Wall clock time and date at job start Sat Apr 11 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36006 * 116.99932 * 2 1 4 4 C 1.38538 * 120.06908 * 0.02562 * 3 2 1 5 5 C 1.38248 * 120.02395 * 179.97438 * 4 3 2 6 6 C 1.38372 * 120.16409 * 359.97438 * 5 4 3 7 7 Cl 1.73603 * 119.92989 * 180.02562 * 6 5 4 8 8 C 1.38298 * 120.13452 * 0.02562 * 6 5 4 9 9 C 1.38699 * 119.97689 * 0.25542 * 8 6 5 10 10 N 1.40161 * 120.08342 * 179.72464 * 9 8 6 11 11 C 1.34780 * 119.99914 * 325.36168 * 10 9 8 12 12 O 1.21590 * 119.99857 * 4.47042 * 11 10 9 13 13 N 1.34781 * 119.99859 * 184.46624 * 11 10 9 14 14 C 1.47415 * 125.65036 * 359.68967 * 13 11 10 15 15 C 1.55125 * 104.72264 * 155.81871 * 14 13 11 16 16 C 1.55159 * 101.48730 * 37.29706 * 15 14 13 17 17 O 1.42907 * 110.71750 * 82.69173 * 16 15 14 18 18 C 1.50696 * 110.87700 * 205.89734 * 16 15 14 19 19 H 1.08006 * 119.99767 * 355.06578 * 18 16 15 20 20 C 1.37877 * 120.00246 * 175.06534 * 18 16 15 21 21 N 1.31517 * 119.99613 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 120.00036 * 180.02562 * 20 18 16 23 23 H 1.48490 * 109.47339 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47062 * 120.00120 * 22 20 18 25 25 H 1.48500 * 109.46815 * 239.99631 * 22 20 18 26 26 C 1.47023 * 125.64461 * 180.02562 * 13 11 10 27 27 H 1.09003 * 109.47096 * 59.99175 * 1 2 3 28 28 H 1.08999 * 109.47421 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47016 * 299.99934 * 1 2 3 30 30 H 1.08004 * 119.98670 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.91455 * 179.97438 * 5 4 3 32 32 H 1.08001 * 120.01257 * 179.97438 * 8 6 5 33 33 H 0.97005 * 120.00408 * 145.36961 * 10 9 8 34 34 H 1.09000 * 110.37473 * 274.75286 * 14 13 11 35 35 H 1.09008 * 110.36594 * 37.07493 * 14 13 11 36 36 H 1.09002 * 111.20017 * 279.19449 * 15 14 13 37 37 H 1.09003 * 110.91200 * 155.27784 * 15 14 13 38 38 H 0.96699 * 113.99904 * 185.02747 * 17 16 15 39 39 H 0.97003 * 119.99537 * 179.97438 * 21 20 18 40 40 H 1.09000 * 109.87952 * 300.43387 * 26 13 11 41 41 H 1.08997 * 109.88829 * 61.44694 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2933 2.3746 0.0005 5 6 1.9219 3.6059 0.0011 6 6 3.3036 3.6812 0.0016 7 17 4.0866 5.2306 0.0030 8 6 4.0619 2.5247 0.0011 9 6 3.4372 1.2864 -0.0054 10 7 4.2036 0.1129 -0.0117 11 6 5.3761 0.0773 -0.6756 12 8 5.8083 1.0853 -1.2005 13 7 6.0693 -1.0756 -0.7577 14 6 5.6669 -2.3641 -0.1653 15 6 6.3934 -3.4352 -1.0205 16 6 7.7517 -2.7390 -1.2992 17 8 8.6457 -2.9160 -0.1984 18 6 8.3687 -3.2558 -2.5731 19 1 7.9002 -4.0679 -3.1093 20 6 9.5314 -2.6921 -3.0543 21 7 10.1016 -1.7029 -2.4016 22 14 10.2958 -3.3323 -4.6339 23 1 9.4663 -4.4404 -5.1715 24 1 10.3630 -2.2346 -5.6317 25 1 11.6661 -3.8313 -4.3538 26 6 7.3555 -1.2548 -1.4469 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2147 2.3191 0.0014 31 1 1.3330 4.5113 0.0011 32 1 5.1402 2.5858 0.0011 33 1 3.8903 -0.6738 0.4616 34 1 5.9906 -2.4216 0.8740 35 1 4.5867 -2.4927 -0.2346 36 1 5.8562 -3.6292 -1.9489 37 1 6.5351 -4.3553 -0.4535 38 1 9.4804 -2.4361 -0.2886 39 1 10.9197 -1.3065 -2.7399 40 1 7.2488 -1.0031 -2.5021 41 1 8.1133 -0.6189 -0.9891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434674649.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:15 Heat of formation + Delta-G solvation = -83.203971 kcal Electronic energy + Delta-G solvation = -27424.735745 eV Core-core repulsion = 23331.375372 eV Total energy + Delta-G solvation = -4093.360373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.84443 -39.55998 -37.95616 -37.34266 -36.19271 -34.49341 -34.29510 -32.24169 -30.66077 -30.07615 -29.32013 -27.80425 -27.39380 -25.17491 -23.32991 -22.46894 -22.15478 -19.77504 -19.54981 -18.65416 -17.76556 -17.12904 -17.05473 -16.37250 -15.97068 -15.56621 -15.37646 -14.96052 -14.57731 -14.45948 -14.16323 -14.06545 -13.52056 -13.24384 -12.96155 -12.89019 -12.64997 -12.32105 -12.20132 -12.09389 -11.72006 -11.58413 -11.52622 -11.07551 -10.98093 -10.90105 -10.82155 -10.70507 -10.47455 -10.30106 -10.15680 -9.66213 -9.34933 -8.69923 -8.67270 -8.34910 -8.09460 -7.71376 -6.29728 -4.38275 1.06602 1.12515 2.12073 2.82202 3.02848 3.20562 3.29380 3.32467 3.32817 3.72002 4.20880 4.29003 4.55405 4.69248 4.87227 4.89414 4.98009 5.06600 5.19810 5.26978 5.31783 5.56604 5.64397 5.70195 5.77212 5.94145 5.95918 6.04943 6.13333 6.33888 6.46321 6.65747 6.69561 6.83889 6.89149 7.15119 7.17575 7.27407 7.49628 7.71929 8.00924 8.32223 8.65365 8.90563 9.27416 9.36491 10.78173 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014296 B = 0.003012 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.132176 B = 9292.697423 C =10505.954067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.314 6.314 3 C 0.098 3.902 4 C -0.179 4.179 5 C -0.096 4.096 6 C -0.049 4.049 7 Cl -0.070 7.070 8 C -0.080 4.080 9 C 0.165 3.835 10 N -0.681 5.681 11 C 0.713 3.287 12 O -0.579 6.579 13 N -0.622 5.622 14 C 0.098 3.902 15 C -0.115 4.115 16 C 0.248 3.752 17 O -0.585 6.585 18 C -0.537 4.537 19 H 0.067 0.933 20 C 0.071 3.929 21 N -0.893 5.893 22 Si 0.903 3.097 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.122 3.878 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.162 0.838 33 H 0.409 0.591 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.383 0.617 39 H 0.270 0.730 40 H 0.067 0.933 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.957 5.993 7.153 21.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.051 3.949 4 C -0.199 4.199 5 C -0.115 4.115 6 C -0.076 4.076 7 Cl -0.041 7.041 8 C -0.101 4.101 9 C 0.067 3.933 10 N -0.329 5.329 11 C 0.416 3.584 12 O -0.457 6.457 13 N -0.358 5.358 14 C -0.025 4.025 15 C -0.153 4.153 16 C 0.208 3.792 17 O -0.393 6.393 18 C -0.576 4.576 19 H 0.085 0.915 20 C -0.133 4.133 21 N -0.532 5.532 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.207 1.207 26 C 0.000 4.000 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.179 0.821 33 H 0.246 0.754 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.233 0.767 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.765 6.390 6.944 21.004 hybrid contribution 0.530 0.020 -0.878 1.026 sum -18.235 6.410 6.066 20.258 Atomic orbital electron populations 1.23071 0.78130 1.04105 1.01344 1.86070 1.21529 1.26156 1.88974 1.18811 0.90408 0.85147 1.00576 1.20899 0.99944 0.90970 1.08080 1.20729 0.92262 0.97911 1.00641 1.20582 0.92439 0.86724 1.07882 1.98360 1.81121 1.27545 1.97102 1.21168 1.02329 0.88394 0.98211 1.16631 0.86232 0.86632 1.03762 1.42534 1.21473 1.13740 1.55197 1.15490 0.79765 0.83567 0.79569 1.90893 1.69551 1.32680 1.52569 1.48004 1.24574 1.07099 1.56164 1.22376 0.98081 0.84166 0.97858 1.22758 0.96492 0.96984 0.99043 1.19516 0.86045 0.87881 0.85801 1.86108 1.32229 1.75321 1.45687 1.21517 1.09233 1.19104 1.07719 0.91459 1.25074 0.96551 0.94090 0.97548 1.69704 1.19925 1.23824 1.39709 0.86347 0.79064 0.78899 0.82603 1.19598 1.20746 1.20737 1.22962 0.80350 1.00567 0.96103 0.92547 0.88104 0.92590 0.84364 0.84802 0.82067 0.75433 0.91640 0.92290 0.90375 0.90460 0.76710 0.92010 0.91502 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.45 10.05 -19.76 -0.20 -3.65 16 3 C 0.10 1.22 6.70 -39.08 -0.26 0.95 16 4 C -0.18 -1.81 9.04 -39.47 -0.36 -2.16 16 5 C -0.10 -1.02 9.82 -39.53 -0.39 -1.41 16 6 C -0.05 -0.65 6.32 -39.51 -0.25 -0.90 16 7 Cl -0.07 -0.89 28.95 -51.86 -1.50 -2.39 16 8 C -0.08 -1.25 8.48 -39.39 -0.33 -1.58 16 9 C 0.16 2.48 6.32 -83.49 -0.53 1.95 16 10 N -0.68 -10.83 5.15 -14.11 -0.07 -10.90 16 11 C 0.71 14.29 8.34 -86.91 -0.72 13.57 16 12 O -0.58 -13.46 14.09 5.29 0.07 -13.38 16 13 N -0.62 -12.62 3.32 -176.10 -0.59 -13.21 16 14 C 0.10 1.67 6.54 -2.42 -0.02 1.65 16 15 C -0.11 -2.21 6.24 -24.46 -0.15 -2.37 16 16 C 0.25 5.86 0.85 -89.94 -0.08 5.78 16 17 O -0.58 -14.33 13.07 -35.23 -0.46 -14.79 16 18 C -0.54 -13.85 8.13 -34.44 -0.28 -14.13 16 19 H 0.07 1.71 7.78 -52.48 -0.41 1.30 16 20 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 21 N -0.89 -23.59 10.96 55.43 0.61 -22.98 16 22 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 C 0.12 2.91 5.23 -3.06 -0.02 2.89 16 27 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 30 H 0.14 0.95 6.30 -52.48 -0.33 0.62 16 31 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.16 2.91 6.19 -52.49 -0.32 2.59 16 33 H 0.41 5.54 7.08 -40.82 -0.29 5.25 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.81 7.36 -51.92 -0.38 0.43 16 36 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 37 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.38 9.64 7.45 45.56 0.34 9.98 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.07 1.76 7.81 -51.93 -0.41 1.35 16 41 H 0.07 1.72 7.92 -51.93 -0.41 1.31 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -29.89 355.61 -8.54 -38.43 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -4.25 Total: 15.01 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -2.49 Total: 7.17 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.05 Total: -47.09 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.58 Total: -31.83 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.89 -8.54 -38.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434674649.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.773 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds