Wall clock time and date at job start Sat Apr 11 2020 05:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 116.99573 * 2 1 4 4 O 1.20822 * 120.00249 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99281 * 180.02562 * 3 2 1 6 6 O 1.42902 * 110.78398 * 323.21210 * 5 3 2 7 7 C 1.55168 * 110.71778 * 199.97346 * 5 3 2 8 8 C 1.55129 * 101.48734 * 205.97070 * 7 5 3 9 9 N 1.47424 * 104.72190 * 37.29542 * 8 7 5 10 10 C 1.34777 * 125.64879 * 155.82174 * 9 8 7 11 11 O 1.21592 * 119.99968 * 179.69266 * 10 9 8 12 12 N 1.34770 * 119.99883 * 359.68736 * 10 9 8 13 13 C 1.46500 * 120.00256 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.46596 * 325.00243 * 13 12 10 15 15 C 1.50698 * 109.47583 * 205.00282 * 13 12 10 16 16 H 1.08004 * 119.99528 * 359.97438 * 15 13 12 17 17 C 1.37876 * 120.00356 * 180.02562 * 15 13 12 18 18 N 1.31518 * 119.99554 * 359.97438 * 17 15 13 19 19 Si 1.86790 * 120.00086 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47337 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47146 * 119.99673 * 19 17 15 22 22 H 1.48499 * 109.47460 * 239.99758 * 19 17 15 23 23 C 1.53006 * 109.47249 * 84.99846 * 13 12 10 24 24 F 1.39900 * 109.46764 * 60.00158 * 23 13 12 25 25 F 1.39897 * 109.47129 * 180.02562 * 23 13 12 26 26 F 1.39903 * 109.46814 * 300.00629 * 23 13 12 27 27 C 1.47031 * 108.70309 * 335.55181 * 9 8 7 28 28 H 1.09001 * 109.46819 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46970 * 299.99582 * 1 2 3 30 30 H 1.08999 * 109.47203 * 59.99866 * 1 2 3 31 31 H 0.96698 * 113.99738 * 61.78731 * 6 5 3 32 32 H 1.08994 * 111.00059 * 324.21450 * 7 5 3 33 33 H 1.08999 * 110.99901 * 88.06284 * 7 5 3 34 34 H 1.09007 * 110.49559 * 278.45911 * 8 7 5 35 35 H 1.08995 * 110.34091 * 156.05917 * 8 7 5 36 36 H 0.97005 * 120.00370 * 0.02562 * 12 10 9 37 37 H 0.97005 * 119.99198 * 180.02562 * 18 17 15 38 38 H 1.09003 * 109.87900 * 120.70314 * 27 9 8 39 39 H 1.08998 * 109.88169 * 241.86534 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 8 4.1290 0.2327 0.7991 7 6 4.0434 2.6656 0.4953 8 6 5.4265 2.7828 -0.1974 9 7 5.2361 2.1633 -1.5215 10 6 5.9711 2.4197 -2.6217 11 8 5.7269 1.8430 -3.6640 12 7 6.9765 3.3154 -2.5667 13 6 7.7751 3.5946 -3.7627 14 1 7.8875 2.6807 -4.3460 15 6 9.1347 4.0991 -3.3526 16 1 9.3792 4.2019 -2.3056 17 6 10.0659 4.4305 -4.3138 18 7 9.7679 4.3057 -5.5887 19 14 11.7508 5.0564 -3.8054 20 1 11.8343 5.1053 -2.3236 21 1 12.7974 4.1432 -4.3307 22 1 11.9601 6.4189 -4.3576 23 6 7.0711 4.6568 -4.6096 24 9 6.9269 5.8298 -3.8609 25 9 7.8335 4.9230 -5.7520 26 9 5.8090 4.1884 -4.9903 27 6 4.1157 1.2145 -1.4414 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 3.9242 -0.6585 0.4845 32 1 3.3673 3.4525 0.1610 33 1 4.1493 2.6783 1.5800 34 1 6.1842 2.2415 0.3692 35 1 5.7085 3.8301 -0.3056 36 1 7.1715 3.7753 -1.7352 37 1 10.4233 4.5385 -6.2649 38 1 3.3363 1.5009 -2.1476 39 1 4.4669 0.2066 -1.6624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434757435.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:25 Heat of formation + Delta-G solvation = -280.369365 kcal Electronic energy + Delta-G solvation = -31388.530776 eV Core-core repulsion = 26304.054766 eV Total energy + Delta-G solvation = -5084.476011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.112 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.31757 -45.97007 -45.58749 -41.30348 -39.78399 -38.13793 -36.89825 -35.53520 -34.64714 -32.60264 -31.02681 -29.55579 -28.48138 -27.62071 -24.64829 -24.28256 -22.90564 -21.43972 -20.68118 -19.64926 -18.95242 -18.34727 -17.49267 -16.95138 -16.85158 -16.68846 -16.61708 -16.09925 -15.68064 -15.35870 -15.19210 -14.77098 -14.45384 -14.28776 -13.84955 -13.55900 -13.35064 -12.96318 -12.91942 -12.79836 -12.49774 -12.39441 -12.36766 -12.27426 -12.21399 -12.02139 -11.90545 -11.78644 -11.65764 -11.21987 -11.20546 -11.15629 -10.86527 -10.79100 -10.42247 -10.38625 -9.65808 -9.60893 -8.74207 -8.60163 -8.16023 -6.23816 -4.47650 1.66215 2.12683 2.89407 3.18028 3.25627 3.29211 3.61350 3.68757 3.88522 4.08441 4.18845 4.41848 4.47603 4.64599 4.73589 4.82468 4.87678 4.93630 5.08553 5.15128 5.35275 5.45519 5.53302 5.57241 5.82796 5.86013 5.89805 5.92760 6.16606 6.29791 6.83978 7.02469 7.17880 7.28326 7.34765 7.59042 7.63921 8.47437 8.55321 9.08830 9.21982 10.67862 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.003060 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.930104 B = 9149.055132 C = 9677.570201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.452 3.548 4 O -0.490 6.490 5 C 0.134 3.866 6 O -0.528 6.528 7 C -0.108 4.108 8 C 0.103 3.897 9 N -0.639 5.639 10 C 0.720 3.280 11 O -0.578 6.578 12 N -0.721 5.721 13 C 0.262 3.738 14 H 0.086 0.914 15 C -0.551 4.551 16 H 0.078 0.922 17 C 0.065 3.935 18 N -0.839 5.839 19 Si 0.916 3.084 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.415 3.585 24 F -0.210 7.210 25 F -0.137 7.137 26 F -0.217 7.217 27 C 0.118 3.882 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.391 0.609 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.395 0.605 37 H 0.268 0.732 38 H 0.076 0.924 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.610 -6.909 12.974 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.293 3.707 4 O -0.376 6.376 5 C 0.090 3.910 6 O -0.335 6.335 7 C -0.146 4.146 8 C -0.020 4.020 9 N -0.380 5.380 10 C 0.422 3.578 11 O -0.455 6.455 12 N -0.374 5.374 13 C 0.156 3.844 14 H 0.104 0.896 15 C -0.588 4.588 16 H 0.096 0.904 17 C -0.144 4.144 18 N -0.472 5.472 19 Si 0.743 3.257 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.206 1.206 23 C 0.359 3.641 24 F -0.192 7.192 25 F -0.118 7.118 26 F -0.199 7.199 27 C -0.007 4.007 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.241 0.759 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.229 0.771 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.659 -6.475 12.185 18.726 hybrid contribution 0.210 0.362 0.100 0.430 sum -12.450 -6.113 12.285 18.528 Atomic orbital electron populations 1.23336 0.75725 1.04018 1.02808 1.86476 1.24027 1.33107 1.83724 1.24252 0.92071 0.81899 0.72527 1.90698 1.66475 1.36272 1.44148 1.22060 0.83613 0.92221 0.93072 1.86602 1.75740 1.17504 1.53682 1.22933 0.97194 0.92034 1.02449 1.22341 0.96685 0.99366 0.83595 1.47372 1.35133 1.45713 1.09756 1.15511 0.79538 0.80778 0.81981 1.90935 1.71507 1.54608 1.28419 1.45269 1.33604 1.43427 1.15056 1.19651 0.88375 0.94113 0.82274 0.89639 1.20907 0.95095 1.48363 0.94465 0.90400 1.25082 0.99742 0.94864 0.94728 1.70423 1.33620 1.43393 0.99790 0.86143 0.82189 0.78478 0.78917 1.19390 1.20562 1.20584 1.23178 0.76004 0.83417 0.81510 1.92983 1.95937 1.52831 1.77433 1.93402 1.72660 1.94276 1.51461 1.93075 1.45702 1.88656 1.92434 1.22131 0.89955 0.95216 0.93394 0.87769 0.91717 0.91574 0.75898 0.87392 0.88038 0.90343 0.89765 0.77084 0.92157 0.90548 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.25 10.18 -43.83 -0.45 -3.70 16 3 C 0.45 4.99 6.82 36.01 0.25 5.23 16 4 O -0.49 -6.58 15.50 -18.75 -0.29 -6.87 16 5 C 0.13 1.40 1.22 -89.93 -0.11 1.30 16 6 O -0.53 -4.80 13.02 -46.58 -0.61 -5.40 16 7 C -0.11 -1.11 6.10 -24.46 -0.15 -1.26 16 8 C 0.10 1.21 6.58 -2.41 -0.02 1.19 16 9 N -0.64 -9.95 3.33 -176.09 -0.59 -10.54 16 10 C 0.72 14.81 8.02 -86.92 -0.70 14.11 16 11 O -0.58 -14.12 15.24 5.29 0.08 -14.04 16 12 N -0.72 -15.02 4.94 -59.81 -0.30 -15.32 16 13 C 0.26 6.55 2.21 -69.08 -0.15 6.40 16 14 H 0.09 2.40 7.58 -51.93 -0.39 2.00 16 15 C -0.55 -14.00 8.46 -34.44 -0.29 -14.29 16 16 H 0.08 1.86 7.74 -52.48 -0.41 1.46 16 17 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 18 N -0.84 -22.96 9.50 55.43 0.53 -22.43 16 19 Si 0.92 19.98 29.54 -169.99 -5.02 14.96 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 C 0.42 10.79 2.81 37.16 0.10 10.89 16 24 F -0.21 -5.22 16.94 2.25 0.04 -5.19 16 25 F -0.14 -3.82 12.91 2.25 0.03 -3.79 16 26 F -0.22 -5.65 15.68 2.25 0.04 -5.61 16 27 C 0.12 1.53 6.21 -3.06 -0.02 1.52 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 30 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 31 H 0.39 2.24 8.81 45.56 0.40 2.64 16 32 H 0.11 1.18 7.22 -51.93 -0.37 0.80 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.93 7.29 -51.93 -0.38 0.55 16 36 H 0.39 7.11 7.01 -40.82 -0.29 6.83 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.08 1.07 7.81 -51.93 -0.41 0.67 16 39 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 LS Contribution 342.79 15.07 5.17 5.17 Total: -1.00 -33.49 342.79 -4.99 -38.48 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -3.51 Total: 6.32 kcal Atomic # 6 Polarization: 28.08 SS G_CDS: -0.11 Total: 27.97 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.35 Total: -48.29 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -1.26 Total: -30.01 kcal Atomic # 9 Polarization: -14.69 SS G_CDS: 0.10 Total: -14.59 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.49 -4.99 -38.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434757435.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -241.893 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -275.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -280.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds