Wall clock time and date at job start Sat Apr 11 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38343 * 119.86935 * 2 1 4 4 C 1.37943 * 120.17368 * 180.23643 * 3 2 1 5 5 C 1.39597 * 119.90305 * 359.49284 * 4 3 2 6 6 C 1.47856 * 120.13147 * 180.23378 * 5 4 3 7 7 O 1.21558 * 119.99872 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00143 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00118 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47375 * 180.02562 * 9 8 6 11 11 N 1.46504 * 109.47565 * 180.02562 * 10 9 8 12 12 C 1.34772 * 120.00304 * 180.02562 * 11 10 9 13 13 O 1.21278 * 119.99767 * 359.97438 * 12 11 10 14 14 C 1.50694 * 120.00039 * 179.97438 * 12 11 10 15 15 S 1.81000 * 109.47366 * 179.97438 * 14 12 11 16 16 C 1.76195 * 100.00278 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99915 * 0.02562 * 16 15 14 18 18 C 1.38800 * 120.00192 * 180.02562 * 16 15 14 19 19 N 1.31629 * 120.00200 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99698 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47134 * 90.00286 * 20 18 16 22 22 H 1.48504 * 109.47144 * 210.00140 * 20 18 16 23 23 H 1.48497 * 109.47404 * 330.00427 * 20 18 16 24 24 C 1.39527 * 119.73825 * 0.25250 * 5 4 3 25 25 C 1.38207 * 119.82448 * 0.02562 * 24 5 4 26 26 F 1.35102 * 119.95330 * 180.02562 * 25 24 5 27 27 H 1.08994 * 109.47409 * 270.27095 * 1 2 3 28 28 H 1.09005 * 109.47176 * 30.26892 * 1 2 3 29 29 H 1.09002 * 109.47607 * 150.26888 * 1 2 3 30 30 H 1.08000 * 119.91295 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.04993 * 179.77479 * 4 3 2 32 32 H 0.97005 * 119.99983 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.47558 * 300.00481 * 9 8 6 34 34 H 1.09005 * 109.47235 * 60.00306 * 9 8 6 35 35 H 1.09003 * 109.47146 * 300.00123 * 10 9 8 36 36 H 1.08999 * 109.47309 * 60.00378 * 10 9 8 37 37 H 0.97005 * 119.99710 * 359.97438 * 11 10 9 38 38 H 1.09004 * 109.47365 * 299.99767 * 14 12 11 39 39 H 1.09000 * 109.47338 * 60.00061 * 14 12 11 40 40 H 0.97003 * 120.00252 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.08667 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.1997 0.0000 4 6 3.5753 1.2070 -0.0049 5 6 4.2777 0.0006 0.0008 6 6 5.7563 0.0026 0.0008 7 8 6.3626 1.0561 -0.0047 8 7 6.4317 -1.1636 0.0068 9 6 7.8967 -1.1616 0.0062 10 6 8.4087 -2.6034 0.0132 11 7 9.8737 -2.6014 0.0132 12 6 10.5492 -3.7677 0.0184 13 8 9.9442 -4.8188 0.0234 14 6 12.0561 -3.7656 0.0178 15 16 12.6619 -5.4712 0.0262 16 6 14.3994 -5.1789 0.0233 17 1 14.7767 -4.1670 0.0182 18 6 15.2832 -6.2491 0.0277 19 7 16.5813 -6.0308 0.0260 20 14 14.6305 -7.9994 0.0372 21 1 14.4559 -8.4702 -1.3602 22 1 15.5945 -8.8833 0.7406 23 1 13.3223 -8.0360 0.7389 24 6 3.5790 -1.2071 0.0061 25 6 2.1969 -1.2016 0.0052 26 9 1.5177 -2.3694 0.0109 27 1 -0.3634 0.0049 1.0276 28 1 -0.3634 0.8876 -0.5180 29 1 -0.3634 -0.8924 -0.5096 30 1 1.6524 2.1329 -0.0004 31 1 4.1112 2.1447 -0.0086 32 1 5.9479 -2.0044 0.0108 33 1 8.2591 -0.6521 -0.8866 34 1 8.2597 -0.6425 0.8934 35 1 8.0464 -3.1133 0.9059 36 1 8.0458 -3.1221 -0.8741 37 1 10.3576 -1.7607 0.0088 38 1 12.4185 -3.2554 -0.8747 39 1 12.4191 -3.2472 0.9053 40 1 17.1990 -6.7787 0.0294 41 1 4.1167 -2.1437 0.0102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032965133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:34 Heat of formation + Delta-G solvation = -99.693894 kcal Electronic energy + Delta-G solvation = -24682.491382 eV Core-core repulsion = 20602.832449 eV Total energy + Delta-G solvation = -4079.658933 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.45796 -40.74714 -39.44087 -38.85834 -36.15241 -34.30715 -33.49494 -32.45844 -31.26009 -30.47984 -28.75198 -27.44940 -25.63365 -23.75262 -23.55416 -22.51268 -21.17314 -20.47633 -18.93972 -17.89649 -17.41612 -16.72169 -16.55787 -16.39608 -16.20066 -16.17888 -15.71207 -15.57773 -15.26127 -14.96741 -14.84736 -14.29728 -14.02366 -13.93535 -13.79011 -13.72696 -13.36485 -13.04591 -12.81807 -12.67180 -12.33568 -12.25012 -12.19605 -11.96217 -11.82043 -11.29129 -11.02688 -10.66113 -10.53879 -9.88664 -9.73018 -9.65194 -9.57828 -9.24905 -9.15201 -9.01666 -8.53657 -6.94921 -6.30730 -4.03073 0.07974 0.53535 2.21248 2.33827 2.81703 2.87212 3.12780 3.30562 3.34536 3.48565 3.53969 3.65433 3.96910 3.99635 4.23252 4.31228 4.35649 4.42700 4.55647 4.70304 4.70336 4.91548 4.93666 4.97061 5.06433 5.08342 5.23092 5.28892 5.34560 5.44546 5.50641 5.56354 5.62876 5.67754 5.72509 5.82784 5.97399 6.16976 6.34838 6.90077 7.46164 7.64281 7.92196 8.36888 8.39970 9.15274 10.78459 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.028874 B = 0.001549 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.494761 B =18075.975944 C =19014.419161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.093 4.093 3 C -0.101 4.101 4 C -0.064 4.064 5 C -0.112 4.112 6 C 0.563 3.437 7 O -0.528 6.528 8 N -0.721 5.721 9 C 0.109 3.891 10 C 0.110 3.890 11 N -0.734 5.734 12 C 0.533 3.467 13 O -0.518 6.518 14 C -0.124 4.124 15 S -0.141 6.141 16 C -0.523 4.523 17 H 0.089 0.911 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C -0.117 4.117 25 C 0.091 3.909 26 F -0.133 7.133 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.403 0.597 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.403 0.597 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.271 0.729 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.527 16.050 0.042 36.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.094 4.094 3 C -0.119 4.119 4 C -0.083 4.083 5 C -0.115 4.115 6 C 0.349 3.651 7 O -0.405 6.405 8 N -0.374 5.374 9 C -0.015 4.015 10 C -0.015 4.015 11 N -0.390 5.390 12 C 0.319 3.681 13 O -0.392 6.392 14 C -0.275 4.275 15 S 0.085 5.915 16 C -0.670 4.670 17 H 0.107 0.893 18 C -0.113 4.113 19 N -0.516 5.516 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.136 4.136 25 C 0.072 3.928 26 F -0.111 7.111 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.159 0.841 31 H 0.163 0.837 32 H 0.239 0.761 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.238 0.762 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -32.910 14.911 0.051 36.130 hybrid contribution 0.686 0.142 -0.035 0.701 sum -32.224 15.052 0.016 35.566 Atomic orbital electron populations 1.20828 0.89637 1.03871 1.03333 1.20231 0.97520 0.91932 0.99741 1.20969 0.93709 0.97427 0.99750 1.21361 0.93794 0.98060 0.95076 1.19710 0.92900 0.93608 1.05330 1.18087 0.86789 0.83726 0.76454 1.90816 1.69658 1.30874 1.49191 1.45698 1.07290 1.08857 1.75579 1.21508 0.79403 0.96896 1.03742 1.21331 0.81606 0.95270 1.03275 1.45751 1.05840 1.09320 1.78097 1.20300 0.89633 0.83075 0.75049 1.90707 1.70011 1.30899 1.47553 1.23276 0.92906 1.05278 1.06029 1.84788 1.06443 1.02849 1.97439 1.22312 0.88090 0.97691 1.58917 0.89334 1.24709 0.94100 0.99300 0.93146 1.69937 1.01231 1.32478 1.47957 0.86736 0.81045 0.84133 0.79935 1.19202 1.19909 1.15948 1.21291 0.92674 0.98868 1.00813 1.17340 0.89576 0.81370 1.04553 1.91526 1.79903 1.45795 1.93904 0.90201 0.90459 0.90762 0.84069 0.83705 0.76067 0.90229 0.90217 0.90810 0.90807 0.76250 0.88300 0.88260 0.91913 0.84147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.44 9.82 36.00 0.35 -0.08 16 2 C -0.09 -0.52 5.89 -104.47 -0.62 -1.14 16 3 C -0.10 -0.50 9.68 -39.65 -0.38 -0.88 16 4 C -0.06 -0.42 9.59 -39.18 -0.38 -0.80 16 5 C -0.11 -0.84 5.87 -104.97 -0.62 -1.45 16 6 C 0.56 5.16 7.77 -12.33 -0.10 5.06 16 7 O -0.53 -6.59 16.35 5.31 0.09 -6.51 16 8 N -0.72 -5.23 5.51 -61.25 -0.34 -5.57 16 9 C 0.11 0.84 5.79 -4.05 -0.02 0.82 16 10 C 0.11 1.03 5.79 -4.04 -0.02 1.00 16 11 N -0.73 -8.39 5.56 -60.30 -0.33 -8.72 16 12 C 0.53 8.94 7.85 -10.99 -0.09 8.85 16 13 O -0.52 -10.65 15.86 5.56 0.09 -10.56 16 14 C -0.12 -2.31 6.16 36.00 0.22 -2.09 16 15 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16 16 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 17 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 18 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 19 N -0.88 -26.38 13.97 55.49 0.78 -25.60 16 20 Si 0.86 21.60 27.74 -169.99 -4.71 16.88 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 24 C -0.12 -0.75 9.52 -39.11 -0.37 -1.12 16 25 C 0.09 0.62 7.23 -39.47 -0.29 0.34 16 26 F -0.13 -1.03 16.46 2.25 0.04 -0.99 16 27 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.17 8.09 -51.93 -0.42 -0.25 16 29 H 0.07 0.30 7.63 -51.93 -0.40 -0.10 16 30 H 0.14 0.35 8.06 -52.49 -0.42 -0.08 16 31 H 0.15 0.92 7.65 -52.49 -0.40 0.51 16 32 H 0.40 2.05 6.51 -40.82 -0.27 1.78 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.40 3.49 8.47 -40.82 -0.35 3.15 16 38 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 39 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 40 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.14 0.62 6.40 -52.49 -0.34 0.29 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -36.30 373.58 -7.98 -44.28 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.12 Total: 0.08 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -2.09 Total: -3.39 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.10 Total: -39.90 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.18 Total: -17.07 kcal Atomic # 9 Polarization: -1.03 SS G_CDS: 0.04 Total: -0.99 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.88 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.30 -7.98 -44.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032965133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.413 kcal (2) G-P(sol) polarization free energy of solvation -36.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds