Wall clock time and date at job start Sat Apr 11 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 117.00468 * 2 1 4 4 O 1.20829 * 119.99803 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00145 * 179.97438 * 3 2 1 6 6 O 1.42905 * 110.88820 * 37.42937 * 5 3 2 7 7 C 1.55162 * 111.00256 * 161.34621 * 5 3 2 8 8 C 1.54337 * 103.01799 * 153.38422 * 7 5 3 9 9 N 1.47023 * 107.26730 * 338.13983 * 8 7 5 10 10 C 1.34779 * 125.65203 * 178.85457 * 9 8 7 11 11 O 1.21585 * 119.99988 * 179.69170 * 10 9 8 12 12 N 1.34777 * 119.99711 * 359.69273 * 10 9 8 13 13 C 1.46497 * 120.00015 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.46733 * 325.00143 * 13 12 10 15 15 C 1.50694 * 109.47115 * 204.99781 * 13 12 10 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 13 12 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.53000 * 109.47145 * 84.99707 * 13 12 10 24 24 F 1.39903 * 109.47440 * 180.02562 * 23 13 12 25 25 F 1.39899 * 109.47255 * 300.00046 * 23 13 12 26 26 F 1.39900 * 109.47102 * 59.99912 * 23 13 12 27 27 C 1.47424 * 108.70072 * 358.58476 * 9 8 7 28 28 H 1.09007 * 109.46481 * 60.00325 * 1 2 3 29 29 H 1.09001 * 109.47377 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47354 * 300.00655 * 1 2 3 31 31 H 0.96706 * 113.99250 * 297.57023 * 6 5 3 32 32 H 1.09004 * 110.71927 * 271.93658 * 7 5 3 33 33 H 1.08994 * 110.72385 * 35.21523 * 7 5 3 34 34 H 1.09001 * 109.99025 * 218.66764 * 8 7 5 35 35 H 1.08995 * 109.78211 * 97.50064 * 8 7 5 36 36 H 0.97005 * 120.00104 * 359.97438 * 12 10 9 37 37 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 38 38 H 1.09005 * 110.36659 * 143.19046 * 27 9 8 39 39 H 1.09003 * 110.37315 * 265.41145 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 8 4.1309 0.2424 -0.8105 7 6 4.0501 2.6742 -0.4628 8 6 5.4241 2.8129 0.2263 9 7 5.4334 1.8902 1.3709 10 6 6.4650 1.6979 2.2166 11 8 6.3584 0.9098 3.1363 12 7 7.6148 2.3793 2.0429 13 6 8.7364 2.1700 2.9618 14 1 8.3540 1.9886 3.9663 15 6 9.6131 3.3956 2.9716 16 1 9.3605 4.2454 2.3548 17 6 10.7385 3.4318 3.7675 18 7 11.0465 2.3968 4.5183 19 14 11.8257 4.9508 3.7791 20 1 12.8723 4.8185 2.7340 21 1 10.9993 6.1532 3.5027 22 1 12.4698 5.0881 5.1101 23 6 9.5542 0.9616 2.5014 24 9 10.6249 0.7613 3.3793 25 9 8.7402 -0.1762 2.4923 26 9 10.0448 1.1944 1.2121 27 6 4.1250 1.2148 1.4442 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.9355 -0.6525 -0.5003 32 1 4.1551 2.7064 -1.5473 33 1 3.3691 3.4518 -0.1169 34 1 5.5650 3.8363 0.5740 35 1 6.2162 2.5444 -0.4727 36 1 7.6999 3.0078 1.3089 37 1 11.8385 2.4222 5.0778 38 1 4.2499 0.1790 1.7599 39 1 3.4634 1.7428 2.1309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434757433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:20 Heat of formation + Delta-G solvation = -281.013055 kcal Electronic energy + Delta-G solvation = -31404.990106 eV Core-core repulsion = 26320.486183 eV Total energy + Delta-G solvation = -5084.503923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.30862 -45.95998 -45.57934 -41.28386 -39.79041 -38.09552 -36.89989 -35.48788 -34.64025 -32.59787 -31.08057 -29.53484 -28.47677 -27.63123 -24.64149 -24.26746 -22.89312 -21.40793 -20.69243 -19.63194 -18.90689 -18.32325 -17.46568 -16.94505 -16.83564 -16.69687 -16.61074 -16.11647 -15.78801 -15.37473 -15.06785 -14.74878 -14.51297 -14.22985 -13.87755 -13.54831 -13.28611 -12.98800 -12.90854 -12.79932 -12.50219 -12.42485 -12.35881 -12.26407 -12.15566 -12.03017 -11.93238 -11.79160 -11.55222 -11.24106 -11.21818 -11.15398 -10.88431 -10.78795 -10.40346 -10.36954 -9.66589 -9.60971 -8.73438 -8.57105 -8.15350 -6.23346 -4.47322 1.64257 2.11926 2.93198 3.19200 3.25573 3.28192 3.62661 3.70842 3.87953 4.11679 4.19036 4.40636 4.54722 4.65349 4.72420 4.80962 4.89392 4.94028 5.01369 5.14345 5.33940 5.46407 5.55493 5.60573 5.81799 5.85375 5.90422 5.90888 6.17329 6.29874 6.84954 7.07998 7.18873 7.28823 7.35548 7.59642 7.64398 8.47760 8.55995 9.09358 9.22333 10.68247 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022946 B = 0.003033 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.937128 B = 9228.114005 C = 9741.050990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.454 3.546 4 O -0.493 6.493 5 C 0.129 3.871 6 O -0.525 6.525 7 C -0.105 4.105 8 C 0.103 3.897 9 N -0.636 5.636 10 C 0.721 3.279 11 O -0.579 6.579 12 N -0.720 5.720 13 C 0.262 3.738 14 H 0.086 0.914 15 C -0.552 4.552 16 H 0.077 0.923 17 C 0.065 3.935 18 N -0.839 5.839 19 Si 0.916 3.084 20 H -0.276 1.276 21 H -0.270 1.270 22 H -0.283 1.283 23 C 0.416 3.584 24 F -0.137 7.137 25 F -0.217 7.217 26 F -0.210 7.210 27 C 0.116 3.884 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.391 0.609 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.395 0.605 37 H 0.268 0.732 38 H 0.095 0.905 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.150 -1.797 -9.892 19.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.295 3.705 4 O -0.380 6.380 5 C 0.085 3.915 6 O -0.332 6.332 7 C -0.143 4.143 8 C -0.020 4.020 9 N -0.376 5.376 10 C 0.423 3.577 11 O -0.455 6.455 12 N -0.373 5.373 13 C 0.156 3.844 14 H 0.103 0.897 15 C -0.589 4.589 16 H 0.095 0.905 17 C -0.144 4.144 18 N -0.472 5.472 19 Si 0.742 3.258 20 H -0.202 1.202 21 H -0.195 1.195 22 H -0.208 1.208 23 C 0.359 3.641 24 F -0.118 7.118 25 F -0.198 7.198 26 F -0.192 7.192 27 C -0.009 4.009 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.241 0.759 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.229 0.771 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.962 -1.707 -9.302 18.553 hybrid contribution 0.309 0.284 -0.209 0.469 sum -15.653 -1.423 -9.512 18.371 Atomic orbital electron populations 1.23335 0.75753 1.04048 1.02744 1.86490 1.23990 1.33102 1.83606 1.24249 0.92026 0.81844 0.72376 1.90685 1.66578 1.36269 1.44428 1.22208 0.83449 0.92301 0.93506 1.86607 1.76140 1.17691 1.52732 1.22710 0.96763 0.92044 1.02752 1.21998 0.97346 0.94415 0.88281 1.47323 1.13336 1.45695 1.31292 1.15509 0.79481 0.81291 0.81435 1.90930 1.82006 1.39498 1.33114 1.45256 1.12486 1.45279 1.34261 1.19639 0.82358 0.91798 0.90591 0.89665 1.20870 1.09743 0.99642 1.28662 0.90473 1.25079 0.97319 0.97104 0.94873 1.70407 1.25923 1.27384 1.23517 0.86203 0.80084 0.81792 0.77694 1.20215 1.19489 1.20804 1.23161 0.80873 0.85277 0.74755 1.93402 1.56366 1.95135 1.66930 1.93071 1.73866 1.56473 1.96435 1.92985 1.89305 1.94780 1.42094 1.22421 0.85019 1.00363 0.93121 0.91726 0.87769 0.91602 0.75874 0.88191 0.87457 0.90535 0.90639 0.77091 0.92100 0.88704 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.25 10.21 -43.72 -0.45 -3.69 16 3 C 0.45 4.85 6.98 36.00 0.25 5.11 16 4 O -0.49 -6.19 15.49 -18.75 -0.29 -6.48 16 5 C 0.13 1.38 1.26 -89.62 -0.11 1.27 16 6 O -0.52 -5.54 13.11 -46.11 -0.60 -6.14 16 7 C -0.11 -1.04 5.98 -24.89 -0.15 -1.19 16 8 C 0.10 1.21 6.15 -3.06 -0.02 1.19 16 9 N -0.64 -9.84 3.33 -176.23 -0.59 -10.42 16 10 C 0.72 14.74 8.02 -86.92 -0.70 14.04 16 11 O -0.58 -14.00 15.17 5.29 0.08 -13.92 16 12 N -0.72 -15.02 4.94 -59.82 -0.30 -15.31 16 13 C 0.26 6.56 2.21 -69.09 -0.15 6.40 16 14 H 0.09 2.39 7.58 -51.93 -0.39 1.99 16 15 C -0.55 -14.04 8.47 -34.44 -0.29 -14.33 16 16 H 0.08 1.85 7.74 -52.49 -0.41 1.44 16 17 C 0.07 1.69 5.20 -17.82 -0.09 1.59 16 18 N -0.84 -22.96 9.50 55.43 0.53 -22.43 16 19 Si 0.92 19.99 29.54 -169.99 -5.02 14.97 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 C 0.42 10.77 2.81 37.16 0.10 10.87 16 24 F -0.14 -3.82 12.91 2.25 0.03 -3.79 16 25 F -0.22 -5.60 15.68 2.25 0.04 -5.56 16 26 F -0.21 -5.23 16.94 2.25 0.04 -5.19 16 27 C 0.12 1.48 6.09 -2.53 -0.02 1.47 16 28 H 0.06 0.40 8.13 -51.92 -0.42 -0.02 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.39 2.95 8.86 45.56 0.40 3.35 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.11 1.02 7.21 -51.93 -0.37 0.64 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.40 7.16 7.53 -40.82 -0.31 6.86 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.09 1.25 8.04 -51.93 -0.42 0.83 16 39 H 0.08 0.95 8.03 -51.93 -0.42 0.53 16 LS Contribution 343.99 15.07 5.18 5.18 Total: -1.00 -33.25 343.99 -5.04 -38.29 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -3.58 Total: 6.78 kcal Atomic # 6 Polarization: 27.82 SS G_CDS: -0.11 Total: 27.72 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.36 Total: -48.17 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -1.26 Total: -30.24 kcal Atomic # 9 Polarization: -14.64 SS G_CDS: 0.10 Total: -14.54 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.25 -5.04 -38.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434757433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -242.721 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -275.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -281.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds