Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46507 * 119.99887 * 2 1 4 4 C 1.50700 * 109.46733 * 275.00038 * 3 2 1 5 5 H 1.08000 * 120.00138 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99736 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00307 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99932 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47080 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47027 * 119.99852 * 8 6 4 11 11 H 1.48504 * 109.47213 * 239.99507 * 8 6 4 12 12 S 1.65599 * 120.00249 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40424 * 336.46526 * 12 2 1 14 14 O 1.42103 * 106.40471 * 203.53927 * 12 2 1 15 15 N 1.65606 * 107.21317 * 90.00001 * 12 2 1 16 16 C 1.46959 * 120.59416 * 90.00457 * 15 12 2 17 17 C 1.53369 * 108.63404 * 235.24563 * 16 15 12 18 18 N 1.46960 * 108.63592 * 310.57050 * 17 16 15 19 19 S 1.65597 * 120.59945 * 235.20308 * 18 17 16 20 20 C 1.81401 * 108.33323 * 180.02562 * 19 18 17 21 21 N 1.49356 * 108.73127 * 297.53643 * 19 18 17 22 22 O 1.42105 * 108.33053 * 55.06445 * 19 18 17 23 23 C 1.46971 * 118.80771 * 55.48102 * 18 17 16 24 24 C 1.46964 * 120.59535 * 270.01864 * 15 12 2 25 25 H 1.09009 * 109.47370 * 270.00131 * 1 2 3 26 26 H 1.08999 * 109.47549 * 29.99793 * 1 2 3 27 27 H 1.09000 * 109.47500 * 150.00617 * 1 2 3 28 28 H 1.09000 * 109.46893 * 35.00015 * 3 2 1 29 29 H 1.09000 * 109.46925 * 154.99785 * 3 2 1 30 30 H 0.96998 * 119.99736 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.61312 * 115.49511 * 16 15 12 32 32 H 1.09004 * 109.61084 * 354.98773 * 16 15 12 33 33 H 1.09003 * 109.60811 * 190.82963 * 17 16 15 34 34 H 1.09000 * 109.75216 * 70.40914 * 17 16 15 35 35 H 1.09002 * 109.46703 * 299.99948 * 20 19 18 36 36 H 1.08992 * 109.46774 * 60.00226 * 20 19 18 37 37 H 1.09004 * 109.46555 * 180.02562 * 20 19 18 38 38 H 0.96996 * 119.99630 * 297.52371 * 21 19 18 39 39 H 1.09002 * 109.60791 * 64.26543 * 23 18 17 40 40 H 1.08995 * 109.60891 * 184.77784 * 23 18 17 41 41 H 1.08998 * 109.61460 * 244.49886 * 24 15 12 42 42 H 1.09003 * 109.61020 * 4.84064 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9288 1.1934 -2.2332 6 6 3.0005 2.9503 -1.6665 7 7 3.5033 3.6470 -0.6707 8 14 3.1795 3.5659 -3.4211 9 1 2.5320 2.6061 -4.3509 10 1 2.5287 4.8947 -3.5482 11 1 4.6206 3.6862 -3.7589 12 16 2.2930 -1.4341 0.0006 13 8 1.4114 -2.4063 0.5454 14 8 3.5760 -1.1565 0.5449 15 7 2.5381 -1.8592 -1.5811 16 6 3.7443 -1.4187 -2.2957 17 6 3.3166 -0.6781 -3.5688 18 7 2.3316 -1.5023 -4.2831 19 16 2.5761 -1.9265 -5.8650 20 6 1.1688 -2.9331 -6.4099 21 7 2.6140 -0.6848 -6.6942 22 8 3.8394 -2.5695 -5.9652 23 6 1.1226 -1.9381 -3.5701 24 6 1.5530 -2.6834 -2.2953 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5137 28 1 1.6500 2.0043 0.5895 29 1 3.1857 1.1178 0.4343 30 1 3.9667 4.4806 -0.8474 31 1 4.3487 -2.2858 -2.5623 32 1 4.3223 -0.7486 -1.6593 33 1 4.1859 -0.5130 -4.2054 34 1 2.8694 0.2802 -3.3048 35 1 1.0998 -3.8269 -5.7899 36 1 0.2502 -2.3540 -6.3162 37 1 1.3113 -3.2234 -7.4509 38 1 1.8326 -0.1127 -6.7466 39 1 0.5217 -1.0686 -3.3036 40 1 0.5426 -2.6053 -4.2076 41 1 2.0013 -3.6405 -2.5620 42 1 0.6851 -2.8511 -1.6576 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424584718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = -49.158961 kcal Electronic energy + Delta-G solvation = -28359.538009 eV Core-core repulsion = 24437.434348 eV Total energy + Delta-G solvation = -3922.103661 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.37545 -36.82027 -36.26751 -35.55705 -35.31297 -33.57628 -32.58112 -32.13838 -31.59518 -29.41774 -27.86419 -26.20589 -25.14730 -23.89363 -22.51195 -21.17136 -19.23922 -18.38530 -17.79471 -16.93755 -16.70978 -16.54494 -16.29739 -15.93951 -15.53077 -14.86731 -14.78119 -14.38157 -14.22502 -14.04582 -13.62262 -13.48341 -13.40551 -13.33763 -12.59183 -12.44638 -12.32658 -12.23560 -11.97874 -11.86682 -11.72649 -11.57819 -11.41333 -11.22014 -11.20385 -11.16901 -10.79968 -10.76983 -10.58727 -10.14981 -10.01123 -9.66016 -9.48237 -9.35145 -8.58094 -8.40634 -8.08596 -6.18326 -4.26016 -0.03967 1.13542 2.70311 3.21566 3.30361 3.32829 3.36868 3.61372 3.99141 4.02390 4.30136 4.34647 4.60229 4.69502 4.73194 4.94066 4.99190 5.16042 5.26412 5.32043 5.38499 5.43305 5.47651 5.57604 5.73197 5.91401 5.91785 5.98535 6.16227 6.35588 6.42483 6.45591 6.55271 6.76933 7.25141 7.27451 7.36382 7.55858 7.78599 8.07699 8.78836 9.40439 10.89429 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010350 B = 0.006691 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.711668 B = 4183.590482 C = 5987.037290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.996 5.996 3 C 0.244 3.756 4 C -0.543 4.543 5 H 0.069 0.931 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.882 3.118 9 H -0.266 1.266 10 H -0.284 1.284 11 H -0.280 1.280 12 S 2.785 3.215 13 O -0.999 6.999 14 O -0.973 6.973 15 N -1.000 6.000 16 C 0.117 3.883 17 C 0.107 3.893 18 N -1.001 6.001 19 S 2.504 3.496 20 C -0.671 4.671 21 N -1.235 6.235 22 O -0.931 6.931 23 C 0.092 3.908 24 C 0.110 3.890 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.265 0.735 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.383 0.617 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 -11.599 -7.264 16.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.838 5.838 3 C 0.122 3.878 4 C -0.582 4.582 5 H 0.087 0.913 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.709 3.291 9 H -0.190 1.190 10 H -0.210 1.210 11 H -0.206 1.206 12 S 2.794 3.206 13 O -0.983 6.983 14 O -0.957 6.957 15 N -0.838 5.838 16 C -0.011 4.011 17 C -0.019 4.019 18 N -0.834 5.834 19 S 2.594 3.406 20 C -0.824 4.824 21 N -1.054 6.054 22 O -0.911 6.911 23 C -0.037 4.037 24 C -0.019 4.019 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.105 0.895 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.205 0.795 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.168 -12.195 -6.838 15.712 hybrid contribution -1.390 0.686 -1.137 1.922 sum -8.558 -11.508 -7.975 16.410 Atomic orbital electron populations 1.21203 0.80191 1.01859 1.00651 1.57680 1.14142 1.23522 1.88495 1.19239 0.92176 0.78802 0.97633 1.21623 1.36919 1.06857 0.92851 0.91262 1.24939 0.95146 0.96501 0.97028 1.69936 1.36424 1.15109 1.30878 0.86708 0.78465 0.79182 0.84705 1.18998 1.21035 1.20592 1.01851 0.73178 0.72696 0.72890 1.93527 1.67424 1.60475 1.76835 1.93581 1.40723 1.85193 1.76239 1.58131 1.29274 1.64775 1.31639 1.21695 0.85805 0.99338 0.94217 1.22154 0.91489 0.95239 0.93051 1.57935 1.29470 1.66441 1.29603 1.10720 0.77642 0.78700 0.73538 1.30682 1.22238 1.16864 1.12593 1.72821 1.41351 1.31110 1.60088 1.93516 1.34993 1.77428 1.85181 1.22102 0.86886 0.99926 0.94752 1.21718 0.92582 0.93586 0.93966 0.93793 0.90790 0.93147 0.94468 0.93138 0.92532 0.91422 0.87267 0.89512 0.87227 0.86372 0.85759 0.85170 0.79530 0.89687 0.89789 0.91190 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.64 10.31 59.84 0.62 2.26 16 2 N -1.00 -18.81 3.23 -123.05 -0.40 -19.21 16 3 C 0.24 5.60 5.41 -5.19 -0.03 5.57 16 4 C -0.54 -12.80 8.78 -34.44 -0.30 -13.10 16 5 H 0.07 1.52 5.57 -52.49 -0.29 1.22 16 6 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -24.13 13.29 55.43 0.74 -23.39 16 8 Si 0.88 19.63 29.54 -169.99 -5.02 14.61 16 9 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 S 2.78 51.76 6.07 -107.50 -0.65 51.11 16 13 O -1.00 -18.90 15.90 -57.17 -0.91 -19.80 16 14 O -0.97 -21.52 15.38 -57.17 -0.88 -22.40 16 15 N -1.00 -15.39 3.32 -113.00 -0.38 -15.76 16 16 C 0.12 1.85 6.55 -3.60 -0.02 1.83 16 17 C 0.11 1.66 6.70 -3.60 -0.02 1.64 16 18 N -1.00 -12.11 3.32 -113.00 -0.37 -12.48 16 19 S 2.50 29.07 5.32 -107.50 -0.57 28.50 16 20 C -0.67 -4.21 9.24 101.05 0.93 -3.28 16 21 N -1.23 -17.10 14.07 60.35 0.85 -16.25 16 22 O -0.93 -15.36 18.13 -35.23 -0.64 -16.00 16 23 C 0.09 0.86 6.68 -3.36 -0.02 0.83 16 24 C 0.11 1.24 6.57 -3.37 -0.02 1.21 16 25 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 26 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 27 H 0.05 0.63 7.79 -51.93 -0.40 0.23 16 28 H 0.04 0.91 8.11 -51.93 -0.42 0.48 16 29 H 0.05 1.30 6.91 -51.93 -0.36 0.94 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.11 1.94 7.09 -51.93 -0.37 1.57 16 33 H 0.09 1.36 7.91 -51.93 -0.41 0.95 16 34 H 0.11 1.94 5.07 -51.93 -0.26 1.67 16 35 H 0.12 0.55 7.73 -51.92 -0.40 0.15 16 36 H 0.12 0.50 7.91 -51.93 -0.41 0.09 16 37 H 0.13 0.77 8.14 -51.92 -0.42 0.34 16 38 H 0.38 4.42 8.92 -21.58 -0.19 4.23 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.42 5.58 -51.93 -0.29 0.13 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.10 0.99 7.09 -51.93 -0.37 0.62 16 LS Contribution 357.33 15.07 5.38 5.38 Total: -1.00 -35.39 357.33 -7.67 -43.06 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.85 Total: 4.07 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 1.03 Total: -1.42 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: 0.44 Total: -87.10 kcal Atomic # 8 Polarization: -55.78 SS G_CDS: -2.43 Total: -58.21 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Atomic # 16 Polarization: 80.83 SS G_CDS: -1.22 Total: 79.60 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.39 -7.67 -43.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424584718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.098 kcal (2) G-P(sol) polarization free energy of solvation -35.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds