Wall clock time and date at job start Sat Apr 11 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35981 * 116.99704 * 2 1 4 4 N 1.30318 * 121.66614 * 0.02863 * 3 2 1 5 5 S 1.69567 * 107.27579 * 180.02562 * 4 3 2 6 6 C 1.72006 * 95.85428 * 359.97438 * 5 4 3 7 7 C 1.35362 * 105.61956 * 359.74551 * 6 5 4 8 8 N 1.40962 * 122.71330 * 180.21102 * 7 6 5 9 9 C 1.34779 * 119.99474 * 354.95376 * 8 7 6 10 10 O 1.21606 * 120.00625 * 5.33490 * 9 8 7 11 11 N 1.34784 * 119.99686 * 185.32652 * 9 8 7 12 12 C 1.46966 * 120.59438 * 5.10047 * 11 9 8 13 13 C 1.53815 * 108.39652 * 124.75247 * 12 11 9 14 14 N 1.46966 * 108.57542 * 49.64252 * 13 12 11 15 15 C 1.34779 * 120.59577 * 124.62583 * 14 13 12 16 16 O 1.21683 * 119.99739 * 174.93037 * 15 14 13 17 17 C 1.46371 * 119.99637 * 354.92490 * 15 14 13 18 18 H 1.07998 * 120.00170 * 5.12092 * 17 15 14 19 19 C 1.40045 * 119.99737 * 185.11740 * 17 15 14 20 20 N 1.30669 * 120.00215 * 0.02562 * 19 17 15 21 21 Si 1.86805 * 120.00214 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47027 * 89.99831 * 21 19 17 23 23 H 1.48497 * 109.47156 * 210.00051 * 21 19 17 24 24 H 1.48502 * 109.46650 * 330.00285 * 21 19 17 25 25 C 1.46973 * 118.81106 * 304.63824 * 14 13 12 26 26 C 1.46966 * 120.59454 * 185.37755 * 11 9 8 27 27 H 1.09001 * 109.47364 * 60.00214 * 1 2 3 28 28 H 1.09003 * 109.46796 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47198 * 299.99590 * 1 2 3 30 30 H 1.08004 * 127.19094 * 179.97438 * 6 5 4 31 31 H 0.96998 * 120.00630 * 174.95838 * 8 7 6 32 32 H 1.08997 * 109.60890 * 244.53773 * 12 11 9 33 33 H 1.09005 * 109.60706 * 5.05526 * 12 11 9 34 34 H 1.08999 * 109.74326 * 289.85208 * 13 12 11 35 35 H 1.08997 * 109.53043 * 169.30249 * 13 12 11 36 36 H 0.97003 * 120.00647 * 180.02562 * 20 19 17 37 37 H 1.08993 * 109.61021 * 295.48826 * 25 14 13 38 38 H 1.09002 * 109.74620 * 175.05583 * 25 14 13 39 39 H 1.09007 * 109.60981 * 354.95534 * 26 11 9 40 40 H 1.08998 * 109.60793 * 115.28423 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 7 1.3686 2.3247 0.0006 5 16 2.4897 3.5969 -0.0004 6 6 3.8894 2.5972 -0.0008 7 6 3.4284 1.3246 0.0056 8 7 4.2840 0.2044 0.0118 9 6 5.6171 0.3742 -0.0913 10 8 6.0892 1.4949 -0.0918 11 7 6.4271 -0.6982 -0.1936 12 6 5.8656 -2.0517 -0.3064 13 6 6.4366 -2.7101 -1.5738 14 7 7.8972 -2.5475 -1.5684 15 6 8.7072 -3.6199 -1.6699 16 8 9.9112 -3.4668 -1.7572 17 6 8.1385 -4.9686 -1.6750 18 1 7.0669 -5.1028 -1.6809 19 6 8.9841 -6.0850 -1.6722 20 7 10.2806 -5.9227 -1.6646 21 14 8.2584 -7.8064 -1.6794 22 1 8.0740 -8.2599 -3.0815 23 1 9.1794 -8.7348 -0.9759 24 1 6.9449 -7.7926 -0.9868 25 6 8.4588 -1.1945 -1.4500 26 6 7.8877 -0.5356 -0.1882 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.9207 2.9180 -0.0018 31 1 3.9135 -0.6886 0.0900 32 1 6.1432 -2.6371 0.5701 33 1 4.7797 -1.9922 -0.3808 34 1 6.0183 -2.2300 -2.4585 35 1 6.1867 -3.7710 -1.5775 36 1 10.8663 -6.6959 -1.6631 37 1 8.1845 -0.6066 -2.3258 38 1 9.5446 -1.2518 -1.3732 39 1 8.1377 0.5254 -0.1844 40 1 8.3057 -1.0129 0.6981 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001426199895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:12 Heat of formation + Delta-G solvation = -19.175365 kcal Electronic energy + Delta-G solvation = -27289.088335 eV Core-core repulsion = 23232.840908 eV Total energy + Delta-G solvation = -4056.247426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18210 -40.01684 -38.30846 -37.04678 -35.91935 -34.60867 -33.13881 -32.55783 -31.15890 -30.04882 -28.27592 -27.40477 -26.08726 -24.44877 -23.34732 -22.37338 -20.98658 -20.08166 -19.86321 -18.71083 -17.85748 -17.48892 -16.63339 -16.38713 -16.18123 -15.72354 -15.51396 -15.27890 -14.85767 -14.54226 -14.29080 -14.15288 -14.05786 -13.93051 -13.69767 -13.20828 -12.71122 -12.37389 -12.05006 -11.77080 -11.54739 -11.52203 -11.43472 -11.24196 -11.19620 -11.13389 -11.03370 -11.02428 -10.76655 -10.32368 -10.16278 -9.94378 -9.41183 -8.98184 -8.80119 -7.97413 -7.71081 -7.32458 -6.30404 -4.76694 0.54419 1.17411 1.47971 2.10108 2.48811 2.78126 3.06674 3.13887 3.15067 3.16378 3.65126 3.98924 4.36215 4.45069 4.46582 4.83007 4.92493 5.01029 5.07518 5.21709 5.23987 5.38196 5.49748 5.53488 5.59027 5.76241 5.80022 5.88033 5.99064 6.18506 6.20926 6.28334 6.45940 6.52860 6.73591 6.82580 7.34092 7.42576 7.71826 7.98391 8.20062 8.36047 8.91062 9.28231 10.45412 10.63870 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.002666 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.142856 B =10498.874751 C =11818.214739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.298 6.298 3 C 0.300 3.700 4 N -0.522 5.522 5 S 0.287 5.713 6 C -0.215 4.215 7 C 0.087 3.913 8 N -0.658 5.658 9 C 0.710 3.290 10 O -0.579 6.579 11 N -0.613 5.613 12 C 0.091 3.909 13 C 0.110 3.890 14 N -0.642 5.642 15 C 0.559 3.441 16 O -0.574 6.574 17 C -0.545 4.545 18 H 0.073 0.927 19 C 0.088 3.912 20 N -0.766 5.766 21 Si 0.907 3.093 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.264 1.264 25 C 0.107 3.893 26 C 0.116 3.884 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.224 0.776 31 H 0.414 0.586 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.108 0.892 36 H 0.270 0.730 37 H 0.047 0.953 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.109 11.820 4.597 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.204 6.204 3 C 0.081 3.919 4 N -0.361 5.361 5 S 0.433 5.567 6 C -0.366 4.366 7 C -0.025 4.025 8 N -0.307 5.307 9 C 0.412 3.588 10 O -0.459 6.459 11 N -0.349 5.349 12 C -0.033 4.033 13 C -0.015 4.015 14 N -0.381 5.381 15 C 0.365 3.635 16 O -0.456 6.456 17 C -0.582 4.582 18 H 0.091 0.909 19 C -0.132 4.132 20 N -0.394 5.394 21 Si 0.732 3.268 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.188 1.188 25 C -0.018 4.018 26 C -0.007 4.007 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.079 0.921 30 H 0.240 0.760 31 H 0.253 0.747 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.126 0.874 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.127 13.837 4.527 23.250 hybrid contribution 0.079 -2.865 0.032 2.866 sum -18.048 10.972 4.559 21.608 Atomic orbital electron populations 1.22984 0.76303 1.03703 1.02603 1.86224 1.23346 1.22385 1.88459 1.19674 0.88579 0.85976 0.97677 1.76460 1.26548 1.01002 1.32053 1.83904 0.89987 1.11991 1.70793 1.27119 1.07821 0.94995 1.06658 1.16818 0.86441 0.88493 1.10735 1.42456 1.04496 1.08027 1.75768 1.15670 0.80215 0.84849 0.78027 1.90681 1.74223 1.22258 1.58698 1.47278 1.06951 1.05204 1.75424 1.22381 0.97061 0.82648 1.01219 1.21860 0.83090 1.02252 0.94323 1.48185 1.04678 1.05558 1.79680 1.18290 0.85422 0.83609 0.76159 1.90604 1.14870 1.85313 1.54848 1.20931 0.93628 0.89025 1.54576 0.90881 1.25726 0.94429 1.00543 0.92538 1.69999 1.03368 1.31235 1.34819 0.86382 0.79609 0.81939 0.78918 1.19687 1.20423 1.18841 1.21525 1.00445 0.84806 0.94989 1.22073 0.76703 1.02354 0.99577 0.92053 0.87887 0.92092 0.76025 0.74749 0.90166 0.90711 0.93404 0.87428 0.91941 0.93430 0.88426 0.88601 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.47 101.05 1.06 1.34 16 2 O -0.30 -3.06 10.13 -19.68 -0.20 -3.26 16 3 C 0.30 3.52 7.44 -18.04 -0.13 3.39 16 4 N -0.52 -6.08 11.13 29.07 0.32 -5.75 16 5 S 0.29 2.90 23.70 -107.50 -2.55 0.36 16 6 C -0.22 -2.59 10.09 29.71 0.30 -2.29 16 7 C 0.09 1.08 6.62 -84.52 -0.56 0.53 16 8 N -0.66 -8.13 5.33 -14.88 -0.08 -8.21 16 9 C 0.71 10.38 8.26 -86.91 -0.72 9.66 16 10 O -0.58 -9.54 12.58 5.27 0.07 -9.47 16 11 N -0.61 -8.92 2.94 -177.93 -0.52 -9.44 16 12 C 0.09 1.20 6.55 -3.36 -0.02 1.18 16 13 C 0.11 1.82 6.52 -3.36 -0.02 1.80 16 14 N -0.64 -13.54 2.95 -173.87 -0.51 -14.05 16 15 C 0.56 14.97 7.62 -12.99 -0.10 14.87 16 16 O -0.57 -17.77 14.47 5.20 0.08 -17.69 16 17 C -0.55 -14.26 8.88 -35.63 -0.32 -14.57 16 18 H 0.07 1.70 5.63 -52.49 -0.30 1.40 16 19 C 0.09 2.32 5.50 -17.37 -0.10 2.22 16 20 N -0.77 -22.02 11.84 55.55 0.66 -21.36 16 21 Si 0.91 18.98 29.56 -169.99 -5.02 13.95 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 25 C 0.11 2.00 6.58 -3.59 -0.02 1.98 16 26 C 0.12 1.83 6.60 -3.60 -0.02 1.81 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.22 2.89 5.51 -52.48 -0.29 2.60 16 31 H 0.41 4.33 5.99 -40.82 -0.24 4.08 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.75 5.70 -51.93 -0.30 0.45 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.11 1.81 5.29 -51.93 -0.27 1.53 16 36 H 0.27 7.05 8.29 -40.82 -0.34 6.71 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 2.01 7.03 -51.93 -0.36 1.64 16 39 H 0.10 1.44 6.99 -51.93 -0.36 1.08 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -34.12 344.49 -7.45 -41.57 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -4.22 Total: 6.26 kcal Atomic # 6 Polarization: 22.56 SS G_CDS: -0.66 Total: 21.91 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.13 Total: -58.81 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.06 Total: -30.43 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.95 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.55 Total: 0.36 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.12 -7.45 -41.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001426199895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.394 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds