Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46507 * 119.99887 * 2 1 4 4 C 1.50700 * 109.46733 * 275.00038 * 3 2 1 5 5 H 1.08000 * 120.00138 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99736 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00307 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99932 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47080 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47027 * 119.99852 * 8 6 4 11 11 H 1.48504 * 109.47213 * 239.99507 * 8 6 4 12 12 S 1.65599 * 120.00249 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40424 * 336.46526 * 12 2 1 14 14 O 1.42103 * 106.40471 * 203.53927 * 12 2 1 15 15 N 1.65606 * 107.21317 * 90.00001 * 12 2 1 16 16 C 1.46959 * 120.59416 * 90.00457 * 15 12 2 17 17 C 1.53369 * 108.63404 * 235.24563 * 16 15 12 18 18 N 1.46960 * 108.63592 * 310.57050 * 17 16 15 19 19 S 1.65597 * 120.59945 * 235.20308 * 18 17 16 20 20 C 1.81401 * 108.33323 * 180.02562 * 19 18 17 21 21 N 1.49356 * 108.73127 * 297.53643 * 19 18 17 22 22 O 1.42105 * 108.33053 * 55.06445 * 19 18 17 23 23 C 1.46971 * 118.80771 * 55.48102 * 18 17 16 24 24 C 1.46964 * 120.59535 * 270.01864 * 15 12 2 25 25 H 1.09009 * 109.47370 * 270.00131 * 1 2 3 26 26 H 1.08999 * 109.47549 * 29.99793 * 1 2 3 27 27 H 1.09000 * 109.47500 * 150.00617 * 1 2 3 28 28 H 1.09000 * 109.46893 * 35.00015 * 3 2 1 29 29 H 1.09000 * 109.46925 * 154.99785 * 3 2 1 30 30 H 0.96998 * 119.99736 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.61312 * 115.49511 * 16 15 12 32 32 H 1.09004 * 109.61084 * 354.98773 * 16 15 12 33 33 H 1.09003 * 109.60811 * 190.82963 * 17 16 15 34 34 H 1.09000 * 109.75216 * 70.40914 * 17 16 15 35 35 H 1.09002 * 109.46703 * 299.99948 * 20 19 18 36 36 H 1.08992 * 109.46774 * 60.00226 * 20 19 18 37 37 H 1.09004 * 109.46555 * 180.02562 * 20 19 18 38 38 H 0.96996 * 119.99630 * 297.52371 * 21 19 18 39 39 H 1.09002 * 109.60791 * 64.26543 * 23 18 17 40 40 H 1.08995 * 109.60891 * 184.77784 * 23 18 17 41 41 H 1.08998 * 109.61460 * 244.49886 * 24 15 12 42 42 H 1.09003 * 109.61020 * 4.84064 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9288 1.1934 -2.2332 6 6 3.0005 2.9503 -1.6665 7 7 3.5033 3.6470 -0.6707 8 14 3.1795 3.5659 -3.4211 9 1 2.5320 2.6061 -4.3509 10 1 2.5287 4.8947 -3.5482 11 1 4.6206 3.6862 -3.7589 12 16 2.2930 -1.4341 0.0006 13 8 1.4114 -2.4063 0.5454 14 8 3.5760 -1.1565 0.5449 15 7 2.5381 -1.8592 -1.5811 16 6 3.7443 -1.4187 -2.2957 17 6 3.3166 -0.6781 -3.5688 18 7 2.3316 -1.5023 -4.2831 19 16 2.5761 -1.9265 -5.8650 20 6 1.1688 -2.9331 -6.4099 21 7 2.6140 -0.6848 -6.6942 22 8 3.8394 -2.5695 -5.9652 23 6 1.1226 -1.9381 -3.5701 24 6 1.5530 -2.6834 -2.2953 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5137 28 1 1.6500 2.0043 0.5895 29 1 3.1857 1.1178 0.4343 30 1 3.9667 4.4806 -0.8474 31 1 4.3487 -2.2858 -2.5623 32 1 4.3223 -0.7486 -1.6593 33 1 4.1859 -0.5130 -4.2054 34 1 2.8694 0.2802 -3.3048 35 1 1.0998 -3.8269 -5.7899 36 1 0.2502 -2.3540 -6.3162 37 1 1.3113 -3.2234 -7.4509 38 1 1.8326 -0.1127 -6.7466 39 1 0.5217 -1.0686 -3.3036 40 1 0.5426 -2.6053 -4.2076 41 1 2.0013 -3.6405 -2.5620 42 1 0.6851 -2.8511 -1.6576 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424584718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = -80.778797 kcal Electronic energy + Delta-G solvation = -28360.909148 eV Core-core repulsion = 24437.434348 eV Total energy + Delta-G solvation = -3923.474800 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.42404 -38.37905 -37.30848 -37.15595 -36.89278 -34.65393 -34.44509 -33.05873 -32.58068 -30.05536 -29.58716 -27.30154 -26.67831 -24.92225 -24.21599 -22.31288 -20.37296 -19.47648 -19.07748 -18.59036 -18.26709 -17.68711 -17.44569 -17.28185 -16.63678 -16.29529 -15.82279 -15.67172 -15.33704 -15.12354 -15.01954 -14.81216 -14.15028 -14.06483 -13.95727 -13.92390 -13.67252 -13.55025 -13.38010 -13.06422 -13.00749 -12.99733 -12.87390 -12.68118 -12.54150 -12.50112 -12.40046 -12.20896 -11.95561 -11.69863 -11.58153 -10.77435 -10.60936 -10.53191 -10.20140 -9.71582 -9.44813 -8.13967 -6.25380 -0.86163 -0.32684 1.41667 1.49716 1.55195 1.81681 2.02669 2.42979 2.58213 2.83870 3.19766 3.23292 3.36412 3.50844 3.95034 4.00741 4.13268 4.17049 4.24139 4.25348 4.31144 4.39277 4.58897 4.67264 4.67553 4.77512 4.89067 4.95762 5.04055 5.12064 5.15671 5.29925 5.37150 5.49841 5.54778 5.64072 5.82674 5.99708 6.15907 6.49212 6.88387 7.44441 8.94699 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010350 B = 0.006691 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.711668 B = 4183.590482 C = 5987.037290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -1.001 6.001 3 C 0.257 3.743 4 C -0.528 4.528 5 H 0.089 0.911 6 C 0.018 3.982 7 N -0.930 5.930 8 Si 0.935 3.065 9 H -0.245 1.245 10 H -0.286 1.286 11 H -0.292 1.292 12 S 2.796 3.204 13 O -0.999 6.999 14 O -1.017 7.017 15 N -0.996 5.996 16 C 0.118 3.882 17 C 0.112 3.888 18 N -0.999 5.999 19 S 2.505 3.495 20 C -0.635 4.635 21 N -1.293 6.293 22 O -0.991 6.991 23 C 0.084 3.916 24 C 0.093 3.907 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.262 0.738 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.150 0.850 36 H 0.162 0.838 37 H 0.144 0.856 38 H 0.389 0.611 39 H 0.088 0.912 40 H 0.141 0.859 41 H 0.092 0.908 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.417 -14.200 -9.552 21.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.843 5.843 3 C 0.134 3.866 4 C -0.567 4.567 5 H 0.107 0.893 6 C -0.181 4.181 7 N -0.570 5.570 8 Si 0.761 3.239 9 H -0.168 1.168 10 H -0.212 1.212 11 H -0.219 1.219 12 S 2.805 3.195 13 O -0.983 6.983 14 O -1.002 7.002 15 N -0.837 5.837 16 C -0.010 4.010 17 C -0.016 4.016 18 N -0.831 5.831 19 S 2.602 3.398 20 C -0.794 4.794 21 N -1.112 6.112 22 O -0.972 6.972 23 C -0.043 4.043 24 C -0.034 4.034 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.168 0.832 36 H 0.181 0.819 37 H 0.162 0.838 38 H 0.212 0.788 39 H 0.106 0.894 40 H 0.159 0.841 41 H 0.110 0.890 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.560 -14.783 -9.111 20.324 hybrid contribution -0.490 1.296 -0.425 1.449 sum -11.050 -13.488 -9.535 19.873 Atomic orbital electron populations 1.21479 0.77778 1.03663 1.01770 1.57565 1.15749 1.21915 1.89028 1.18774 0.90726 0.80159 0.96975 1.21955 1.35079 1.06124 0.93516 0.89316 1.25646 0.95375 0.97169 0.99947 1.70064 1.38271 1.15772 1.32876 0.85856 0.77688 0.78899 0.81424 1.16768 1.21198 1.21867 1.01321 0.72167 0.72440 0.73535 1.93516 1.67202 1.60139 1.77451 1.93523 1.43034 1.85734 1.77883 1.57862 1.30016 1.65051 1.30739 1.21617 0.86066 0.99421 0.93888 1.21786 0.92014 0.94828 0.92942 1.57901 1.29544 1.65851 1.29839 1.09935 0.78428 0.78742 0.72692 1.30359 1.18766 1.16736 1.13561 1.72716 1.44561 1.34252 1.59667 1.93456 1.39701 1.78373 1.85651 1.22472 0.86064 1.01073 0.94716 1.22223 0.92222 0.94092 0.94822 0.93144 0.90556 0.89720 0.96334 0.96744 0.92851 0.90074 0.90279 0.90624 0.89494 0.83181 0.81947 0.83752 0.78792 0.89376 0.84104 0.89013 0.87036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.79 10.31 127.77 1.32 4.11 16 2 N -1.00 -37.47 3.23 -543.21 -1.75 -39.23 16 3 C 0.26 12.23 5.41 85.63 0.46 12.69 16 4 C -0.53 -25.15 8.78 25.60 0.22 -24.92 16 5 H 0.09 3.81 5.57 -2.91 -0.02 3.80 16 6 C 0.02 0.93 5.46 84.65 0.46 1.40 16 7 N -0.93 -52.66 13.29 21.45 0.28 -52.37 16 8 Si 0.94 40.93 29.54 68.60 2.03 42.96 16 9 H -0.24 -9.75 7.11 99.48 0.71 -9.05 16 10 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 S 2.80 102.77 6.07 -56.49 -0.34 102.42 16 13 O -1.00 -35.92 15.90 -128.00 -2.04 -37.96 16 14 O -1.02 -46.74 15.38 -128.00 -1.97 -48.71 16 15 N -1.00 -29.14 3.32 -511.44 -1.70 -30.83 16 16 C 0.12 3.76 6.55 86.42 0.57 4.32 16 17 C 0.11 3.44 6.70 86.42 0.58 4.02 16 18 N -1.00 -21.32 3.32 -511.43 -1.70 -23.01 16 19 S 2.51 51.16 5.32 -56.49 -0.30 50.86 16 20 C -0.63 -3.67 9.24 113.37 1.05 -2.62 16 21 N -1.29 -33.94 14.07 37.02 0.52 -33.42 16 22 O -0.99 -31.84 18.13 -148.98 -2.70 -34.54 16 23 C 0.08 1.14 6.68 86.56 0.58 1.72 16 24 C 0.09 1.71 6.57 86.57 0.57 2.27 16 25 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.08 2.13 8.07 -2.39 -0.02 2.11 16 27 H 0.08 1.81 7.79 -2.39 -0.02 1.79 16 28 H 0.02 0.94 8.11 -2.39 -0.02 0.92 16 29 H 0.01 0.79 6.91 -2.39 -0.02 0.78 16 30 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.08 2.99 7.09 -2.38 -0.02 2.97 16 33 H 0.08 2.46 7.91 -2.39 -0.02 2.44 16 34 H 0.09 3.04 5.07 -2.39 -0.01 3.03 16 35 H 0.15 0.14 7.73 -2.39 -0.02 0.12 16 36 H 0.16 -0.08 7.91 -2.39 -0.02 -0.10 16 37 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.39 8.27 8.92 -104.95 -0.94 7.34 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.14 0.30 5.58 -2.39 -0.01 0.28 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.11 1.74 7.09 -2.39 -0.02 1.73 16 Total: -1.00 -82.90 357.33 -3.75 -86.65 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.11 Total: 14.19 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 5.81 Total: 2.98 kcal Atomic # 7 Polarization: -174.52 SS G_CDS: -4.34 Total: -178.86 kcal Atomic # 8 Polarization: -114.50 SS G_CDS: -6.71 Total: -121.20 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 16 Polarization: 153.93 SS G_CDS: -0.64 Total: 153.28 kcal Total: -82.90 -3.75 -86.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424584718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.871 kcal (2) G-P(sol) polarization free energy of solvation -82.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds