 7 8 4.0046 2.6513 -0.0222 8 6 5.3519 2.6548 -0.5234 9 6 5.5124 1.4078 -1.4144 10 6 4.1440 0.6909 -1.3139 11 1 4.2752 -0.3884 -1.2353 12 7 3.2911 1.0297 -2.4558 13 6 3.3369 0.2821 -3.5763 14 8 4.0897 -0.6704 -3.6413 15 7 2.5482 0.5906 -4.6247 16 6 2.5983 -0.2217 -5.8429 17 1 2.7730 -1.2643 -5.5775 18 6 1.2889 -0.1036 -6.5796 19 1 0.4986 0.5150 -6.1805 20 6 1.1002 -0.7844 -7.7636 21 7 2.0627 -1.5373 -8.2498 22 14 -0.5225 -0.6374 -8.6771 23 1 -0.4529 0.4993 -9.6301 24 1 -0.7858 -1.8939 -9.4237 25 1 -1.6189 -0.4010 -7.7037 26 6 3.7345 0.2735 -6.7398 27 9 4.9501 0.1640 -6.0559 28 9 3.7820 -0.5017 -7.9033 29 9 3.5103 1.6118 -7.0805 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 6.0563 2.6101 0.3071 34 1 5.5287 3.5555 -1.1112 35 1 6.3078 0.7669 -1.0339 36 1 5.7169 1.6967 -2.4453 37 1 2.6905 1.7897 -2.4038 38 1 1.9479 1.3507 -4.5730 39 1 1.9301 -2.0159 -9.0830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365282282.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = -282.812115 kcal Electronic energy + Delta-G solvation = -31822.359115 eV Core-core repulsion = 26737.777179 eV Total energy + Delta-G solvation = -5084.581936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.112 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.33423 -45.98642 -45.60364 -41.12220 -39.70957 -38.76580 -36.55068 -34.94778 -34.12332 -32.61954 -31.04684 -30.31924 -28.16379 -27.41569 -24.57957 -23.99680 -22.31613 -21.41699 -20.85701 -20.28584 -18.65776 -18.08160 -17.21510 -17.00121 -16.87524 -16.63926 -16.48554 -16.31175 -16.08162 -15.40719 -15.05983 -14.92233 -14.74782 -14.22206 -14.00146 -13.54706 -13.31640 -13.23912 -12.91422 -12.71220 -12.52172 -12.38811 -12.28560 -12.20043 -11.97785 -11.91412 -11.81538 -11.70403 -11.48468 -11.16226 -10.94798 -10.89610 -10.81202 -10.61927 -10.41060 -10.08964 -9.68159 -9.62203 -8.97927 -8.73573 -8.22785 -6.24805 -4.48593 1.93191 2.16005 2.98306 3.18063 3.24685 3.27320 3.60952 3.70509 4.17512 4.25997 4.31735 4.53216 4.66779 4.69896 4.77324 4.87062 4.92585 4.96095 4.98218 5.08200 5.41251 5.43493 5.48194 5.68869 5.83707 5.88381 5.92122 6.13846 6.21592 6.34178 6.61771 6.78906 7.15239 7.31915 7.52583 7.59712 7.63837 8.47164 8.57995 9.08864 9.21190 10.66748 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014163 B = 0.003997 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.564432 B = 7003.157258 C = 8301.487685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.348 6.348 3 C 0.470 3.530 4 O -0.487 6.487 5 C 0.076 3.924 6 H 0.124 0.876 7 O -0.349 6.349 8 C 0.047 3.953 9 C -0.168 4.168 10 C 0.151 3.849 11 H 0.122 0.878 12 N -0.747 5.747 13 C 0.704 3.296 14 O -0.579 6.579 15 N -0.724 5.724 16 C 0.263 3.737 17 H 0.086 0.914 18 C -0.552 4.552 19 H 0.077 0.923 20 C 0.065 3.935 21 N -0.839 5.839 22 Si 0.915 3.085 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.271 1.271 26 C 0.416 3.584 27 F -0.217 7.217 28 F -0.137 7.137 29 F -0.210 7.210 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.395 0.605 38 H 0.395 0.605 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.107 4.076 15.401 16.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.265 6.265 3 C 0.311 3.689 4 O -0.373 6.373 5 C 0.016 3.984 6 H 0.141 0.859 7 O -0.268 6.268 8 C -0.030 4.030 9 C -0.208 4.208 10 C 0.044 3.956 11 H 0.139 0.861 12 N -0.404 5.404 13 C 0.404 3.596 14 O -0.456 6.456 15 N -0.377 5.377 16 C 0.157 3.843 17 H 0.104 0.896 18 C -0.589 4.589 19 H 0.095 0.905 20 C -0.144 4.144 21 N -0.472 5.472 22 Si 0.742 3.258 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.195 1.195 26 C 0.359 3.641 27 F -0.199 7.199 28 F -0.118 7.118 29 F -0.192 7.192 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.230 0.770 38 H 0.228 0.772 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.525 3.510 15.175 15.779 hybrid contribution -1.104 0.909 -0.733 1.607 sum 1.422 4.419 14.442 15.169 Atomic orbital electron populations 1.23338 0.75397 1.04163 1.02686 1.86489 1.23967 1.32222 1.83795 1.22933 0.90813 0.82023 0.73122 1.90708 1.66576 1.36229 1.43798 1.22918 0.88720 0.86348 1.00398 0.85885 1.89018 1.29804 1.21942 1.86011 1.23319 0.82998 0.99631 0.97032 1.23473 0.97724 0.96858 1.02704 1.22075 0.88928 1.01709 0.82895 0.86054 1.45081 1.46423 1.34390 1.14550 1.15974 0.81267 0.82445 0.79948 1.90920 1.42546 1.30087 1.82074 1.45285 1.43340 1.34547 1.14485 1.19620 0.92835 0.92792 0.79045 0.89644 1.20873 0.97722 1.32183 1.08105 0.90529 1.25071 0.97781 0.94716 0.96789 1.70407 1.30219 1.26261 1.20361 0.86210 0.82209 0.77828 0.79562 1.20224 1.20780 1.19523 1.23185 0.83297 0.74861 0.82740 1.93067 1.50433 1.95904 1.80484 1.93402 1.95854 1.73192 1.49376 1.92988 1.94845 1.37962 1.93418 0.91894 0.91414 0.87659 0.91490 0.88969 0.89024 0.88838 0.77043 0.77194 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.35 -4.20 10.57 -39.26 -0.41 -4.62 16 3 C 0.47 6.04 6.08 36.00 0.22 6.26 16 4 O -0.49 -7.50 16.32 -25.23 -0.41 -7.91 16 5 C 0.08 0.82 3.74 -26.83 -0.10 0.72 16 6 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 7 O -0.35 -4.14 10.81 -54.32 -0.59 -4.73 16 8 C 0.05 0.42 7.70 37.73 0.29 0.71 16 9 C -0.17 -1.75 6.75 -25.20 -0.17 -1.92 16 10 C 0.15 1.85 3.18 -65.92 -0.21 1.64 16 11 H 0.12 1.54 7.63 -51.93 -0.40 1.14 16 12 N -0.75 -11.19 4.58 -56.71 -0.26 -11.45 16 13 C 0.70 13.72 8.10 -86.92 -0.70 13.02 16 14 O -0.58 -13.25 14.60 5.29 0.08 -13.17 16 15 N -0.72 -14.82 4.99 -59.81 -0.30 -15.12 16 16 C 0.26 6.49 2.21 -69.08 -0.15 6.34 16 17 H 0.09 2.36 7.58 -51.93 -0.39 1.96 16 18 C -0.55 -13.96 8.47 -34.44 -0.29 -14.26 16 19 H 0.08 1.84 7.74 -52.48 -0.41 1.43 16 20 C 0.07 1.68 5.20 -17.82 -0.09 1.59 16 21 N -0.84 -22.82 9.50 55.43 0.53 -22.30 16 22 Si 0.92 19.97 29.54 -169.99 -5.02 14.95 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 C 0.42 10.62 2.81 37.16 0.10 10.73 16 27 F -0.22 -5.48 15.68 2.25 0.04 -5.44 16 28 F -0.14 -3.78 12.91 2.25 0.03 -3.75 16 29 F -0.21 -5.20 16.94 2.25 0.04 -5.16 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.17 8.06 -51.93 -0.42 0.75 16 37 H 0.40 5.62 7.98 -40.82 -0.33 5.29 16 38 H 0.39 7.15 8.55 -40.82 -0.35 6.80 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 345.35 15.07 5.20 5.20 Total: -1.00 -32.46 345.35 -5.50 -37.97 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -4.38 Total: 9.25 kcal Atomic # 6 Polarization: 26.30 SS G_CDS: -0.04 Total: 26.26 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.03 Total: -48.86 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.34 Total: -30.43 kcal Atomic # 9 Polarization: -14.46 SS G_CDS: 0.10 Total: -14.36 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.46 -5.50 -37.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365282282.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -244.843 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -282.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds