Wall clock time and date at job start Sat Apr 11 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99999 * 2 1 4 4 C 1.50701 * 109.46992 * 85.00120 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47294 * 60.00559 * 8 6 4 10 10 H 1.48503 * 109.46954 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47431 * 300.00157 * 8 6 4 12 12 S 1.65593 * 119.99605 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40784 * 23.53826 * 12 2 1 14 14 O 1.42105 * 106.40278 * 156.45824 * 12 2 1 15 15 N 1.65598 * 107.21993 * 269.99784 * 12 2 1 16 16 C 1.46969 * 120.59237 * 269.72385 * 15 12 2 17 17 C 1.53812 * 108.39578 * 124.75786 * 16 15 12 18 18 N 1.46958 * 108.58212 * 49.63610 * 17 16 15 19 19 S 1.65607 * 120.59629 * 124.62680 * 18 17 16 20 20 C 1.81399 * 108.33029 * 0.02562 * 19 18 17 21 21 N 1.49350 * 108.73081 * 242.49099 * 19 18 17 22 22 O 1.42099 * 108.33439 * 124.95709 * 19 18 17 23 23 C 1.46969 * 118.81210 * 304.64581 * 18 17 16 24 24 C 1.46958 * 120.59462 * 90.00085 * 15 12 2 25 25 H 1.09000 * 109.47587 * 89.99812 * 1 2 3 26 26 H 1.08997 * 109.47205 * 209.99963 * 1 2 3 27 27 H 1.09003 * 109.46728 * 329.99785 * 1 2 3 28 28 H 1.09002 * 109.47391 * 325.00111 * 3 2 1 29 29 H 1.09001 * 109.46813 * 205.00167 * 3 2 1 30 30 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.61131 * 244.53809 * 16 15 12 32 32 H 1.08998 * 109.61196 * 5.05081 * 16 15 12 33 33 H 1.09001 * 109.74012 * 289.84571 * 17 16 15 34 34 H 1.09007 * 109.67335 * 169.38483 * 17 16 15 35 35 H 1.08996 * 109.47148 * 61.10653 * 20 19 18 36 36 H 1.09000 * 109.47251 * 181.10660 * 20 19 18 37 37 H 1.08999 * 109.47125 * 301.10933 * 20 19 18 38 38 H 0.96998 * 120.00215 * 179.97438 * 21 19 18 39 39 H 1.09001 * 109.60806 * 295.48034 * 23 18 17 40 40 H 1.09004 * 109.60633 * 174.97230 * 23 18 17 41 41 H 1.08997 * 109.61104 * 354.94973 * 24 15 12 42 42 H 1.09006 * 109.61286 * 115.28808 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 1.4154 5 1 1.9290 1.1934 2.2332 6 6 3.0007 2.9503 1.6665 7 7 3.5034 3.6468 0.6707 8 14 3.1797 3.5658 3.4210 9 1 3.9254 2.5633 4.2237 10 1 3.9221 4.8520 3.4210 11 1 1.8335 3.7719 4.0131 12 16 2.2929 -1.4341 -0.0006 13 8 1.4112 -2.4063 -0.5455 14 8 3.5759 -1.1566 -0.5450 15 7 2.5380 -1.8594 1.5809 16 6 3.7473 -1.4240 2.2937 17 6 3.3174 -0.6795 3.5691 18 7 2.3326 -1.5040 4.2832 19 16 2.5782 -1.9302 5.8646 20 6 4.1540 -1.2160 6.4098 21 7 2.6820 -3.4176 5.9499 22 8 1.4476 -1.5169 6.6196 23 6 1.1260 -1.9441 3.5688 24 6 1.5532 -2.6839 2.2950 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6502 2.0043 -0.5894 29 1 3.1858 1.1176 -0.4343 30 1 3.9669 4.4805 0.8473 31 1 4.3483 -2.2936 2.5595 32 1 4.3272 -0.7564 1.6564 33 1 2.8691 0.2778 3.3032 34 1 4.1856 -0.5123 4.2067 35 1 4.1054 -0.1296 6.3361 36 1 4.3440 -1.5018 7.4443 37 1 4.9597 -1.5873 5.7764 38 1 2.8278 -3.8452 6.8083 39 1 0.5216 -1.0768 3.3029 40 1 0.5482 -2.6145 4.2050 41 1 0.6837 -2.8486 1.6587 42 1 2.0006 -3.6424 2.5583 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424584721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:09 Heat of formation + Delta-G solvation = -72.577939 kcal Electronic energy + Delta-G solvation = -28348.482721 eV Core-core repulsion = 24425.363536 eV Total energy + Delta-G solvation = -3923.119184 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.52083 -38.35534 -37.26226 -37.14800 -36.86888 -34.78079 -34.43412 -32.91155 -32.61637 -30.06881 -29.58006 -27.43131 -26.69642 -24.97961 -24.21074 -22.42420 -20.51025 -19.43500 -18.68879 -18.54652 -18.18774 -17.71403 -17.39905 -17.30900 -16.91897 -16.39988 -15.81600 -15.50977 -15.43789 -15.21642 -15.04980 -14.84290 -14.26132 -14.08368 -14.00394 -13.93237 -13.79445 -13.55219 -13.36412 -13.06961 -13.01985 -12.97761 -12.84179 -12.64556 -12.53662 -12.47676 -12.34334 -12.22606 -11.97544 -11.72637 -11.49206 -10.81045 -10.51655 -10.47493 -9.98953 -9.74607 -9.55006 -8.10909 -6.23854 -1.02474 -0.30684 1.41551 1.49776 1.53910 1.58450 1.99519 2.44914 2.59521 2.90767 3.21376 3.24209 3.37493 3.44598 3.90883 3.97225 4.08355 4.13222 4.17825 4.20162 4.30931 4.36858 4.58860 4.61690 4.72056 4.75134 4.84568 4.91851 5.01611 5.09759 5.13786 5.27107 5.36238 5.40150 5.51336 5.62967 5.83405 5.99462 6.18614 6.51289 6.88863 7.45542 8.97369 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010327 B = 0.006704 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.571943 B = 4175.821673 C = 5987.168303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.003 6.003 3 C 0.257 3.743 4 C -0.535 4.535 5 H 0.086 0.914 6 C 0.018 3.982 7 N -0.929 5.929 8 Si 0.932 3.068 9 H -0.238 1.238 10 H -0.296 1.296 11 H -0.275 1.275 12 S 2.797 3.203 13 O -1.004 7.004 14 O -1.010 7.010 15 N -0.997 5.997 16 C 0.112 3.888 17 C 0.078 3.922 18 N -0.949 5.949 19 S 2.550 3.450 20 C -0.669 4.669 21 N -1.326 6.326 22 O -1.038 7.038 23 C 0.121 3.879 24 C 0.109 3.891 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.014 0.986 29 H 0.021 0.979 30 H 0.263 0.737 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.391 0.609 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.276 -9.812 9.894 13.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.844 5.844 3 C 0.134 3.866 4 C -0.574 4.574 5 H 0.104 0.896 6 C -0.181 4.181 7 N -0.569 5.569 8 Si 0.757 3.243 9 H -0.161 1.161 10 H -0.222 1.222 11 H -0.201 1.201 12 S 2.806 3.194 13 O -0.988 6.988 14 O -0.994 6.994 15 N -0.838 5.838 16 C -0.015 4.015 17 C -0.048 4.048 18 N -0.784 5.784 19 S 2.645 3.355 20 C -0.826 4.826 21 N -1.155 6.155 22 O -1.015 7.015 23 C -0.005 4.005 24 C -0.018 4.018 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.033 0.967 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.173 0.827 38 H 0.219 0.781 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.198 -10.223 8.857 13.528 hybrid contribution 0.643 1.449 1.475 2.166 sum 0.445 -8.774 10.333 13.563 Atomic orbital electron populations 1.21441 0.78212 1.03342 1.01708 1.57596 1.15518 1.22228 1.89055 1.18794 0.90803 0.79950 0.97077 1.21885 1.35521 1.06542 0.93405 0.89638 1.25696 0.95232 0.96843 1.00378 1.70060 1.37967 1.15665 1.33173 0.86008 0.78639 0.78513 0.81126 1.16090 1.22176 1.20092 1.01311 0.72241 0.72289 0.73534 1.93519 1.67399 1.60302 1.77574 1.93525 1.42514 1.85680 1.77675 1.57883 1.30007 1.64981 1.30881 1.21887 0.85833 1.00149 0.93611 1.22656 0.92423 0.94915 0.94799 1.55931 1.30403 1.65970 1.26141 1.07527 0.79749 0.75823 0.72423 1.30767 1.23122 1.14666 1.14069 1.71823 1.80446 1.21250 1.42023 1.93448 1.52281 1.86620 1.69125 1.21887 0.85062 0.99849 0.93726 1.21921 0.92355 0.94130 0.93345 0.92970 0.90330 0.90788 0.96750 0.96130 0.92773 0.88259 0.89046 0.89093 0.85916 0.85311 0.83318 0.82748 0.78106 0.90138 0.88001 0.87677 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.03 10.31 127.77 1.32 4.34 16 2 N -1.00 -37.98 3.23 -543.22 -1.75 -39.74 16 3 C 0.26 11.96 5.41 85.63 0.46 12.43 16 4 C -0.53 -24.53 8.78 25.60 0.22 -24.31 16 5 H 0.09 3.56 5.57 -2.91 -0.02 3.54 16 6 C 0.02 0.89 5.46 84.66 0.46 1.35 16 7 N -0.93 -50.23 13.29 21.45 0.28 -49.94 16 8 Si 0.93 36.81 29.54 68.60 2.03 38.84 16 9 H -0.24 -7.86 7.11 99.48 0.71 -7.15 16 10 H -0.30 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 12 S 2.80 102.23 6.07 -56.49 -0.34 101.89 16 13 O -1.00 -37.63 15.90 -128.00 -2.04 -39.66 16 14 O -1.01 -44.08 15.37 -128.00 -1.97 -46.04 16 15 N -1.00 -28.84 3.32 -511.44 -1.70 -30.54 16 16 C 0.11 2.93 6.58 86.56 0.57 3.50 16 17 C 0.08 1.85 6.66 86.57 0.58 2.42 16 18 N -0.95 -21.69 3.32 -511.42 -1.70 -23.39 16 19 S 2.55 54.25 5.32 -56.49 -0.30 53.95 16 20 C -0.67 -8.30 9.24 113.37 1.05 -7.25 16 21 N -1.33 -30.38 14.07 37.02 0.52 -29.86 16 22 O -1.04 -32.28 18.13 -148.98 -2.70 -34.99 16 23 C 0.12 2.80 6.71 86.41 0.58 3.38 16 24 C 0.11 2.57 6.55 86.42 0.57 3.13 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.08 1.98 7.79 -2.39 -0.02 1.96 16 27 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 28 H 0.01 0.73 8.11 -2.39 -0.02 0.71 16 29 H 0.02 1.08 6.91 -2.39 -0.02 1.07 16 30 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 31 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.09 2.80 7.08 -2.39 -0.02 2.78 16 33 H 0.09 2.65 5.07 -2.39 -0.01 2.63 16 34 H 0.12 1.92 5.57 -2.38 -0.01 1.91 16 35 H 0.13 1.49 7.96 -2.39 -0.02 1.47 16 36 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.15 1.27 7.66 -2.39 -0.02 1.25 16 38 H 0.39 7.96 8.92 -104.95 -0.94 7.02 16 39 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.10 2.17 7.91 -2.38 -0.02 2.15 16 41 H 0.11 2.30 7.09 -2.39 -0.02 2.29 16 42 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -73.00 357.31 -3.74 -76.74 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.11 Total: 23.75 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 5.81 Total: -0.99 kcal Atomic # 7 Polarization: -169.13 SS G_CDS: -4.34 Total: -173.47 kcal Atomic # 8 Polarization: -113.99 SS G_CDS: -6.70 Total: -120.69 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Atomic # 16 Polarization: 156.47 SS G_CDS: -0.64 Total: 155.83 kcal Total: -73.00 -3.74 -76.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424584721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.163 kcal (2) G-P(sol) polarization free energy of solvation -72.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds