Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36006 * 116.99932 * 2 1 4 4 C 1.38538 * 120.06908 * 0.02562 * 3 2 1 5 5 C 1.38248 * 120.02395 * 179.97438 * 4 3 2 6 6 C 1.38372 * 120.16409 * 359.97438 * 5 4 3 7 7 Cl 1.73603 * 119.92989 * 180.02562 * 6 5 4 8 8 C 1.38298 * 120.13452 * 0.02562 * 6 5 4 9 9 C 1.38699 * 119.97689 * 0.25542 * 8 6 5 10 10 N 1.40161 * 120.08342 * 179.72464 * 9 8 6 11 11 C 1.34780 * 119.99914 * 325.36168 * 10 9 8 12 12 O 1.21590 * 119.99857 * 4.47042 * 11 10 9 13 13 N 1.34781 * 119.99859 * 184.46624 * 11 10 9 14 14 C 1.47415 * 125.65036 * 359.68967 * 13 11 10 15 15 C 1.55125 * 104.72264 * 155.81871 * 14 13 11 16 16 C 1.55159 * 101.48730 * 37.29706 * 15 14 13 17 17 O 1.42907 * 110.71750 * 82.69173 * 16 15 14 18 18 C 1.50696 * 110.87700 * 205.89734 * 16 15 14 19 19 H 1.08006 * 119.99767 * 355.06578 * 18 16 15 20 20 C 1.37877 * 120.00246 * 175.06534 * 18 16 15 21 21 N 1.31517 * 119.99613 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 120.00036 * 180.02562 * 20 18 16 23 23 H 1.48490 * 109.47339 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47062 * 120.00120 * 22 20 18 25 25 H 1.48500 * 109.46815 * 239.99631 * 22 20 18 26 26 C 1.47023 * 125.64461 * 180.02562 * 13 11 10 27 27 H 1.09003 * 109.47096 * 59.99175 * 1 2 3 28 28 H 1.08999 * 109.47421 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47016 * 299.99934 * 1 2 3 30 30 H 1.08004 * 119.98670 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.91455 * 179.97438 * 5 4 3 32 32 H 1.08001 * 120.01257 * 179.97438 * 8 6 5 33 33 H 0.97005 * 120.00408 * 145.36961 * 10 9 8 34 34 H 1.09000 * 110.37473 * 274.75286 * 14 13 11 35 35 H 1.09008 * 110.36594 * 37.07493 * 14 13 11 36 36 H 1.09002 * 111.20017 * 279.19449 * 15 14 13 37 37 H 1.09003 * 110.91200 * 155.27784 * 15 14 13 38 38 H 0.96699 * 113.99904 * 185.02747 * 17 16 15 39 39 H 0.97003 * 119.99537 * 179.97438 * 21 20 18 40 40 H 1.09000 * 109.87952 * 300.43387 * 26 13 11 41 41 H 1.08997 * 109.88829 * 61.44694 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2933 2.3746 0.0005 5 6 1.9219 3.6059 0.0011 6 6 3.3036 3.6812 0.0016 7 17 4.0866 5.2306 0.0030 8 6 4.0619 2.5247 0.0011 9 6 3.4372 1.2864 -0.0054 10 7 4.2036 0.1129 -0.0117 11 6 5.3761 0.0773 -0.6756 12 8 5.8083 1.0853 -1.2005 13 7 6.0693 -1.0756 -0.7577 14 6 5.6669 -2.3641 -0.1653 15 6 6.3934 -3.4352 -1.0205 16 6 7.7517 -2.7390 -1.2992 17 8 8.6457 -2.9160 -0.1984 18 6 8.3687 -3.2558 -2.5731 19 1 7.9002 -4.0679 -3.1093 20 6 9.5314 -2.6921 -3.0543 21 7 10.1016 -1.7029 -2.4016 22 14 10.2958 -3.3323 -4.6339 23 1 9.4663 -4.4404 -5.1715 24 1 10.3630 -2.2346 -5.6317 25 1 11.6661 -3.8313 -4.3538 26 6 7.3555 -1.2548 -1.4469 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2147 2.3191 0.0014 31 1 1.3330 4.5113 0.0011 32 1 5.1402 2.5858 0.0011 33 1 3.8903 -0.6738 0.4616 34 1 5.9906 -2.4216 0.8740 35 1 4.5867 -2.4927 -0.2346 36 1 5.8562 -3.6292 -1.9489 37 1 6.5351 -4.3553 -0.4535 38 1 9.4804 -2.4361 -0.2886 39 1 10.9197 -1.3065 -2.7399 40 1 7.2488 -1.0031 -2.5021 41 1 8.1133 -0.6189 -0.9891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434674649.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = -104.279913 kcal Electronic energy + Delta-G solvation = -27425.649666 eV Core-core repulsion = 23331.375372 eV Total energy + Delta-G solvation = -4094.274294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.02685 -40.83960 -39.32467 -38.53101 -37.22688 -36.15365 -35.71580 -34.23475 -32.08860 -31.12739 -30.49937 -29.50806 -28.06653 -27.00560 -24.75618 -23.61428 -23.22340 -21.48619 -21.04883 -19.79683 -19.10874 -18.84380 -18.26823 -17.43118 -17.20090 -16.80342 -16.62667 -16.52434 -16.21205 -15.82369 -15.26651 -15.16226 -14.79714 -14.77496 -14.63243 -14.33221 -13.90078 -13.52173 -13.44884 -13.37190 -13.21700 -12.88070 -12.86476 -12.54604 -12.36301 -12.30503 -12.25120 -12.10577 -11.94828 -11.79553 -11.42461 -11.20239 -11.16215 -10.66787 -10.30506 -9.83128 -9.54179 -8.85657 -8.26983 -6.42665 0.08734 0.14475 1.12795 1.38935 1.43219 1.47198 1.54083 1.94580 2.23279 2.37470 2.58969 2.86948 3.00091 3.73278 3.77089 3.90342 4.00354 4.09216 4.15108 4.24666 4.36683 4.44325 4.48932 4.55779 4.64219 4.68841 4.73021 4.83104 5.02792 5.06956 5.10719 5.17919 5.20190 5.29225 5.33959 5.47929 5.58304 5.73785 5.94601 6.08549 6.31891 6.64038 6.86097 7.26837 7.34457 7.37740 8.79301 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014296 B = 0.003012 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.132176 B = 9292.697423 C =10505.954067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.109 3.891 4 C -0.166 4.166 5 C -0.080 4.080 6 C -0.064 4.064 7 Cl -0.073 7.073 8 C -0.101 4.101 9 C 0.128 3.872 10 N -0.663 5.663 11 C 0.710 3.290 12 O -0.621 6.621 13 N -0.628 5.628 14 C 0.103 3.897 15 C -0.109 4.109 16 C 0.234 3.766 17 O -0.586 6.586 18 C -0.556 4.556 19 H 0.068 0.932 20 C 0.026 3.974 21 N -0.915 5.915 22 Si 0.963 3.037 23 H -0.264 1.264 24 H -0.285 1.285 25 H -0.277 1.277 26 C 0.142 3.858 27 H 0.068 0.932 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.182 0.818 31 H 0.167 0.833 32 H 0.125 0.875 33 H 0.421 0.579 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.375 0.625 39 H 0.269 0.731 40 H 0.031 0.969 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.731 5.281 7.550 24.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.061 3.939 4 C -0.185 4.185 5 C -0.099 4.099 6 C -0.091 4.091 7 Cl -0.044 7.044 8 C -0.122 4.122 9 C 0.032 3.968 10 N -0.312 5.312 11 C 0.413 3.587 12 O -0.501 6.501 13 N -0.364 5.364 14 C -0.018 4.018 15 C -0.146 4.146 16 C 0.193 3.807 17 O -0.394 6.394 18 C -0.594 4.594 19 H 0.086 0.914 20 C -0.175 4.175 21 N -0.555 5.555 22 Si 0.788 3.212 23 H -0.188 1.188 24 H -0.211 1.211 25 H -0.203 1.203 26 C 0.019 3.981 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.094 0.906 30 H 0.199 0.801 31 H 0.184 0.816 32 H 0.143 0.857 33 H 0.260 0.740 34 H 0.094 0.906 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.224 0.776 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -22.612 5.652 7.380 24.448 hybrid contribution 1.565 0.288 -0.972 1.865 sum -21.047 5.940 6.409 22.789 Atomic orbital electron populations 1.23457 0.75524 1.05950 1.02867 1.86063 1.24149 1.25434 1.88523 1.18824 0.89323 0.86627 0.99125 1.21364 1.01817 0.89562 1.05796 1.21138 0.91047 0.99656 0.98043 1.20709 0.93557 0.85908 1.08960 1.98352 1.81510 1.27399 1.97169 1.20938 1.00931 0.90083 1.00250 1.16845 0.87608 0.85785 1.06516 1.42192 1.19999 1.14739 1.54293 1.15654 0.80685 0.82784 0.79589 1.90867 1.70835 1.34122 1.54326 1.47910 1.23574 1.08583 1.56330 1.22534 1.00330 0.81470 0.97514 1.22750 0.93877 0.97899 1.00118 1.19717 0.87739 0.88034 0.85179 1.86098 1.32040 1.75145 1.46090 1.21856 1.09627 1.19187 1.08763 0.91375 1.25813 0.97155 0.94273 1.00282 1.69814 1.20116 1.24625 1.40899 0.85430 0.78362 0.78285 0.79116 1.18771 1.21120 1.20294 1.22416 0.81443 1.00344 0.93914 0.91359 0.86367 0.90562 0.80125 0.81572 0.85720 0.74011 0.90632 0.88095 0.89753 0.88864 0.77569 0.92122 0.95048 0.95092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.25 16 2 O -0.33 -6.08 10.05 -93.62 -0.94 -7.03 16 3 C 0.11 2.41 6.70 22.59 0.15 2.56 16 4 C -0.17 -2.67 9.04 22.34 0.20 -2.46 16 5 C -0.08 -1.45 9.82 22.30 0.22 -1.24 16 6 C -0.06 -1.66 6.32 22.32 0.14 -1.52 16 7 Cl -0.07 -1.86 28.95 -2.72 -0.08 -1.94 16 8 C -0.10 -3.25 8.48 22.39 0.19 -3.06 16 9 C 0.13 3.83 6.32 38.17 0.24 4.07 16 10 N -0.66 -20.98 5.15 -316.81 -1.63 -22.61 16 11 C 0.71 29.43 8.34 179.05 1.49 30.92 16 12 O -0.62 -30.76 14.09 -4.00 -0.06 -30.82 16 13 N -0.63 -26.02 3.32 -829.32 -2.76 -28.77 16 14 C 0.10 3.34 6.54 86.93 0.57 3.91 16 15 C -0.11 -4.06 6.24 32.06 0.20 -3.86 16 16 C 0.23 11.26 0.85 -10.35 -0.01 11.25 16 17 O -0.59 -29.37 13.07 -148.98 -1.95 -31.32 16 18 C -0.56 -29.15 8.13 25.60 0.21 -28.94 16 19 H 0.07 3.47 7.78 -2.91 -0.02 3.45 16 20 C 0.03 1.36 5.28 84.65 0.45 1.80 16 21 N -0.92 -50.26 10.96 21.45 0.24 -50.02 16 22 Si 0.96 42.34 29.54 68.60 2.03 44.37 16 23 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 24 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 26 C 0.14 7.15 5.23 86.73 0.45 7.61 16 27 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 28 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 0.36 7.66 -2.39 -0.02 0.34 16 30 H 0.18 1.36 6.30 -2.91 -0.02 1.34 16 31 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 32 H 0.12 4.92 6.19 -2.91 -0.02 4.91 16 33 H 0.42 10.78 7.08 -92.70 -0.66 10.12 16 34 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.10 2.45 7.36 -2.38 -0.02 2.43 16 36 H 0.08 3.03 8.04 -2.39 -0.02 3.01 16 37 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.38 19.75 7.45 -74.06 -0.55 19.20 16 39 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 40 H 0.03 1.75 7.81 -2.39 -0.02 1.74 16 41 H 0.03 1.73 7.92 -2.39 -0.02 1.71 16 Total: -1.00 -69.72 355.61 0.36 -69.36 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: -0.11 Total: 36.50 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 5.62 Total: 22.29 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -4.15 Total: -101.41 kcal Atomic # 8 Polarization: -66.22 SS G_CDS: -2.94 Total: -69.16 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -0.08 Total: -1.94 kcal Total: -69.72 0.36 -69.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434674649.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.922 kcal (2) G-P(sol) polarization free energy of solvation -69.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds