Wall clock time and date at job start Sat Apr 11 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42096 * 110.54497 * 2 1 4 4 O 1.42101 * 110.54355 * 223.24740 * 2 1 3 5 5 C 1.76196 * 104.45042 * 111.62515 * 2 1 3 6 6 C 1.38626 * 120.40569 * 89.99404 * 5 2 1 7 7 C 1.38580 * 118.56319 * 179.97438 * 6 5 2 8 8 N 1.32296 * 119.19507 * 0.02562 * 7 6 5 9 9 C 1.32471 * 120.74101 * 359.97438 * 8 7 6 10 10 N 1.38412 * 119.21716 * 179.97438 * 9 8 7 11 11 C 1.46894 * 110.99980 * 124.30192 * 10 9 8 12 12 C 1.53241 * 109.34133 * 172.74754 * 11 10 9 13 13 N 1.47080 * 108.51625 * 53.83013 * 12 11 10 14 14 C 1.34783 * 120.87538 * 128.79539 * 13 12 11 15 15 O 1.21685 * 119.99480 * 174.82141 * 14 13 12 16 16 C 1.46371 * 120.00349 * 354.82152 * 14 13 12 17 17 H 1.07999 * 120.00190 * 351.95176 * 16 14 13 18 18 C 1.40051 * 120.00011 * 171.94917 * 16 14 13 19 19 N 1.30672 * 119.99800 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99836 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47345 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47038 * 119.99825 * 20 18 16 23 23 H 1.48498 * 109.47352 * 239.99799 * 20 18 16 24 24 C 1.47069 * 118.24016 * 308.81477 * 13 12 11 25 25 C 1.46903 * 110.99821 * 0.02562 * 10 9 8 26 26 N 1.32266 * 120.40196 * 269.98120 * 5 2 1 27 27 H 1.08997 * 109.46990 * 308.37626 * 1 2 3 28 28 H 1.09004 * 109.46899 * 68.37606 * 1 2 3 29 29 H 1.08999 * 109.46822 * 188.37057 * 1 2 3 30 30 H 1.08008 * 120.71828 * 359.96291 * 6 5 2 31 31 H 1.07996 * 120.40589 * 179.97438 * 7 6 5 32 32 H 1.09003 * 109.49583 * 292.71012 * 11 10 9 33 33 H 1.09003 * 109.49232 * 52.78740 * 11 10 9 34 34 H 1.09003 * 109.62739 * 294.12374 * 12 11 10 35 35 H 1.08999 * 109.62581 * 173.54035 * 12 11 10 36 36 H 0.97000 * 119.99216 * 179.97438 * 19 18 16 37 37 H 1.08996 * 109.63370 * 291.47624 * 24 13 12 38 38 H 1.09003 * 109.62875 * 170.89495 * 24 13 12 39 39 H 1.09002 * 109.49075 * 307.21045 * 25 10 9 40 40 H 1.08997 * 109.49193 * 67.28914 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2537 -0.6288 1.5861 6 6 2.4287 -1.9906 1.7771 7 6 2.7748 -2.4435 3.0403 8 7 2.9266 -1.5680 4.0205 9 6 2.7520 -0.2728 3.8046 10 7 2.9184 0.6154 4.8531 11 6 3.9101 1.6458 4.5178 12 6 3.9332 2.7068 5.6233 13 7 4.1480 2.0331 6.9129 14 6 5.1166 2.4443 7.7552 15 8 5.2200 1.9380 8.8569 16 6 6.0439 3.4998 7.3449 17 1 6.0374 3.8583 6.3261 18 6 6.9395 4.0450 8.2733 19 7 6.9469 3.6117 9.5061 20 14 8.1234 5.3916 7.7494 21 1 7.9152 5.7022 6.3122 22 1 7.8759 6.6112 8.5598 23 1 9.5199 4.9324 7.9598 24 6 3.2784 0.8986 7.2588 25 6 3.2816 -0.0911 6.0888 26 7 2.4211 0.1929 2.6090 27 1 -0.3633 0.6380 0.8056 28 1 -0.3633 0.3787 -0.9554 29 1 -0.3633 -1.0167 0.1496 30 1 2.2978 -2.6838 0.9592 31 1 2.9182 -3.4982 3.2225 32 1 4.8957 1.1881 4.4324 33 1 3.6425 2.1135 3.5703 34 1 2.9812 3.2374 5.6415 35 1 4.7445 3.4108 5.4382 36 1 7.5676 3.9891 10.1490 37 1 2.2635 1.2553 7.4342 38 1 3.6568 0.4071 8.1551 39 1 2.5580 -0.8834 6.2809 40 1 4.2759 -0.5244 5.9812 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412890900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:57 Heat of formation + Delta-G solvation = -10.606265 kcal Electronic energy + Delta-G solvation = -27333.936419 eV Core-core repulsion = 23278.060577 eV Total energy + Delta-G solvation = -4055.875842 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.53956 -38.88519 -37.52951 -36.71619 -36.36199 -34.25884 -33.82449 -32.55832 -31.27258 -30.78470 -30.02500 -27.27239 -26.06259 -25.49910 -23.53963 -22.97353 -21.13844 -19.83917 -18.96242 -18.35173 -18.09462 -16.94388 -16.70560 -16.23243 -16.03686 -15.79064 -15.50040 -15.43972 -14.60727 -14.48271 -14.27563 -14.20917 -13.99984 -13.80697 -13.67934 -13.45333 -12.57118 -12.51215 -12.42237 -12.19523 -11.88682 -11.66016 -11.54029 -11.48822 -11.37062 -11.31933 -11.12132 -11.01322 -10.81664 -10.74315 -10.50071 -10.23591 -10.07013 -9.53585 -8.90743 -8.55149 -7.65030 -7.33001 -6.24890 -4.69470 -0.51405 0.18030 0.63438 2.23009 2.88036 3.11090 3.15856 3.19867 3.23866 3.46432 3.63896 3.92265 4.05249 4.25747 4.28187 4.46666 4.51857 4.54131 4.65711 4.67547 4.90770 5.15593 5.21057 5.33028 5.51011 5.55318 5.63234 5.74083 5.82309 5.97692 6.08043 6.28099 6.37384 6.41894 6.58390 6.67532 7.01900 7.41367 7.49384 7.71752 8.06041 8.28613 8.97890 9.35182 10.51438 10.69893 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018672 B = 0.002768 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.228378 B =10112.438013 C =11031.002801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.507 3.493 3 O -0.906 6.906 4 O -0.926 6.926 5 C -0.350 4.350 6 C -0.192 4.192 7 C 0.173 3.827 8 N -0.516 5.516 9 C 0.489 3.511 10 N -0.453 5.453 11 C 0.048 3.952 12 C 0.127 3.873 13 N -0.647 5.647 14 C 0.561 3.439 15 O -0.576 6.576 16 C -0.545 4.545 17 H 0.074 0.926 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.907 3.093 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.276 1.276 24 C 0.123 3.877 25 C 0.057 3.943 26 N -0.444 5.444 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.164 0.836 31 H 0.179 0.821 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.269 0.731 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.599 -10.409 -19.277 25.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.681 3.319 3 O -0.903 6.903 4 O -0.922 6.922 5 C -0.580 4.580 6 C -0.218 4.218 7 C 0.003 3.997 8 N -0.236 5.236 9 C 0.132 3.868 10 N -0.171 5.171 11 C -0.079 4.079 12 C 0.002 3.998 13 N -0.386 5.386 14 C 0.367 3.633 15 O -0.458 6.458 16 C -0.581 4.581 17 H 0.092 0.908 18 C -0.132 4.132 19 N -0.397 5.397 20 Si 0.732 3.268 21 H -0.186 1.186 22 H -0.201 1.201 23 H -0.202 1.202 24 C -0.002 4.002 25 C -0.071 4.071 26 N -0.163 5.163 27 H 0.156 0.844 28 H 0.157 0.843 29 H 0.151 0.849 30 H 0.182 0.818 31 H 0.195 0.805 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.149 -9.440 -18.107 24.287 hybrid contribution 0.490 -0.763 -0.357 0.975 sum -12.659 -10.204 -18.464 24.602 Atomic orbital electron populations 1.30141 1.24306 1.12321 1.12589 1.05646 0.78484 0.74924 0.72883 1.93640 1.76888 1.35224 1.84519 1.93630 1.77842 1.62320 1.58452 1.33835 1.05971 0.99237 1.18984 1.22530 1.02567 0.95948 1.00763 1.23284 0.88695 1.00019 0.87744 1.68523 1.15549 1.03323 1.36163 1.21521 0.89692 0.87011 0.88557 1.58455 1.45511 1.11900 1.01262 1.22868 0.91431 0.92271 1.01295 1.21571 1.02340 0.93459 0.82392 1.48358 1.36632 1.33904 1.19675 1.18277 0.79000 0.83061 0.82977 1.90593 1.73926 1.59663 1.21663 1.20980 1.18695 1.21019 0.97429 0.90808 1.25729 0.96634 0.96523 0.94326 1.70014 1.30922 1.35708 1.03011 0.86322 0.80118 0.80703 0.79696 1.18637 1.20103 1.20156 1.21299 0.94705 0.88140 0.96025 1.22613 1.01000 0.96333 0.87109 1.68172 1.12296 1.37270 0.98518 0.84359 0.84314 0.84875 0.81797 0.80453 0.93060 0.88247 0.92473 0.87583 0.92062 0.92956 0.88739 0.89305 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -2.20 10.80 101.05 1.09 -1.11 16 2 S 2.51 20.12 5.88 -107.50 -0.63 19.49 16 3 O -0.91 -11.16 17.76 -57.54 -1.02 -12.19 16 4 O -0.93 -9.00 17.20 -57.54 -0.99 -9.99 16 5 C -0.35 -3.70 6.56 -17.22 -0.11 -3.82 16 6 C -0.19 -1.65 9.58 -39.31 -0.38 -2.03 16 7 C 0.17 1.65 11.30 -17.23 -0.19 1.46 16 8 N -0.52 -6.99 8.66 -13.93 -0.12 -7.11 16 9 C 0.49 7.41 7.17 -322.81 -2.32 5.09 16 10 N -0.45 -7.40 4.69 -175.09 -0.82 -8.23 16 11 C 0.05 0.80 5.49 -3.70 -0.02 0.78 16 12 C 0.13 2.39 6.52 -3.60 -0.02 2.36 16 13 N -0.65 -14.62 3.01 -174.13 -0.52 -15.14 16 14 C 0.56 15.75 7.61 -12.99 -0.10 15.65 16 15 O -0.58 -18.40 14.55 5.20 0.08 -18.33 16 16 C -0.54 -15.02 8.85 -35.63 -0.32 -15.34 16 17 H 0.07 1.85 5.73 -52.49 -0.30 1.55 16 18 C 0.09 2.41 5.50 -17.37 -0.10 2.32 16 19 N -0.77 -22.76 11.86 55.55 0.66 -22.10 16 20 Si 0.91 19.90 29.56 -169.99 -5.02 14.88 16 21 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 24 C 0.12 2.40 6.58 -3.61 -0.02 2.38 16 25 C 0.06 0.95 4.80 -3.70 -0.02 0.94 16 26 N -0.44 -6.21 9.37 -13.13 -0.12 -6.33 16 27 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.14 0.21 8.14 -51.92 -0.42 -0.21 16 29 H 0.13 0.18 8.14 -51.92 -0.42 -0.24 16 30 H 0.16 0.83 7.66 -52.48 -0.40 0.43 16 31 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.55 7.51 -51.93 -0.39 1.16 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.11 2.04 5.38 -51.93 -0.28 1.76 16 36 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.09 2.01 7.10 -51.93 -0.37 1.64 16 39 H 0.09 1.33 7.62 -51.93 -0.40 0.94 16 40 H 0.06 1.02 8.13 -51.93 -0.42 0.59 16 LS Contribution 348.95 15.07 5.26 5.26 Total: -1.00 -40.26 348.95 -10.42 -50.68 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.65 Total: 0.43 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -2.50 Total: 8.69 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.93 Total: -58.92 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -1.94 Total: -40.51 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 20.12 SS G_CDS: -0.63 Total: 19.49 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -40.26 -10.42 -50.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412890900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.070 kcal (2) G-P(sol) polarization free energy of solvation -40.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds