Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31428 * 1 3 3 Si 1.86811 * 119.99980 * 2 1 4 4 H 1.48496 * 109.46641 * 239.99852 * 3 2 1 5 5 H 1.48501 * 109.46714 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47108 * 119.99494 * 3 2 1 7 7 C 1.38962 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99861 * 180.02562 * 7 2 1 9 9 N 1.36990 * 119.99656 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99599 * 179.97438 * 9 7 2 11 11 O 1.21682 * 119.99820 * 359.97438 * 10 9 7 12 12 C 1.46924 * 119.99713 * 180.02562 * 10 9 7 13 13 C 1.41412 * 126.48703 * 359.97109 * 12 10 9 14 14 N 1.30394 * 108.21159 * 180.02562 * 13 12 10 15 15 N 1.39908 * 109.17972 * 0.02562 * 14 13 12 16 16 C 1.40195 * 125.77019 * 179.97438 * 15 14 13 17 17 C 1.38841 * 120.04314 * 144.75265 * 16 15 14 18 18 C 1.38101 * 119.95938 * 179.72010 * 17 16 15 19 19 C 1.38490 * 120.03855 * 0.55256 * 18 17 16 20 20 F 1.35099 * 119.95312 * 179.70336 * 19 18 17 21 21 C 1.38481 * 120.08753 * 359.72047 * 19 18 17 22 22 C 1.38104 * 120.04324 * 0.02562 * 21 19 18 23 23 C 1.35030 * 108.45349 * 359.97438 * 15 14 13 24 24 N 1.38958 * 126.43423 * 180.02562 * 23 15 14 25 25 C 1.36733 * 125.68951 * 314.67314 * 24 23 15 26 26 C 1.34792 * 108.18839 * 179.88801 * 25 24 23 27 27 C 1.41023 * 107.49997 * 0.37336 * 26 25 24 28 28 C 1.34788 * 107.50299 * 359.76209 * 27 26 25 29 29 H 0.96997 * 119.99639 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99851 * 0.02562 * 9 7 2 31 31 H 1.07998 * 125.89674 * 0.07919 * 13 12 10 32 32 H 1.08005 * 120.01586 * 359.97438 * 17 16 15 33 33 H 1.07995 * 119.98139 * 180.26940 * 18 17 16 34 34 H 1.08004 * 119.98048 * 179.97438 * 21 19 18 35 35 H 1.08001 * 120.02491 * 180.02562 * 22 21 19 36 36 H 1.08000 * 125.90123 * 0.02562 * 25 24 23 37 37 H 1.07992 * 126.25039 * 180.15605 * 26 25 24 38 38 H 1.08003 * 126.24858 * 179.78985 * 27 26 25 39 39 H 1.08005 * 125.90530 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.1020 1.6964 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0091 -1.2034 0.0005 8 1 3.0892 -1.2033 0.0010 9 7 1.3242 -2.3898 0.0005 10 6 1.9981 -3.5570 0.0005 11 8 3.2149 -3.5569 0.0001 12 6 1.2635 -4.8294 0.0000 13 6 -0.1416 -4.9891 0.0000 14 7 -0.4065 -6.2659 -0.0001 15 7 0.7939 -6.9844 0.0005 16 6 0.9129 -8.3813 0.0011 17 6 1.9500 -8.9910 -0.6920 18 6 2.0688 -10.3669 -0.6854 19 6 1.1477 -11.1390 0.0025 20 9 1.2622 -12.4851 0.0028 21 6 0.1093 -10.5331 0.6898 22 6 -0.0099 -9.1572 0.6899 23 6 1.8185 -6.1049 0.0003 24 7 3.1729 -6.4157 0.0002 25 6 3.7758 -7.3550 0.7900 26 6 5.0921 -7.3665 0.4999 27 6 5.3149 -6.3953 -0.4980 28 6 4.1259 -5.8292 -0.7854 29 1 -0.4849 0.8400 -0.0004 30 1 0.3542 -2.3897 -0.0002 31 1 -0.8696 -4.1914 -0.0008 32 1 2.6657 -8.3893 -1.2326 33 1 2.8779 -10.8412 -1.2208 34 1 -0.6083 -11.1370 1.2254 35 1 -0.8196 -8.6850 1.2263 36 1 3.2823 -7.9811 1.5186 37 1 5.8401 -8.0009 0.9519 38 1 6.2647 -6.1502 -0.9499 39 1 3.9555 -5.0470 -1.5104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060332178.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = 96.733146 kcal Electronic energy + Delta-G solvation = -28544.740042 eV Core-core repulsion = 24370.447624 eV Total energy + Delta-G solvation = -4174.292418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.22160 -42.17165 -40.37202 -39.20524 -37.83483 -34.12587 -33.69498 -32.54755 -31.58088 -31.35291 -28.98494 -28.72008 -28.51407 -25.34052 -23.72769 -23.52994 -22.26528 -21.57319 -20.41655 -20.01297 -18.98251 -18.61424 -18.04896 -17.81623 -16.79517 -16.42684 -15.92659 -15.73349 -15.28753 -14.77713 -14.67756 -14.52880 -14.08571 -13.98918 -13.81176 -13.65417 -13.54031 -13.26021 -13.19812 -12.86198 -12.68504 -12.51126 -12.14441 -11.83573 -11.63282 -11.49836 -11.15758 -10.95604 -10.52384 -10.33627 -10.23448 -9.67522 -9.57504 -9.38995 -8.64114 -8.42263 -8.15732 -8.02591 -7.82487 -6.57765 -3.91824 0.36901 0.78836 1.43665 1.87068 2.33805 2.64371 3.06396 3.16479 3.19311 3.19850 3.24055 3.34279 3.86693 4.05485 4.22462 4.24228 4.41773 4.51412 4.75279 4.88946 4.98333 5.07552 5.19371 5.24751 5.34530 5.37334 5.49633 5.63641 5.69968 5.72342 5.73005 5.83786 5.90310 6.22322 6.28086 6.46483 6.50593 6.51296 6.75294 7.15260 7.30427 7.41407 7.53901 7.67099 7.92282 8.46411 9.02806 9.38194 9.92042 10.59207 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019475 B = 0.003054 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.396174 B = 9165.983310 C =10417.055155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.293 4.293 8 H 0.108 0.892 9 N -0.541 5.541 10 C 0.499 3.501 11 O -0.588 6.588 12 C -0.225 4.225 13 C 0.093 3.907 14 N -0.276 5.276 15 N -0.327 5.327 16 C 0.140 3.860 17 C -0.089 4.089 18 C -0.129 4.129 19 C 0.097 3.903 20 F -0.136 7.136 21 C -0.137 4.137 22 C -0.079 4.079 23 C 0.323 3.677 24 N -0.383 5.383 25 C -0.033 4.033 26 C -0.175 4.175 27 C -0.216 4.216 28 C 0.075 3.925 29 H 0.276 0.724 30 H 0.393 0.607 31 H 0.204 0.796 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.190 -18.503 -0.429 18.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.179 4.179 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.423 4.423 8 H 0.125 0.875 9 N -0.174 5.174 10 C 0.286 3.714 11 O -0.475 6.475 12 C -0.240 4.240 13 C -0.095 4.095 14 N -0.094 5.094 15 N -0.105 5.105 16 C 0.048 3.952 17 C -0.109 4.109 18 C -0.149 4.149 19 C 0.077 3.923 20 F -0.115 7.115 21 C -0.157 4.157 22 C -0.099 4.099 23 C 0.106 3.894 24 N -0.061 5.061 25 C -0.158 4.158 26 C -0.200 4.200 27 C -0.239 4.239 28 C -0.051 4.051 29 H 0.086 0.914 30 H 0.226 0.774 31 H 0.220 0.780 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.164 0.836 36 H 0.170 0.830 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.368 -19.199 -0.420 19.207 hybrid contribution 0.289 1.322 0.169 1.364 sum -0.079 -17.877 -0.251 17.879 Atomic orbital electron populations 1.69599 1.06050 1.28782 1.48746 1.25343 0.95688 0.99992 0.96858 0.85856 0.78810 0.80007 0.79275 1.19683 1.20832 1.19706 1.19743 0.93623 0.81910 1.46996 0.87464 1.41695 1.09251 1.04349 1.62135 1.16532 0.87009 0.81914 0.85954 1.90659 1.12589 1.86497 1.57709 1.20509 0.93170 0.93081 1.17280 1.24243 0.95246 0.93992 0.95989 1.77282 1.00901 1.05336 1.25906 1.45648 1.03755 1.03308 1.57778 1.17515 0.98469 0.79065 1.00154 1.20996 0.97751 0.94460 0.97731 1.20948 0.99949 0.92842 1.01116 1.17734 0.97091 0.77193 1.00309 1.91517 1.95754 1.29208 1.95003 1.21022 0.98670 0.94604 1.01357 1.20864 0.98976 0.92447 0.97589 1.17795 0.80271 0.88639 1.02739 1.40476 1.01656 1.31846 1.32131 1.21734 0.93918 0.98633 1.01474 1.20860 0.94384 1.02810 1.01918 1.20874 0.97197 1.01978 1.03866 1.22097 0.86466 0.98596 0.97981 0.91437 0.77362 0.77960 0.84030 0.83592 0.83706 0.83629 0.82973 0.84501 0.84245 0.81214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.95 13.05 55.50 0.72 -22.23 16 2 C 0.02 0.62 5.50 -17.46 -0.10 0.52 16 3 Si 0.93 20.10 29.55 -169.99 -5.02 15.08 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.29 -7.76 9.68 -14.98 -0.14 -7.90 16 8 H 0.11 2.96 7.15 -52.49 -0.38 2.59 16 9 N -0.54 -13.13 5.27 -12.09 -0.06 -13.19 16 10 C 0.50 11.65 7.73 -12.74 -0.10 11.55 16 11 O -0.59 -15.13 12.88 5.21 0.07 -15.06 16 12 C -0.22 -4.37 6.13 -104.85 -0.64 -5.02 16 13 C 0.09 1.54 11.49 -16.95 -0.19 1.35 16 14 N -0.28 -4.43 12.23 30.88 0.38 -4.05 16 15 N -0.33 -5.15 3.72 -9.36 -0.03 -5.18 16 16 C 0.14 1.82 5.92 -83.58 -0.49 1.33 16 17 C -0.09 -1.04 7.54 -39.41 -0.30 -1.33 16 18 C -0.13 -1.24 10.02 -39.54 -0.40 -1.64 16 19 C 0.10 0.93 7.30 -39.40 -0.29 0.64 16 20 F -0.14 -1.35 17.27 2.25 0.04 -1.31 16 21 C -0.14 -1.24 10.02 -39.54 -0.40 -1.64 16 22 C -0.08 -0.86 9.75 -39.41 -0.38 -1.24 16 23 C 0.32 5.78 6.84 -152.78 -1.05 4.74 16 24 N -0.38 -6.55 1.84 -62.13 -0.11 -6.66 16 25 C -0.03 -0.50 8.48 -16.59 -0.14 -0.64 16 26 C -0.17 -2.46 10.86 -39.75 -0.43 -2.89 16 27 C -0.22 -3.31 10.86 -39.75 -0.43 -3.74 16 28 C 0.08 1.32 8.95 -16.59 -0.15 1.18 16 29 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 30 H 0.39 8.97 6.84 -40.82 -0.28 8.69 16 31 H 0.20 2.82 7.49 -52.49 -0.39 2.43 16 32 H 0.14 1.80 6.48 -52.48 -0.34 1.46 16 33 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.15 0.97 8.06 -52.48 -0.42 0.54 16 35 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.15 2.03 7.86 -52.49 -0.41 1.62 16 37 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 38 H 0.14 1.86 8.06 -52.48 -0.42 1.43 16 39 H 0.17 3.19 7.11 -52.48 -0.37 2.81 16 LS Contribution 345.70 15.07 5.21 5.21 Total: -1.00 -29.80 345.70 -7.87 -37.67 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -3.42 Total: 14.46 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -5.63 Total: -4.73 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.89 Total: -51.32 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.07 Total: -15.06 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.80 -7.87 -37.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060332178.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.407 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds