Wall clock time and date at job start Sat Apr 11 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38343 * 119.86935 * 2 1 4 4 C 1.37943 * 120.17368 * 180.23643 * 3 2 1 5 5 C 1.39597 * 119.90305 * 359.49284 * 4 3 2 6 6 C 1.47856 * 120.13147 * 180.23378 * 5 4 3 7 7 O 1.21558 * 119.99872 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00143 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00118 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47375 * 180.02562 * 9 8 6 11 11 N 1.46504 * 109.47565 * 180.02562 * 10 9 8 12 12 C 1.34772 * 120.00304 * 180.02562 * 11 10 9 13 13 O 1.21278 * 119.99767 * 359.97438 * 12 11 10 14 14 C 1.50694 * 120.00039 * 179.97438 * 12 11 10 15 15 S 1.81000 * 109.47366 * 179.97438 * 14 12 11 16 16 C 1.76195 * 100.00278 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99915 * 0.02562 * 16 15 14 18 18 C 1.38800 * 120.00192 * 180.02562 * 16 15 14 19 19 N 1.31629 * 120.00200 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99698 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47134 * 90.00286 * 20 18 16 22 22 H 1.48504 * 109.47144 * 210.00140 * 20 18 16 23 23 H 1.48497 * 109.47404 * 330.00427 * 20 18 16 24 24 C 1.39527 * 119.73825 * 0.25250 * 5 4 3 25 25 C 1.38207 * 119.82448 * 0.02562 * 24 5 4 26 26 F 1.35102 * 119.95330 * 180.02562 * 25 24 5 27 27 H 1.08994 * 109.47409 * 270.27095 * 1 2 3 28 28 H 1.09005 * 109.47176 * 30.26892 * 1 2 3 29 29 H 1.09002 * 109.47607 * 150.26888 * 1 2 3 30 30 H 1.08000 * 119.91295 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.04993 * 179.77479 * 4 3 2 32 32 H 0.97005 * 119.99983 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.47558 * 300.00481 * 9 8 6 34 34 H 1.09005 * 109.47235 * 60.00306 * 9 8 6 35 35 H 1.09003 * 109.47146 * 300.00123 * 10 9 8 36 36 H 1.08999 * 109.47309 * 60.00378 * 10 9 8 37 37 H 0.97005 * 119.99710 * 359.97438 * 11 10 9 38 38 H 1.09004 * 109.47365 * 299.99767 * 14 12 11 39 39 H 1.09000 * 109.47338 * 60.00061 * 14 12 11 40 40 H 0.97003 * 120.00252 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.08667 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.1997 0.0000 4 6 3.5753 1.2070 -0.0049 5 6 4.2777 0.0006 0.0008 6 6 5.7563 0.0026 0.0008 7 8 6.3626 1.0561 -0.0047 8 7 6.4317 -1.1636 0.0068 9 6 7.8967 -1.1616 0.0062 10 6 8.4087 -2.6034 0.0132 11 7 9.8737 -2.6014 0.0132 12 6 10.5492 -3.7677 0.0184 13 8 9.9442 -4.8188 0.0234 14 6 12.0561 -3.7656 0.0178 15 16 12.6619 -5.4712 0.0262 16 6 14.3994 -5.1789 0.0233 17 1 14.7767 -4.1670 0.0182 18 6 15.2832 -6.2491 0.0277 19 7 16.5813 -6.0308 0.0260 20 14 14.6305 -7.9994 0.0372 21 1 14.4559 -8.4702 -1.3602 22 1 15.5945 -8.8833 0.7406 23 1 13.3223 -8.0360 0.7389 24 6 3.5790 -1.2071 0.0061 25 6 2.1969 -1.2016 0.0052 26 9 1.5177 -2.3694 0.0109 27 1 -0.3634 0.0049 1.0276 28 1 -0.3634 0.8876 -0.5180 29 1 -0.3634 -0.8924 -0.5096 30 1 1.6524 2.1329 -0.0004 31 1 4.1112 2.1447 -0.0086 32 1 5.9479 -2.0044 0.0108 33 1 8.2591 -0.6521 -0.8866 34 1 8.2597 -0.6425 0.8934 35 1 8.0464 -3.1133 0.9059 36 1 8.0458 -3.1221 -0.8741 37 1 10.3576 -1.7607 0.0088 38 1 12.4185 -3.2554 -0.8747 39 1 12.4191 -3.2472 0.9053 40 1 17.1990 -6.7787 0.0294 41 1 4.1167 -2.1437 0.0102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032965133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:33 Heat of formation + Delta-G solvation = -125.604677 kcal Electronic energy + Delta-G solvation = -24683.614958 eV Core-core repulsion = 20602.832449 eV Total energy + Delta-G solvation = -4080.782509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.98693 -41.38518 -40.66421 -39.45357 -37.04858 -35.23299 -34.66802 -34.01155 -31.87508 -31.51430 -29.65059 -28.11778 -27.79972 -24.40469 -24.07090 -23.12131 -22.04665 -21.45366 -19.97417 -19.44243 -18.11550 -17.80187 -17.31002 -17.16194 -17.14117 -16.96764 -16.79644 -16.51356 -16.31818 -16.28882 -15.61722 -15.33167 -15.24622 -14.92790 -14.67732 -14.43528 -14.31806 -14.24881 -13.79201 -13.36706 -13.34283 -13.06428 -12.96821 -12.94878 -12.75758 -12.66949 -12.63332 -12.40237 -11.86772 -11.31720 -11.16788 -11.05408 -10.53738 -10.39219 -10.20765 -10.05134 -9.73312 -8.99242 -8.51186 -6.22120 -0.42167 0.07501 0.97551 1.31976 1.44355 1.52021 1.53092 1.61765 1.78849 2.25028 2.43106 2.60053 2.73136 2.87248 3.06613 3.48251 3.54622 3.64584 3.86682 3.89402 3.95871 3.98445 4.14453 4.24605 4.35665 4.48850 4.53530 4.56840 4.73607 4.78653 4.81481 4.86994 4.94819 5.12192 5.16192 5.19673 5.25775 5.33187 5.70913 5.73278 6.11980 6.29313 6.40145 6.94012 6.99017 7.13628 8.61175 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.028874 B = 0.001549 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.494761 B =18075.975944 C =19014.419161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.091 4.091 3 C -0.095 4.095 4 C -0.070 4.070 5 C -0.128 4.128 6 C 0.563 3.437 7 O -0.567 6.567 8 N -0.712 5.712 9 C 0.118 3.882 10 C 0.114 3.886 11 N -0.710 5.710 12 C 0.539 3.461 13 O -0.559 6.559 14 C -0.113 4.113 15 S -0.175 6.175 16 C -0.530 4.530 17 H 0.062 0.938 18 C 0.046 3.954 19 N -0.917 5.917 20 Si 0.915 3.085 21 H -0.262 1.262 22 H -0.260 1.260 23 H -0.236 1.236 24 C -0.114 4.114 25 C 0.071 3.929 26 F -0.141 7.141 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.170 0.830 31 H 0.144 0.856 32 H 0.415 0.585 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.419 0.581 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.277 0.723 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.823 16.661 0.064 38.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.093 4.093 3 C -0.113 4.113 4 C -0.089 4.089 5 C -0.131 4.131 6 C 0.351 3.649 7 O -0.447 6.447 8 N -0.365 5.365 9 C -0.006 4.006 10 C -0.010 4.010 11 N -0.365 5.365 12 C 0.325 3.675 13 O -0.437 6.437 14 C -0.264 4.264 15 S 0.052 5.948 16 C -0.678 4.678 17 H 0.081 0.919 18 C -0.160 4.160 19 N -0.555 5.555 20 Si 0.737 3.263 21 H -0.187 1.187 22 H -0.184 1.184 23 H -0.160 1.160 24 C -0.134 4.134 25 C 0.052 3.948 26 F -0.120 7.120 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.187 0.813 31 H 0.162 0.838 32 H 0.253 0.747 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.257 0.743 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.086 0.914 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -35.221 15.549 0.073 38.501 hybrid contribution 1.299 0.131 -0.047 1.307 sum -33.922 15.680 0.027 37.371 Atomic orbital electron populations 1.20907 0.88187 1.04574 1.04066 1.20544 0.98686 0.91637 0.98392 1.21243 0.93081 0.98383 0.98596 1.21514 0.94636 0.97798 0.94976 1.19632 0.91949 0.94413 1.07100 1.18336 0.87469 0.83429 0.75660 1.90792 1.70476 1.32170 1.51304 1.45615 1.07134 1.09075 1.74702 1.21369 0.79679 0.95622 1.03966 1.21398 0.79808 0.96303 1.03487 1.45480 1.06918 1.08443 1.75702 1.19886 0.88691 0.83823 0.75143 1.90700 1.70370 1.32605 1.50055 1.23276 0.94575 1.00828 1.07704 1.84687 1.03882 1.08668 1.97596 1.22475 0.90398 0.96636 1.58287 0.91945 1.25566 0.94337 1.03185 0.92864 1.70018 1.02423 1.33944 1.49134 0.85864 0.80616 0.79659 0.80208 1.18708 1.18420 1.15967 1.21395 0.92732 0.99146 1.00109 1.17567 0.89899 0.81620 1.05719 1.91504 1.80037 1.46304 1.94111 0.89355 0.88592 0.91250 0.81280 0.83836 0.74734 0.90051 0.90039 0.90631 0.90624 0.74313 0.86653 0.86626 0.91387 0.82690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 9.82 71.23 0.70 0.07 16 2 C -0.09 -0.87 5.89 -19.76 -0.12 -0.99 16 3 C -0.10 -0.76 9.68 22.22 0.22 -0.55 16 4 C -0.07 -0.85 9.59 22.53 0.22 -0.63 16 5 C -0.13 -1.79 5.87 -20.09 -0.12 -1.91 16 6 C 0.56 9.86 7.77 86.79 0.67 10.53 16 7 O -0.57 -13.94 16.35 -3.90 -0.06 -14.00 16 8 N -0.71 -9.27 5.51 -465.97 -2.57 -11.83 16 9 C 0.12 1.60 5.79 86.38 0.50 2.10 16 10 C 0.11 1.88 5.79 86.38 0.50 2.38 16 11 N -0.71 -14.53 5.56 -463.07 -2.57 -17.10 16 12 C 0.54 17.12 7.85 87.66 0.69 17.81 16 13 O -0.56 -22.38 15.86 -3.02 -0.05 -22.42 16 14 C -0.11 -4.04 6.16 71.23 0.44 -3.60 16 15 S -0.17 -8.64 18.55 -56.49 -1.05 -9.69 16 16 C -0.53 -30.55 10.04 67.95 0.68 -29.87 16 17 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 18 C 0.05 2.67 5.50 84.86 0.47 3.14 16 19 N -0.92 -55.60 13.97 21.65 0.30 -55.30 16 20 Si 0.91 44.57 27.74 68.60 1.90 46.48 16 21 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 23 H -0.24 -11.42 6.74 99.48 0.67 -10.75 16 24 C -0.11 -1.34 9.52 22.57 0.21 -1.13 16 25 C 0.07 0.90 7.23 22.34 0.16 1.06 16 26 F -0.14 -2.07 16.46 44.97 0.74 -1.33 16 27 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.10 0.14 8.09 -2.38 -0.02 0.13 16 29 H 0.07 0.45 7.63 -2.39 -0.02 0.43 16 30 H 0.17 0.33 8.06 -2.91 -0.02 0.30 16 31 H 0.14 1.74 7.65 -2.91 -0.02 1.71 16 32 H 0.41 3.49 6.51 -92.70 -0.60 2.89 16 33 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.42 6.06 8.47 -92.70 -0.79 5.27 16 38 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 39 H 0.12 3.78 8.14 -2.40 -0.02 3.76 16 40 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.16 1.17 6.40 -2.91 -0.02 1.15 16 Total: -1.00 -79.02 373.58 1.53 -77.49 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -0.34 Total: 9.30 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 5.22 Total: -1.59 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -4.84 Total: -84.23 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -0.11 Total: -36.43 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.74 Total: -1.33 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.90 Total: 46.48 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.05 Total: -9.69 kcal Total: -79.02 1.53 -77.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032965133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.115 kcal (2) G-P(sol) polarization free energy of solvation -79.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds