Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36005 * 117.00041 * 2 1 4 4 C 1.38648 * 120.08306 * 270.29728 * 3 2 1 5 5 Cl 1.73598 * 120.00694 * 0.02562 * 4 3 2 6 6 C 1.38342 * 119.99493 * 180.32271 * 4 3 2 7 7 C 1.38283 * 120.16062 * 359.67203 * 6 4 3 8 8 C 1.38190 * 120.16728 * 0.02562 * 7 6 4 9 9 C 1.38741 * 120.00748 * 0.02562 * 8 7 6 10 10 N 1.40168 * 120.08193 * 180.02562 * 9 8 7 11 11 C 1.34778 * 120.00630 * 34.63996 * 10 9 8 12 12 O 1.21602 * 119.99311 * 355.54496 * 11 10 9 13 13 N 1.34771 * 120.00555 * 175.82214 * 11 10 9 14 14 C 1.47427 * 125.64730 * 359.41691 * 13 11 10 15 15 C 1.55127 * 104.72391 * 155.81974 * 14 13 11 16 16 C 1.55156 * 101.48482 * 37.29407 * 15 14 13 17 17 O 1.42896 * 110.71855 * 82.69726 * 16 15 14 18 18 C 1.50701 * 110.87111 * 205.89938 * 16 15 14 19 19 H 1.08006 * 119.99942 * 355.06921 * 18 16 15 20 20 C 1.37875 * 120.00110 * 175.06319 * 18 16 15 21 21 N 1.31520 * 119.99845 * 0.02562 * 20 18 16 22 22 Si 1.86796 * 120.00239 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47059 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47476 * 120.00011 * 22 20 18 25 25 H 1.48498 * 109.47161 * 240.00361 * 22 20 18 26 26 C 1.47022 * 125.65141 * 179.72331 * 13 11 10 27 27 H 1.08998 * 109.47286 * 300.00215 * 1 2 3 28 28 H 1.09005 * 109.46925 * 60.00109 * 1 2 3 29 29 H 1.09000 * 109.47283 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.92445 * 179.70304 * 6 4 3 31 31 H 1.07996 * 119.91364 * 180.02562 * 7 6 4 32 32 H 1.08007 * 119.99803 * 180.02562 * 8 7 6 33 33 H 0.97001 * 119.99762 * 214.64607 * 10 9 8 34 34 H 1.09000 * 110.36283 * 274.74804 * 14 13 11 35 35 H 1.09000 * 110.36287 * 37.06759 * 14 13 11 36 36 H 1.09003 * 111.18562 * 279.19399 * 15 14 13 37 37 H 1.08992 * 110.90845 * 155.27479 * 15 14 13 38 38 H 0.96705 * 113.99858 * 185.02261 * 17 16 15 39 39 H 0.97001 * 119.99672 * 179.97438 * 21 20 18 40 40 H 1.08996 * 109.88038 * 300.44430 * 26 13 11 41 41 H 1.09001 * 109.87646 * 61.44788 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 2.3564 1.8339 -1.1997 5 17 1.9559 1.0664 -2.7044 6 6 2.9905 3.0634 -1.1976 7 6 3.3105 3.6781 -0.0010 8 6 2.9991 3.0669 1.1987 9 6 2.3642 1.8334 1.2047 10 7 2.0470 1.2123 2.4207 11 6 1.6867 1.9576 3.4843 12 8 1.7147 3.1712 3.4137 13 7 1.3007 1.3578 4.6278 14 6 1.2148 -0.0974 4.8481 15 6 1.3496 -0.2723 6.3836 16 6 0.5624 0.9589 6.9051 17 8 -0.8404 0.6880 6.9309 18 6 1.0496 1.3685 8.2710 19 1 1.7911 0.7716 8.7813 20 6 0.5490 2.5053 8.8693 21 7 -0.3542 3.2320 8.2481 22 14 1.1534 3.0135 10.5621 23 1 2.1618 2.0347 11.0421 24 1 1.7702 4.3620 10.4834 25 1 0.0084 3.0473 11.5071 26 6 0.8894 2.0463 5.8600 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.2357 3.5447 -2.1328 31 1 3.8052 4.6381 -0.0040 32 1 3.2500 3.5497 2.1318 33 1 2.0870 0.2461 2.4967 34 1 0.2528 -0.4770 4.5038 35 1 2.0303 -0.6074 4.3355 36 1 2.3934 -0.2291 6.6948 37 1 0.8838 -1.2014 6.7117 38 1 -1.3836 1.4497 7.1759 39 1 -0.7067 4.0316 8.6691 40 1 1.7024 2.6757 6.2218 41 1 0.0066 2.6557 5.6671 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413518361.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = -82.040644 kcal Electronic energy + Delta-G solvation = -27655.403501 eV Core-core repulsion = 23562.093574 eV Total energy + Delta-G solvation = -4093.309927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.83259 -39.44771 -37.76075 -37.28224 -36.54642 -34.54111 -34.32828 -32.28763 -30.56129 -30.30149 -29.21917 -27.83668 -26.94365 -25.21708 -23.42406 -22.64861 -22.17518 -19.83439 -19.61622 -18.52585 -17.70819 -17.16832 -17.13350 -16.33931 -15.79141 -15.60693 -15.23116 -15.04903 -14.58987 -14.48129 -14.32053 -13.99086 -13.51708 -13.21451 -13.02549 -12.94399 -12.57605 -12.41485 -12.07860 -11.86216 -11.74808 -11.71525 -11.51752 -11.14163 -11.10908 -10.90613 -10.76465 -10.51289 -10.45339 -10.25609 -10.16298 -9.68459 -9.40417 -8.76072 -8.74304 -8.40657 -8.31927 -7.87929 -6.34224 -4.42859 0.89334 1.04586 1.90202 2.80457 3.14051 3.17174 3.26259 3.29366 3.44756 3.78673 4.13293 4.24055 4.75571 4.91496 4.93481 5.10591 5.16025 5.18089 5.23929 5.26051 5.34387 5.51368 5.56518 5.67597 5.87540 5.89549 5.93427 6.08347 6.20526 6.36794 6.40605 6.61610 6.69999 6.77001 6.81634 7.09470 7.20665 7.25032 7.41632 7.67451 7.95762 8.22500 8.60832 8.79906 9.22555 9.31896 10.73619 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.023501 B = 0.002732 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.165871 B =10244.778683 C =10954.410270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.325 6.325 3 C 0.064 3.936 4 C -0.036 4.036 5 Cl -0.062 7.062 6 C -0.125 4.125 7 C -0.092 4.092 8 C -0.108 4.108 9 C 0.178 3.822 10 N -0.684 5.684 11 C 0.713 3.287 12 O -0.578 6.578 13 N -0.622 5.622 14 C 0.099 3.901 15 C -0.115 4.115 16 C 0.248 3.752 17 O -0.584 6.584 18 C -0.537 4.537 19 H 0.068 0.932 20 C 0.070 3.930 21 N -0.893 5.893 22 Si 0.904 3.096 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.121 3.879 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.097 0.903 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.155 0.845 33 H 0.410 0.590 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.383 0.617 39 H 0.270 0.730 40 H 0.068 0.932 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.376 -4.143 -17.262 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.242 6.242 3 C 0.017 3.983 4 C -0.063 4.063 5 Cl -0.033 7.033 6 C -0.144 4.144 7 C -0.111 4.111 8 C -0.128 4.128 9 C 0.080 3.920 10 N -0.332 5.332 11 C 0.416 3.584 12 O -0.456 6.456 13 N -0.358 5.358 14 C -0.024 4.024 15 C -0.153 4.153 16 C 0.208 3.792 17 O -0.393 6.393 18 C -0.575 4.575 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.532 5.532 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.207 1.207 26 C 0.000 4.000 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.172 0.828 33 H 0.247 0.753 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.233 0.767 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.488 -3.926 -17.530 18.516 hybrid contribution -0.182 0.550 0.906 1.075 sum 4.306 -3.376 -16.625 17.502 Atomic orbital electron populations 1.23040 0.78618 1.03400 1.01010 1.86061 1.20212 1.23714 1.94175 1.18018 1.01503 0.89036 0.89772 1.21000 1.04214 0.94904 0.86218 1.98357 1.92661 1.81434 1.30842 1.20936 1.00481 0.93559 0.99459 1.21072 0.99054 0.99997 0.90937 1.21531 0.96519 0.94518 1.00255 1.17710 0.96821 0.93692 0.83788 1.42676 1.71310 1.10570 1.08688 1.15484 0.78578 0.84931 0.79396 1.90892 1.60910 1.11509 1.82322 1.48037 1.67675 1.08003 1.12046 1.22382 1.00185 0.81127 0.98736 1.22765 1.00801 1.00079 0.91653 1.19514 0.79873 0.88017 0.91827 1.86110 1.18786 1.42078 1.92360 1.21513 1.24737 1.09659 1.01626 0.91422 1.25080 0.94283 0.95607 0.98332 1.69702 1.28664 1.16513 1.38318 0.86339 0.78790 0.78509 0.83228 1.19578 1.20747 1.20727 1.22987 0.99946 0.96683 0.80408 0.93355 0.93330 0.88502 0.84638 0.84453 0.82764 0.75347 0.91596 0.92397 0.90304 0.90389 0.76693 0.91998 0.91410 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.13 101.05 1.12 1.48 16 2 O -0.33 -4.09 9.43 -19.76 -0.19 -4.28 16 3 C 0.06 0.86 5.73 -39.06 -0.22 0.63 16 4 C -0.04 -0.43 6.33 -39.39 -0.25 -0.68 16 5 Cl -0.06 -0.67 28.50 -51.86 -1.48 -2.15 16 6 C -0.12 -1.31 9.82 -39.53 -0.39 -1.70 16 7 C -0.09 -1.02 10.04 -39.58 -0.40 -1.42 16 8 C -0.11 -1.52 8.70 -39.41 -0.34 -1.87 16 9 C 0.18 2.59 6.32 -83.49 -0.53 2.06 16 10 N -0.68 -10.39 5.15 -14.11 -0.07 -10.47 16 11 C 0.71 13.60 8.34 -86.92 -0.72 12.87 16 12 O -0.58 -12.76 14.09 5.28 0.07 -12.69 16 13 N -0.62 -12.10 3.32 -176.10 -0.59 -12.69 16 14 C 0.10 1.62 6.62 -2.41 -0.02 1.60 16 15 C -0.12 -2.15 6.24 -24.47 -0.15 -2.31 16 16 C 0.25 5.72 0.85 -89.94 -0.08 5.64 16 17 O -0.58 -14.06 13.07 -35.23 -0.46 -14.52 16 18 C -0.54 -13.54 8.13 -34.44 -0.28 -13.82 16 19 H 0.07 1.69 7.78 -52.48 -0.41 1.28 16 20 C 0.07 1.79 5.28 -17.82 -0.09 1.69 16 21 N -0.89 -23.14 10.96 55.43 0.61 -22.53 16 22 Si 0.90 19.99 29.54 -169.99 -5.02 14.96 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 26 C 0.12 2.81 5.23 -3.07 -0.02 2.79 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.15 2.47 6.19 -52.48 -0.33 2.14 16 33 H 0.41 5.40 7.00 -40.82 -0.29 5.12 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.76 7.22 -51.93 -0.37 0.38 16 36 H 0.08 1.42 8.05 -51.93 -0.42 1.01 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.38 9.48 7.45 45.56 0.34 9.82 16 39 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 40 H 0.07 1.72 7.81 -51.93 -0.41 1.31 16 41 H 0.07 1.68 7.92 -51.93 -0.41 1.27 16 LS Contribution 358.71 15.07 5.41 5.41 Total: -1.00 -28.42 358.71 -8.46 -36.88 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -4.38 Total: 15.08 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -2.36 Total: 6.98 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.05 Total: -45.68 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.57 Total: -31.49 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.48 Total: -2.15 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.42 -8.46 -36.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413518361.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.158 kcal (2) G-P(sol) polarization free energy of solvation -28.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds