Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99978 * 2 1 4 4 H 1.48495 * 109.47105 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46821 * 299.99500 * 3 2 1 6 6 H 1.48496 * 109.47346 * 59.99509 * 3 2 1 7 7 C 1.38809 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99730 * 163.06493 * 7 2 1 9 9 N 1.36935 * 120.00128 * 343.06533 * 7 2 1 10 10 C 1.46923 * 120.63046 * 331.83929 * 9 7 2 11 11 C 1.53191 * 108.77728 * 233.62599 * 10 9 7 12 12 C 1.53032 * 109.31714 * 305.37092 * 11 10 9 13 13 N 1.46498 * 109.46423 * 181.38369 * 12 11 10 14 14 C 1.34778 * 120.00215 * 154.97010 * 13 12 11 15 15 O 1.21279 * 120.00078 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00064 * 180.27736 * 14 13 12 17 17 C 1.50690 * 109.47188 * 179.72369 * 16 14 13 18 18 C 1.38465 * 120.01891 * 89.99907 * 17 16 14 19 19 F 1.35096 * 120.01884 * 0.02562 * 18 17 16 20 20 C 1.38446 * 119.96013 * 179.97438 * 18 17 16 21 21 C 1.38226 * 120.00362 * 0.02562 * 20 18 17 22 22 C 1.38203 * 120.03519 * 359.97438 * 21 20 18 23 23 C 1.38297 * 120.02114 * 269.72202 * 17 16 14 24 24 Cl 1.73604 * 119.99718 * 0.02562 * 23 17 16 25 25 C 1.53037 * 109.52948 * 61.36613 * 12 11 10 26 26 C 1.46931 * 120.63132 * 151.86183 * 9 7 2 27 27 H 0.97003 * 120.00287 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.58573 * 113.84372 * 10 9 7 29 29 H 1.08996 * 109.70511 * 353.48985 * 10 9 7 30 30 H 1.09005 * 109.49624 * 185.41098 * 11 10 9 31 31 H 1.09004 * 109.49360 * 65.32433 * 11 10 9 32 32 H 1.09004 * 109.45881 * 301.35798 * 12 11 10 33 33 H 0.97004 * 119.99537 * 334.97134 * 13 12 11 34 34 H 1.09001 * 109.46598 * 299.72558 * 16 14 13 35 35 H 1.08999 * 109.47025 * 59.71788 * 16 14 13 36 36 H 1.07995 * 119.99699 * 179.97438 * 20 18 17 37 37 H 1.08001 * 119.98054 * 180.02562 * 21 20 18 38 38 H 1.08008 * 119.97877 * 180.02562 * 22 21 20 39 39 H 1.09007 * 109.49715 * 58.58139 * 25 12 11 40 40 H 1.09004 * 109.50119 * 178.68053 * 25 12 11 41 41 H 1.08997 * 109.58469 * 246.15939 * 26 9 7 42 42 H 1.08994 * 109.58359 * 6.44321 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2225 -0.2719 9 7 1.3701 -2.3622 0.3465 10 6 0.2263 -2.3397 1.2684 11 6 0.4983 -3.3180 2.4155 12 6 0.8134 -4.6998 1.8383 13 7 1.0416 -5.6458 2.9334 14 6 0.8383 -6.9639 2.7389 15 8 0.4659 -7.3668 1.6573 16 6 1.0671 -7.9362 3.8672 17 6 0.7647 -9.3347 3.3942 18 6 1.7669 -10.1080 2.8330 19 9 3.0164 -9.6094 2.7097 20 6 1.4879 -11.3928 2.3994 21 6 0.2094 -11.9029 2.5263 22 6 -0.7908 -11.1310 3.0864 23 6 -0.5125 -9.8486 3.5257 24 17 -1.7681 -8.8823 4.2351 25 6 2.0687 -4.6162 0.9669 26 6 1.8143 -3.6530 -0.1969 27 1 -0.4851 0.8400 -0.0004 28 1 -0.6768 -2.6411 0.7377 29 1 0.0965 -1.3343 1.6686 30 1 -0.3822 -3.3828 3.0549 31 1 1.3480 -2.9656 3.0003 32 1 -0.0267 -5.0408 1.2331 33 1 1.3391 -5.3234 3.7986 34 1 2.1062 -7.8789 4.1911 35 1 0.4121 -7.6852 4.7015 36 1 2.2690 -11.9963 1.9612 37 1 -0.0077 -12.9054 2.1882 38 1 -1.7893 -11.5306 3.1855 39 1 2.9035 -4.2515 1.5655 40 1 2.3061 -5.6053 0.5750 41 1 1.0407 -4.0614 -0.8471 42 1 2.7334 -3.5131 -0.7657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110823869.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = -47.903381 kcal Electronic energy + Delta-G solvation = -27016.083184 eV Core-core repulsion = 22936.626349 eV Total energy + Delta-G solvation = -4079.456835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.20853 -40.13328 -39.10504 -37.29637 -36.76111 -34.40565 -33.30249 -32.07920 -30.76173 -30.17740 -29.52754 -27.83576 -24.94509 -23.21380 -22.80752 -22.21966 -21.64965 -20.18726 -19.27421 -18.07748 -17.24233 -17.16591 -16.66825 -16.32151 -15.77267 -15.54928 -15.06420 -14.95338 -14.72685 -14.00918 -13.84809 -13.76851 -13.67367 -13.53452 -13.19495 -13.03093 -12.81943 -12.45628 -12.35235 -11.91577 -11.74963 -11.66669 -11.45504 -11.17770 -11.10807 -10.84892 -10.73230 -10.47036 -10.26240 -10.03007 -9.90000 -9.71835 -9.52591 -9.11034 -9.01897 -8.70193 -8.45643 -6.67937 -5.79275 -3.21485 0.64532 0.71053 1.73247 2.76848 2.99543 3.36592 3.44876 3.46531 3.47485 3.90948 4.13939 4.38183 4.48182 4.49735 4.82617 4.86582 5.01493 5.09657 5.26176 5.34547 5.43436 5.51147 5.54140 5.60712 5.66445 5.72743 5.83054 5.89218 6.08848 6.28277 6.34488 6.35943 6.53949 6.57766 6.60491 6.80995 6.92823 7.00512 7.32125 7.59649 7.72150 7.80616 8.39060 8.44934 9.21100 9.84287 10.41498 11.29676 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023209 B = 0.002477 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.143810 B =11300.584021 C =11969.427816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.146 4.146 12 C 0.152 3.848 13 N -0.723 5.723 14 C 0.516 3.484 15 O -0.532 6.532 16 C -0.112 4.112 17 C -0.088 4.088 18 C 0.125 3.875 19 F -0.129 7.129 20 C -0.149 4.149 21 C -0.080 4.080 22 C -0.121 4.121 23 C 0.003 3.997 24 Cl -0.052 7.052 25 C -0.139 4.139 26 C 0.148 3.852 27 H 0.253 0.747 28 H 0.020 0.980 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.396 0.604 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.020 0.980 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 -23.727 11.831 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.049 3.951 13 N -0.373 5.373 14 C 0.301 3.699 15 O -0.409 6.409 16 C -0.152 4.152 17 C -0.090 4.090 18 C 0.106 3.894 19 F -0.107 7.107 20 C -0.168 4.168 21 C -0.099 4.099 22 C -0.139 4.139 23 C -0.024 4.024 24 Cl -0.023 7.023 25 C -0.179 4.179 26 C 0.021 3.979 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.110 0.890 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.229 0.771 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.453 -23.737 11.076 26.198 hybrid contribution 0.675 1.212 0.477 1.467 sum 0.222 -22.526 11.553 25.317 Atomic orbital electron populations 1.70035 1.05252 1.25404 1.54080 1.25058 0.95298 0.98436 1.00935 0.86227 0.79368 0.83945 0.77266 1.20266 1.21720 1.21580 1.19235 0.92602 0.84751 1.41468 0.91606 1.44102 1.35826 1.01654 1.49987 1.20730 0.88890 0.97906 0.87657 1.22535 1.00522 0.94728 1.00837 1.21042 0.98490 0.88204 0.87390 1.46299 1.68765 1.06320 1.15909 1.20160 0.77646 0.83040 0.89020 1.90721 1.45718 1.78137 1.26289 1.20704 1.05315 0.90194 0.98986 1.19112 0.92028 0.95899 1.01967 1.17273 0.79688 0.92621 0.99858 1.91527 1.37892 1.87715 1.93612 1.21223 0.98837 0.94353 1.02387 1.20945 0.91444 1.00106 0.97361 1.21086 1.00823 0.92378 0.99644 1.20518 0.88855 0.92859 1.00175 1.98391 1.50955 1.71189 1.81767 1.22371 0.97155 0.99509 0.98868 1.20870 0.97877 0.86532 0.92645 0.93661 0.96153 0.89032 0.92749 0.92161 0.90054 0.77081 0.87369 0.87090 0.84019 0.83983 0.84173 0.92328 0.92786 0.96220 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.19 11.19 55.49 0.62 -25.57 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.63 29.59 -169.99 -5.03 16.61 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 8 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -14.97 2.99 -172.32 -0.52 -15.48 16 10 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 11 C -0.15 -2.70 5.55 -26.62 -0.15 -2.84 16 12 C 0.15 2.69 2.42 -67.90 -0.16 2.52 16 13 N -0.72 -10.23 5.08 -53.77 -0.27 -10.51 16 14 C 0.52 7.60 7.79 -10.98 -0.09 7.52 16 15 O -0.53 -9.98 15.70 5.56 0.09 -9.89 16 16 C -0.11 -1.22 5.26 -29.04 -0.15 -1.37 16 17 C -0.09 -1.01 4.38 -104.52 -0.46 -1.47 16 18 C 0.13 1.41 7.24 -39.42 -0.29 1.12 16 19 F -0.13 -1.58 16.48 2.25 0.04 -1.54 16 20 C -0.15 -1.30 10.03 -39.51 -0.40 -1.69 16 21 C -0.08 -0.58 10.04 -39.60 -0.40 -0.98 16 22 C -0.12 -1.02 9.83 -39.54 -0.39 -1.41 16 23 C 0.00 0.03 6.31 -39.51 -0.25 -0.22 16 24 Cl -0.05 -0.55 27.29 -51.86 -1.42 -1.96 16 25 C -0.14 -2.60 5.65 -26.61 -0.15 -2.75 16 26 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16 27 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 2.40 6.06 -51.93 -0.31 2.09 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 33 H 0.40 4.41 8.60 -40.82 -0.35 4.05 16 34 H 0.11 0.99 7.64 -51.93 -0.40 0.59 16 35 H 0.11 1.00 6.89 -51.93 -0.36 0.64 16 36 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 39 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 1.21 7.93 -51.93 -0.41 0.79 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -32.61 364.38 -9.73 -42.34 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.58 Total: 1.86 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -3.15 Total: -1.34 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.17 Total: -51.55 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.61 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.42 Total: -1.96 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.61 -9.73 -42.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110823869.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.568 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds