Wall clock time and date at job start Sat Apr 11 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36005 * 117.00041 * 2 1 4 4 C 1.38648 * 120.08306 * 270.29728 * 3 2 1 5 5 Cl 1.73598 * 120.00694 * 0.02562 * 4 3 2 6 6 C 1.38342 * 119.99493 * 180.32271 * 4 3 2 7 7 C 1.38283 * 120.16062 * 359.67203 * 6 4 3 8 8 C 1.38190 * 120.16728 * 0.02562 * 7 6 4 9 9 C 1.38741 * 120.00748 * 0.02562 * 8 7 6 10 10 N 1.40168 * 120.08193 * 180.02562 * 9 8 7 11 11 C 1.34778 * 120.00630 * 34.63996 * 10 9 8 12 12 O 1.21602 * 119.99311 * 355.54496 * 11 10 9 13 13 N 1.34771 * 120.00555 * 175.82214 * 11 10 9 14 14 C 1.47427 * 125.64730 * 359.41691 * 13 11 10 15 15 C 1.55127 * 104.72391 * 155.81974 * 14 13 11 16 16 C 1.55156 * 101.48482 * 37.29407 * 15 14 13 17 17 O 1.42896 * 110.71855 * 82.69726 * 16 15 14 18 18 C 1.50701 * 110.87111 * 205.89938 * 16 15 14 19 19 H 1.08006 * 119.99942 * 355.06921 * 18 16 15 20 20 C 1.37875 * 120.00110 * 175.06319 * 18 16 15 21 21 N 1.31520 * 119.99845 * 0.02562 * 20 18 16 22 22 Si 1.86796 * 120.00239 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47059 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47476 * 120.00011 * 22 20 18 25 25 H 1.48498 * 109.47161 * 240.00361 * 22 20 18 26 26 C 1.47022 * 125.65141 * 179.72331 * 13 11 10 27 27 H 1.08998 * 109.47286 * 300.00215 * 1 2 3 28 28 H 1.09005 * 109.46925 * 60.00109 * 1 2 3 29 29 H 1.09000 * 109.47283 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.92445 * 179.70304 * 6 4 3 31 31 H 1.07996 * 119.91364 * 180.02562 * 7 6 4 32 32 H 1.08007 * 119.99803 * 180.02562 * 8 7 6 33 33 H 0.97001 * 119.99762 * 214.64607 * 10 9 8 34 34 H 1.09000 * 110.36283 * 274.74804 * 14 13 11 35 35 H 1.09000 * 110.36287 * 37.06759 * 14 13 11 36 36 H 1.09003 * 111.18562 * 279.19399 * 15 14 13 37 37 H 1.08992 * 110.90845 * 155.27479 * 15 14 13 38 38 H 0.96705 * 113.99858 * 185.02261 * 17 16 15 39 39 H 0.97001 * 119.99672 * 179.97438 * 21 20 18 40 40 H 1.08996 * 109.88038 * 300.44430 * 26 13 11 41 41 H 1.09001 * 109.87646 * 61.44788 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 2.3564 1.8339 -1.1997 5 17 1.9559 1.0664 -2.7044 6 6 2.9905 3.0634 -1.1976 7 6 3.3105 3.6781 -0.0010 8 6 2.9991 3.0669 1.1987 9 6 2.3642 1.8334 1.2047 10 7 2.0470 1.2123 2.4207 11 6 1.6867 1.9576 3.4843 12 8 1.7147 3.1712 3.4137 13 7 1.3007 1.3578 4.6278 14 6 1.2148 -0.0974 4.8481 15 6 1.3496 -0.2723 6.3836 16 6 0.5624 0.9589 6.9051 17 8 -0.8404 0.6880 6.9309 18 6 1.0496 1.3685 8.2710 19 1 1.7911 0.7716 8.7813 20 6 0.5490 2.5053 8.8693 21 7 -0.3542 3.2320 8.2481 22 14 1.1534 3.0135 10.5621 23 1 2.1618 2.0347 11.0421 24 1 1.7702 4.3620 10.4834 25 1 0.0084 3.0473 11.5071 26 6 0.8894 2.0463 5.8600 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.2357 3.5447 -2.1328 31 1 3.8052 4.6381 -0.0040 32 1 3.2500 3.5497 2.1318 33 1 2.0870 0.2461 2.4967 34 1 0.2528 -0.4770 4.5038 35 1 2.0303 -0.6074 4.3355 36 1 2.3934 -0.2291 6.6948 37 1 0.8838 -1.2014 6.7117 38 1 -1.3836 1.4497 7.1759 39 1 -0.7067 4.0316 8.6691 40 1 1.7024 2.6757 6.2218 41 1 0.0066 2.6557 5.6671 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413518361.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:59 Heat of formation + Delta-G solvation = -101.024649 kcal Electronic energy + Delta-G solvation = -27656.226710 eV Core-core repulsion = 23562.093574 eV Total energy + Delta-G solvation = -4094.133135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.05884 -40.73549 -39.25576 -38.30486 -37.50925 -36.16890 -35.71137 -34.23600 -32.02558 -31.28214 -30.44400 -29.50966 -27.84795 -26.98542 -24.80464 -23.80491 -23.27870 -21.49645 -21.07549 -19.75482 -19.09426 -18.79045 -18.32680 -17.41946 -17.21775 -16.90997 -16.66667 -16.36531 -16.16171 -15.72154 -15.50848 -15.11659 -14.86722 -14.78416 -14.66962 -14.21828 -13.95010 -13.52978 -13.46157 -13.31187 -13.08429 -12.87208 -12.73047 -12.69541 -12.53479 -12.36779 -12.25834 -12.10778 -12.01445 -11.53063 -11.40203 -11.19336 -10.95669 -10.66889 -10.30859 -9.75597 -9.71424 -9.16233 -8.27248 -6.42567 -0.06431 0.04534 0.95427 1.39139 1.43609 1.47405 1.54230 1.90530 2.30588 2.37409 2.79385 2.80992 2.99863 3.75528 3.85363 3.97531 3.99771 4.10317 4.18619 4.26639 4.32778 4.37299 4.38325 4.38711 4.54574 4.68282 4.72514 4.97723 4.98987 5.02631 5.09492 5.17662 5.24842 5.32627 5.36505 5.47207 5.64071 5.73582 5.90453 6.07444 6.27932 6.63768 6.81302 7.26669 7.32041 7.34631 8.78956 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.023501 B = 0.002732 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.165871 B =10244.778683 C =10954.410270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.331 6.331 3 C 0.064 3.936 4 C -0.044 4.044 5 Cl -0.049 7.049 6 C -0.110 4.110 7 C -0.085 4.085 8 C -0.125 4.125 9 C 0.150 3.850 10 N -0.667 5.667 11 C 0.713 3.287 12 O -0.616 6.616 13 N -0.627 5.627 14 C 0.103 3.897 15 C -0.109 4.109 16 C 0.234 3.766 17 O -0.586 6.586 18 C -0.555 4.555 19 H 0.067 0.933 20 C 0.026 3.974 21 N -0.915 5.915 22 Si 0.962 3.038 23 H -0.265 1.265 24 H -0.284 1.284 25 H -0.279 1.279 26 C 0.142 3.858 27 H 0.033 0.967 28 H 0.053 0.947 29 H 0.122 0.878 30 H 0.168 0.832 31 H 0.166 0.834 32 H 0.129 0.871 33 H 0.420 0.580 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.375 0.625 39 H 0.270 0.730 40 H 0.035 0.965 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.282 -5.341 -19.072 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.248 6.248 3 C 0.016 3.984 4 C -0.072 4.072 5 Cl -0.020 7.020 6 C -0.129 4.129 7 C -0.103 4.103 8 C -0.146 4.146 9 C 0.053 3.947 10 N -0.316 5.316 11 C 0.416 3.584 12 O -0.496 6.496 13 N -0.362 5.362 14 C -0.018 4.018 15 C -0.147 4.147 16 C 0.193 3.807 17 O -0.394 6.394 18 C -0.593 4.593 19 H 0.086 0.914 20 C -0.175 4.175 21 N -0.554 5.554 22 Si 0.788 3.212 23 H -0.189 1.189 24 H -0.210 1.210 25 H -0.204 1.204 26 C 0.019 3.981 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.140 0.860 30 H 0.185 0.815 31 H 0.183 0.817 32 H 0.147 0.853 33 H 0.259 0.741 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.225 0.775 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.411 -5.181 -19.385 20.782 hybrid contribution -0.459 0.936 1.336 1.695 sum 4.952 -4.244 -18.048 19.191 Atomic orbital electron populations 1.23175 0.77578 1.04929 1.00496 1.86047 1.21147 1.23403 1.94167 1.18061 1.01475 0.89177 0.89680 1.21175 1.04205 0.95409 0.86371 1.98363 1.92567 1.81322 1.29737 1.21301 0.98489 0.92722 1.00417 1.21354 0.98233 1.00774 0.89952 1.21482 0.97758 0.94801 1.00559 1.17897 0.98547 0.94474 0.83748 1.42335 1.70555 1.10697 1.07994 1.15580 0.78289 0.84650 0.79895 1.90865 1.62315 1.13357 1.83082 1.47923 1.67909 1.09129 1.11280 1.22526 1.02400 0.79341 0.97559 1.22757 1.00412 0.98526 0.93026 1.19716 0.79645 0.90182 0.91143 1.86101 1.19349 1.41669 1.92301 1.21840 1.24814 1.09862 1.02782 0.91440 1.25795 0.94511 0.95743 1.01434 1.69807 1.29450 1.16693 1.39424 0.85440 0.78360 0.77905 0.79541 1.18897 1.21021 1.20431 1.22433 0.97153 0.96319 0.82229 0.94828 0.92867 0.86003 0.81476 0.81678 0.85281 0.74132 0.90710 0.88228 0.89643 0.88988 0.77550 0.92111 0.94673 0.95005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.13 113.37 1.26 1.88 16 2 O -0.33 -7.73 9.43 -93.61 -0.88 -8.61 16 3 C 0.06 1.60 5.73 22.61 0.13 1.73 16 4 C -0.04 -0.95 6.33 22.39 0.14 -0.81 16 5 Cl -0.05 -0.93 28.50 -2.72 -0.08 -1.01 16 6 C -0.11 -2.00 9.82 22.31 0.22 -1.78 16 7 C -0.08 -1.72 10.04 22.27 0.22 -1.50 16 8 C -0.13 -3.53 8.70 22.38 0.19 -3.34 16 9 C 0.15 4.30 6.32 38.17 0.24 4.54 16 10 N -0.67 -20.00 5.15 -316.80 -1.63 -21.63 16 11 C 0.71 27.69 8.34 179.06 1.49 29.19 16 12 O -0.62 -28.38 14.09 -4.04 -0.06 -28.44 16 13 N -0.63 -24.65 3.32 -829.31 -2.76 -27.41 16 14 C 0.10 3.21 6.62 86.93 0.58 3.79 16 15 C -0.11 -3.96 6.24 32.06 0.20 -3.76 16 16 C 0.23 10.92 0.85 -10.35 -0.01 10.91 16 17 O -0.59 -28.69 13.07 -148.98 -1.95 -30.63 16 18 C -0.55 -28.36 8.13 25.60 0.21 -28.15 16 19 H 0.07 3.37 7.78 -2.91 -0.02 3.34 16 20 C 0.03 1.35 5.28 84.65 0.45 1.80 16 21 N -0.91 -48.93 10.96 21.45 0.24 -48.69 16 22 Si 0.96 41.45 29.54 68.60 2.03 43.48 16 23 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 26 C 0.14 6.85 5.23 86.73 0.45 7.30 16 27 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 31 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.13 4.32 6.19 -2.91 -0.02 4.30 16 33 H 0.42 10.46 7.00 -92.71 -0.65 9.81 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.10 2.29 7.22 -2.39 -0.02 2.27 16 36 H 0.09 2.96 8.05 -2.39 -0.02 2.94 16 37 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.38 19.29 7.45 -74.05 -0.55 18.74 16 39 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 40 H 0.03 1.88 7.81 -2.39 -0.02 1.86 16 41 H 0.03 1.71 7.92 -2.39 -0.02 1.70 16 Total: -1.00 -63.75 358.71 0.58 -63.17 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: -0.11 Total: 37.98 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: 5.78 Total: 21.79 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -4.15 Total: -97.73 kcal Atomic # 8 Polarization: -64.79 SS G_CDS: -2.89 Total: -67.68 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.08 Total: -1.01 kcal Total: -63.75 0.58 -63.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413518361.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.852 kcal (2) G-P(sol) polarization free energy of solvation -63.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds