Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35993 * 117.00358 * 2 1 4 4 C 1.38687 * 119.99197 * 0.02562 * 3 2 1 5 5 C 1.38102 * 120.03062 * 180.02562 * 4 3 2 6 6 C 1.38849 * 120.00787 * 359.97438 * 5 4 3 7 7 N 1.40148 * 120.01147 * 180.02562 * 6 5 4 8 8 C 1.34773 * 119.99512 * 324.92011 * 7 6 5 9 9 O 1.21589 * 120.00812 * 4.62595 * 8 7 6 10 10 N 1.34782 * 119.99400 * 184.62526 * 8 7 6 11 11 C 1.47015 * 125.65211 * 359.69805 * 10 8 7 12 12 C 1.54333 * 107.26881 * 178.84977 * 11 10 8 13 13 C 1.55159 * 103.02029 * 338.13415 * 12 11 10 14 14 O 1.42896 * 111.00801 * 277.23846 * 13 12 11 15 15 C 1.50694 * 111.03756 * 153.39508 * 13 12 11 16 16 H 1.08004 * 120.00015 * 6.33561 * 15 13 12 17 17 C 1.37876 * 120.00153 * 186.33389 * 15 13 12 18 18 N 1.31519 * 120.00041 * 0.02562 * 17 15 13 19 19 Si 1.86795 * 120.00221 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47440 * 60.00220 * 19 17 15 21 21 H 1.48501 * 109.47580 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47353 * 300.00108 * 19 17 15 23 23 C 1.47430 * 125.64743 * 180.02562 * 10 8 7 24 24 C 1.38810 * 119.97659 * 0.02562 * 6 5 4 25 25 C 1.38211 * 119.97492 * 0.25284 * 24 6 5 26 26 Cl 1.73601 * 120.00375 * 179.72085 * 25 24 6 27 27 H 1.08998 * 109.46714 * 299.99969 * 1 2 3 28 28 H 1.08998 * 109.47095 * 59.99527 * 1 2 3 29 29 H 1.09002 * 109.47469 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.98414 * 0.02562 * 4 3 2 31 31 H 1.08004 * 120.00183 * 179.97438 * 5 4 3 32 32 H 0.97003 * 120.00044 * 144.93135 * 7 6 5 33 33 H 1.09005 * 109.88090 * 298.39293 * 11 10 8 34 34 H 1.09002 * 109.88740 * 59.55441 * 11 10 8 35 35 H 1.09006 * 110.84732 * 219.67386 * 12 11 10 36 36 H 1.08994 * 110.51680 * 96.44886 * 12 11 10 37 37 H 0.96700 * 114.00209 * 173.64536 * 14 13 12 38 38 H 0.96995 * 120.00038 * 179.97438 * 18 17 15 39 39 H 1.09001 * 110.36191 * 322.93376 * 23 10 8 40 40 H 1.08993 * 110.36613 * 85.13963 * 23 10 8 41 41 H 1.08007 * 120.01678 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2911 2.3747 0.0005 5 6 1.9173 3.6056 0.0000 6 6 3.3038 3.6793 -0.0005 7 7 3.9394 4.9284 -0.0005 8 6 3.3933 5.9622 -0.6709 9 8 2.3085 5.8355 -1.2052 10 7 4.0499 7.1367 -0.7491 11 6 5.3592 7.4282 -0.1473 12 6 5.7227 8.8805 -0.5223 13 6 4.8547 9.1442 -1.7811 14 8 5.4867 8.6314 -2.9556 15 6 4.5519 10.6127 -1.9314 16 1 5.0142 11.3300 -1.2694 17 6 3.6847 11.0407 -2.9141 18 7 3.1213 10.1672 -3.7200 19 14 3.3098 12.8611 -3.1010 20 1 4.5668 13.5987 -3.3859 21 1 2.3553 13.0576 -4.2215 22 1 2.7088 13.3744 -1.8437 23 6 3.5709 8.3441 -1.4464 24 6 4.0602 2.5154 -0.0011 25 6 3.4326 1.2840 -0.0064 26 17 4.3779 -0.1720 -0.0144 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.2125 2.3178 0.0014 31 1 1.3285 4.5111 0.0000 32 1 4.7723 5.0488 0.4818 33 1 5.2999 7.3268 0.9364 34 1 6.1102 6.7456 -0.5450 35 1 6.7830 8.9659 -0.7602 36 1 5.4509 9.5624 0.2834 37 1 4.9404 8.6853 -3.7517 38 1 2.5109 10.4683 -4.4111 39 1 3.0453 8.0703 -2.3613 40 1 2.9186 8.9250 -0.7945 41 1 5.1388 2.5720 -0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365481632.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -82.603394 kcal Electronic energy + Delta-G solvation = -27033.833038 eV Core-core repulsion = 22940.498709 eV Total energy + Delta-G solvation = -4093.334330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.69053 -39.74881 -38.10872 -37.10289 -36.41424 -34.42734 -33.99832 -32.27319 -31.00975 -30.40901 -29.09532 -27.86532 -27.15071 -25.11527 -23.31240 -22.80488 -21.93244 -19.76318 -19.66474 -18.48491 -18.01067 -17.16991 -17.09128 -16.31959 -15.97033 -15.40729 -15.22059 -14.84666 -14.64096 -14.44846 -14.15317 -14.12192 -13.72779 -13.28870 -13.10296 -12.92010 -12.81538 -12.25689 -12.23109 -11.75970 -11.69441 -11.61196 -11.48916 -11.26482 -11.05490 -10.96539 -10.89574 -10.68043 -10.53183 -10.26236 -9.93217 -9.62424 -9.42891 -8.96086 -8.73905 -8.44946 -8.00473 -7.65086 -6.31581 -4.41730 1.04421 1.17958 2.02403 2.84871 3.07802 3.19843 3.25930 3.27409 3.32041 3.71787 4.18302 4.26598 4.59413 4.74905 4.93986 4.95086 5.03282 5.10787 5.24394 5.27992 5.30416 5.50682 5.53443 5.54746 5.68169 5.92004 5.98093 6.11491 6.22322 6.29422 6.42908 6.63123 6.78756 6.79462 6.83147 7.12265 7.12787 7.24144 7.45143 7.69961 7.97645 8.28928 8.61789 8.86791 9.25335 9.33782 10.75402 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.022706 B = 0.002433 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.831210 B =11507.583322 C =12239.209648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.113 3.887 4 C -0.177 4.177 5 C -0.075 4.075 6 C 0.155 3.845 7 N -0.688 5.688 8 C 0.715 3.285 9 O -0.580 6.580 10 N -0.621 5.621 11 C 0.100 3.900 12 C -0.115 4.115 13 C 0.249 3.751 14 O -0.582 6.582 15 C -0.539 4.539 16 H 0.067 0.933 17 C 0.072 3.928 18 N -0.892 5.892 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.112 3.888 24 C -0.108 4.108 25 C -0.049 4.049 26 Cl -0.060 7.060 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.139 0.861 31 H 0.153 0.847 32 H 0.405 0.595 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.382 0.618 38 H 0.271 0.729 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.142 -16.295 9.663 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.066 3.934 4 C -0.196 4.196 5 C -0.096 4.096 6 C 0.059 3.941 7 N -0.336 5.336 8 C 0.418 3.582 9 O -0.458 6.458 10 N -0.357 5.357 11 C -0.023 4.023 12 C -0.153 4.153 13 C 0.208 3.792 14 O -0.391 6.391 15 C -0.577 4.577 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.530 5.530 19 Si 0.731 3.269 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.009 4.009 24 C -0.129 4.129 25 C -0.077 4.077 26 Cl -0.031 7.031 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.156 0.844 31 H 0.170 0.830 32 H 0.241 0.759 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.232 0.768 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.428 -16.794 9.501 19.348 hybrid contribution -0.435 1.152 -0.320 1.273 sum -1.863 -15.642 9.180 18.233 Atomic orbital electron populations 1.23084 0.78264 1.03967 1.01566 1.86135 1.21344 1.25910 1.88805 1.18594 0.90362 0.85140 0.99315 1.21111 1.00261 0.91051 1.07183 1.21342 0.93360 0.98572 0.96290 1.17236 0.91465 0.83794 1.01595 1.42660 1.28055 1.08158 1.54774 1.15475 0.83824 0.79428 0.79477 1.90881 1.20727 1.82009 1.52187 1.47996 1.20555 1.11378 1.55768 1.22024 0.85018 0.99114 0.96139 1.22595 1.01048 0.92895 0.98797 1.19627 0.86024 0.91125 0.82395 1.86106 1.47210 1.85747 1.20024 1.21400 1.27513 0.91575 1.17248 0.91529 1.25084 0.94580 0.98600 0.94952 1.69704 1.29954 1.34188 1.19150 0.86454 0.78269 0.84264 0.77868 1.19985 1.21080 1.20023 1.23248 0.99718 0.81563 0.96419 1.20550 1.00353 0.88847 1.03197 1.19710 0.88488 0.88102 1.11373 1.98353 1.71820 1.35820 1.97155 0.92552 0.92428 0.88189 0.84364 0.82995 0.75900 0.92820 0.92330 0.90601 0.90302 0.76848 0.91884 0.89418 0.92161 0.84087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.49 9.95 -19.72 -0.20 -3.68 16 3 C 0.11 1.40 6.68 -39.21 -0.26 1.14 16 4 C -0.18 -2.15 9.03 -39.47 -0.36 -2.50 16 5 C -0.08 -1.08 8.69 -39.41 -0.34 -1.42 16 6 C 0.16 2.20 6.30 -83.62 -0.53 1.67 16 7 N -0.69 -10.07 5.30 -14.19 -0.08 -10.14 16 8 C 0.72 13.68 8.33 -86.92 -0.72 12.96 16 9 O -0.58 -12.97 14.03 5.29 0.07 -12.90 16 10 N -0.62 -12.09 3.33 -176.22 -0.59 -12.68 16 11 C 0.10 1.62 6.16 -3.06 -0.02 1.60 16 12 C -0.12 -2.15 6.13 -24.89 -0.15 -2.30 16 13 C 0.25 5.77 0.87 -89.61 -0.08 5.69 16 14 O -0.58 -14.36 13.16 -35.23 -0.46 -14.83 16 15 C -0.54 -13.55 8.27 -34.44 -0.28 -13.83 16 16 H 0.07 1.63 7.79 -52.48 -0.41 1.23 16 17 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 18 N -0.89 -23.25 10.69 55.43 0.59 -22.66 16 19 Si 0.90 19.90 29.54 -169.99 -5.02 14.87 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 C 0.11 2.58 5.38 -2.51 -0.01 2.57 16 24 C -0.11 -1.33 9.74 -39.38 -0.38 -1.71 16 25 C -0.05 -0.62 6.33 -39.38 -0.25 -0.87 16 26 Cl -0.06 -0.70 28.50 -51.86 -1.48 -2.18 16 27 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 28 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.14 1.34 6.29 -52.49 -0.33 1.01 16 31 H 0.15 2.45 6.22 -52.48 -0.33 2.13 16 32 H 0.41 4.72 7.82 -40.82 -0.32 4.40 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 37 H 0.38 9.73 7.56 45.56 0.34 10.08 16 38 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.09 2.30 7.33 -51.93 -0.38 1.92 16 40 H 0.06 1.43 8.03 -51.93 -0.42 1.02 16 41 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 356.16 15.07 5.37 5.37 Total: -1.00 -29.52 356.16 -8.58 -38.10 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -4.30 Total: 14.84 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -2.50 Total: 5.89 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -0.07 Total: -45.49 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.59 Total: -31.41 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.48 Total: -2.18 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.52 -8.58 -38.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365481632.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.500 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds