Wall clock time and date at job start Sat Apr 11 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 120.00406 * 2 1 4 4 H 1.48499 * 109.47216 * 240.00818 * 3 2 1 5 5 H 1.48503 * 109.47231 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47224 * 120.00388 * 3 2 1 7 7 C 1.38804 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00040 * 179.97438 * 7 2 1 9 9 S 1.76193 * 119.99781 * 359.97438 * 7 2 1 10 10 C 1.81008 * 99.99940 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47099 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00289 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99724 * 180.02562 * 11 10 9 14 14 C 1.47072 * 120.87925 * 179.97438 * 13 11 10 15 15 C 1.53237 * 108.51957 * 231.20190 * 14 13 11 16 16 N 1.46896 * 109.34313 * 306.17182 * 15 14 13 17 17 C 1.46896 * 111.00227 * 187.25696 * 16 15 14 18 18 C 1.52998 * 109.47260 * 170.00151 * 17 16 15 19 19 C 1.50706 * 109.47222 * 179.97438 * 18 17 16 20 20 C 1.33380 * 125.20446 * 89.71318 * 19 18 17 21 21 C 1.38424 * 114.91979 * 179.85799 * 20 19 18 22 22 C 1.33387 * 114.92317 * 0.43559 * 21 20 19 23 23 S 1.75886 * 109.59281 * 359.76596 * 22 21 20 24 24 C 1.46898 * 111.26994 * 63.10279 * 16 15 14 25 25 C 1.47077 * 120.88011 * 0.02562 * 13 11 10 26 26 H 0.97003 * 120.00016 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.46807 * 59.99985 * 10 9 7 28 28 H 1.09000 * 109.46999 * 300.00428 * 10 9 7 29 29 H 1.09002 * 109.62989 * 111.49242 * 14 13 11 30 30 H 1.08997 * 109.79411 * 351.00761 * 14 13 11 31 31 H 1.09007 * 109.49249 * 186.21015 * 15 14 13 32 32 H 1.09003 * 109.49641 * 66.13656 * 15 14 13 33 33 H 1.08998 * 109.47699 * 49.99281 * 17 16 15 34 34 H 1.09007 * 109.46840 * 289.99842 * 17 16 15 35 35 H 1.09003 * 109.47567 * 59.99724 * 18 17 16 36 36 H 1.09004 * 109.47189 * 299.99176 * 18 17 16 37 37 H 1.08001 * 122.54115 * 0.02562 * 20 19 18 38 38 H 1.08004 * 122.54250 * 180.19862 * 21 20 19 39 39 H 1.07997 * 125.20716 * 179.78972 * 22 21 20 40 40 H 1.09002 * 109.49156 * 56.85845 * 24 16 15 41 41 H 1.08997 * 109.49131 * 176.93880 * 24 16 15 42 42 H 1.09005 * 109.62552 * 248.50420 * 25 13 11 43 43 H 1.09000 * 109.63254 * 9.08019 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2855 2.7465 0.0006 6 1 3.1042 1.6962 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1291 -2.7279 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9870 -5.3028 -0.0012 12 8 0.7907 -5.5023 -0.0011 13 7 2.8438 -6.3432 -0.0008 14 6 2.3492 -7.7283 -0.0008 15 6 3.0425 -8.4927 1.1319 16 7 4.4982 -8.3530 0.9935 17 6 5.2033 -9.2099 1.9560 18 6 6.6963 -9.2309 1.6220 19 6 7.4197 -10.1095 2.6099 20 6 7.6267 -11.4194 2.4664 21 6 8.3199 -12.0175 3.5045 22 6 8.6681 -11.1951 4.4953 23 16 8.1137 -9.5659 4.1319 24 6 4.9147 -6.9512 1.1329 25 6 4.2981 -6.1236 0.0009 26 1 -0.4850 0.8401 0.0004 27 1 3.1243 -3.7314 0.8895 28 1 3.1243 -3.7314 -0.8905 29 1 2.5806 -8.1998 -0.9560 30 1 1.2711 -7.7352 0.1591 31 1 2.7716 -9.5472 1.0782 32 1 2.7276 -8.0845 2.0923 33 1 4.8044 -10.2228 1.9011 34 1 5.0618 -8.8178 2.9632 35 1 7.0952 -8.2180 1.6770 36 1 6.8379 -9.6230 0.6149 37 1 7.2819 -11.9710 1.6043 38 1 8.5575 -13.0710 3.5135 39 1 9.2081 -11.4851 5.3845 40 1 4.5738 -6.5643 2.0932 41 1 6.0015 -6.8877 1.0798 42 1 4.7173 -6.4405 -0.9542 43 1 4.5086 -5.0666 0.1636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056302618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:40 Heat of formation + Delta-G solvation = -13.431690 kcal Electronic energy + Delta-G solvation = -23854.591972 eV Core-core repulsion = 20344.886825 eV Total energy + Delta-G solvation = -3509.705147 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.22216 -39.42320 -38.59888 -36.12166 -34.58693 -33.53603 -32.41038 -30.82385 -29.20354 -27.71096 -27.10508 -24.85045 -24.58139 -22.94192 -22.09597 -20.37502 -20.08286 -19.50043 -18.32514 -17.96296 -17.02314 -16.87539 -16.75252 -16.50677 -16.24589 -16.06402 -15.84663 -15.53783 -15.11876 -14.67540 -14.48261 -14.39094 -14.08328 -13.64848 -13.48890 -13.45089 -13.17850 -13.09168 -12.96921 -12.87411 -12.83747 -12.63752 -12.37831 -12.27493 -12.19740 -11.76540 -11.72585 -11.48069 -11.13001 -10.90234 -10.27711 -9.89615 -9.53116 -9.40468 -9.33260 -8.68176 -8.34519 -6.13293 0.10309 0.74577 1.13037 1.24460 1.44072 1.45172 1.54399 1.55111 1.87225 2.06301 2.27315 2.78217 2.99447 3.23948 3.62218 3.82528 3.90440 3.97529 4.03698 4.11729 4.20812 4.25364 4.28600 4.35677 4.37772 4.45151 4.52849 4.53984 4.69056 4.72283 4.75911 4.83333 4.84818 4.93507 5.03628 5.12676 5.27870 5.41271 5.42815 5.47862 5.63192 5.92701 5.95205 6.19373 6.28352 7.06333 7.10771 8.74447 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018363 B = 0.001989 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.469954 B =14073.528232 C =15237.626582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.152 6.152 10 C -0.123 4.123 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.611 5.611 14 C 0.116 3.884 15 C 0.051 3.949 16 N -0.534 5.534 17 C 0.067 3.933 18 C -0.040 4.040 19 C -0.178 4.178 20 C -0.144 4.144 21 C -0.141 4.141 22 C -0.221 4.221 23 S 0.064 5.936 24 C 0.039 3.961 25 C 0.107 3.893 26 H 0.271 0.729 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.024 0.976 33 H 0.087 0.913 34 H 0.026 0.974 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.179 0.821 40 H 0.028 0.972 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.400 -25.276 5.563 33.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.075 5.925 10 C -0.274 4.274 11 C 0.321 3.679 12 O -0.446 6.446 13 N -0.345 5.345 14 C -0.007 4.007 15 C -0.077 4.077 16 N -0.258 5.258 17 C -0.061 4.061 18 C -0.079 4.079 19 C -0.295 4.295 20 C -0.174 4.174 21 C -0.171 4.171 22 C -0.356 4.356 23 S 0.327 5.673 24 C -0.089 4.089 25 C -0.015 4.015 26 H 0.080 0.920 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.128 0.872 32 H 0.042 0.958 33 H 0.105 0.895 34 H 0.045 0.955 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.172 0.828 38 H 0.175 0.825 39 H 0.196 0.804 40 H 0.046 0.954 41 H 0.131 0.869 42 H 0.114 0.886 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 19.713 -24.263 5.856 31.806 hybrid contribution 1.021 0.205 0.321 1.089 sum 20.734 -24.059 6.177 32.355 Atomic orbital electron populations 1.70180 1.07991 1.28674 1.47898 1.26146 0.95982 1.03350 0.93721 0.84999 0.77805 0.75622 0.79548 1.18541 1.20443 1.18634 1.23159 0.95346 0.91864 1.59015 0.89828 1.85599 1.10594 0.99291 1.97030 1.23360 1.03423 0.94316 1.06309 1.20151 0.85972 0.86682 0.75141 1.90671 1.17224 1.85791 1.50901 1.48190 1.07461 1.05639 1.73230 1.21747 0.99080 0.79786 1.00047 1.22421 0.87427 1.01682 0.96217 1.61959 1.05229 1.07244 1.51386 1.22079 0.93504 0.97853 0.92663 1.20106 0.92300 0.98356 0.97161 1.24582 1.06920 0.98344 0.99678 1.20429 1.01866 0.93628 1.01485 1.20485 1.00675 1.02153 0.93814 1.25893 1.08956 0.95450 1.05298 1.84539 1.54517 1.11548 1.16675 1.22578 1.01916 0.87826 0.96604 1.22087 0.77641 1.01221 1.00584 0.91997 0.87613 0.87316 0.89308 0.90604 0.87194 0.95764 0.89464 0.95537 0.90461 0.88084 0.82772 0.82472 0.80402 0.95397 0.86883 0.88639 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.23 13.22 21.65 0.29 -55.94 16 2 C 0.01 0.73 5.49 84.86 0.47 1.20 16 3 Si 1.00 43.53 29.55 68.60 2.03 45.56 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.55 -31.25 9.50 67.96 0.65 -30.60 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 10 C -0.12 -4.99 4.52 71.24 0.32 -4.67 16 11 C 0.53 20.62 7.73 87.66 0.68 21.29 16 12 O -0.57 -27.14 15.32 -3.04 -0.05 -27.19 16 13 N -0.61 -17.00 3.01 -818.05 -2.46 -19.46 16 14 C 0.12 2.72 6.59 86.35 0.57 3.29 16 15 C 0.05 0.93 5.62 86.38 0.49 1.42 16 16 N -0.53 -8.35 4.63 -895.37 -4.15 -12.50 16 17 C 0.07 0.88 4.94 86.30 0.43 1.31 16 18 C -0.04 -0.45 5.64 29.85 0.17 -0.28 16 19 C -0.18 -2.31 5.76 24.59 0.14 -2.16 16 20 C -0.14 -1.68 10.05 21.21 0.21 -1.47 16 21 C -0.14 -1.55 10.18 21.22 0.22 -1.33 16 22 C -0.22 -2.59 11.23 66.72 0.75 -1.84 16 23 S 0.06 0.90 23.33 -56.49 -1.32 -0.42 16 24 C 0.04 0.65 5.46 86.37 0.47 1.12 16 25 C 0.11 2.12 6.50 86.33 0.56 2.68 16 26 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 27 H 0.11 3.89 7.66 -2.39 -0.02 3.87 16 28 H 0.11 3.97 8.00 -2.39 -0.02 3.95 16 29 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 2.13 7.07 -2.39 -0.02 2.11 16 31 H 0.11 1.50 7.99 -2.38 -0.02 1.48 16 32 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 1.03 7.97 -2.39 -0.02 1.02 16 34 H 0.03 0.41 8.13 -2.38 -0.02 0.39 16 35 H 0.08 0.86 6.40 -2.39 -0.02 0.84 16 36 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 38 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 39 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 40 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.11 1.35 6.16 -2.39 -0.01 1.33 16 42 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 43 H 0.09 1.86 6.02 -2.39 -0.01 1.84 16 Total: -1.00 -76.32 376.56 0.30 -76.02 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 1.00 Total: 13.72 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 6.11 Total: -10.06 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -6.32 Total: -87.90 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.05 Total: -27.19 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -7.67 SS G_CDS: -2.48 Total: -10.15 kcal Total: -76.32 0.30 -76.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056302618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.593 kcal (2) G-P(sol) polarization free energy of solvation -76.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds