Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99978 * 2 1 4 4 H 1.48495 * 109.47105 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46821 * 299.99500 * 3 2 1 6 6 H 1.48496 * 109.47346 * 59.99509 * 3 2 1 7 7 C 1.38809 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99730 * 163.06493 * 7 2 1 9 9 N 1.36935 * 120.00128 * 343.06533 * 7 2 1 10 10 C 1.46923 * 120.63046 * 331.83929 * 9 7 2 11 11 C 1.53191 * 108.77728 * 233.62599 * 10 9 7 12 12 C 1.53032 * 109.31714 * 305.37092 * 11 10 9 13 13 N 1.46498 * 109.46423 * 181.38369 * 12 11 10 14 14 C 1.34778 * 120.00215 * 154.97010 * 13 12 11 15 15 O 1.21279 * 120.00078 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00064 * 180.27736 * 14 13 12 17 17 C 1.50690 * 109.47188 * 179.72369 * 16 14 13 18 18 C 1.38465 * 120.01891 * 89.99907 * 17 16 14 19 19 F 1.35096 * 120.01884 * 0.02562 * 18 17 16 20 20 C 1.38446 * 119.96013 * 179.97438 * 18 17 16 21 21 C 1.38226 * 120.00362 * 0.02562 * 20 18 17 22 22 C 1.38203 * 120.03519 * 359.97438 * 21 20 18 23 23 C 1.38297 * 120.02114 * 269.72202 * 17 16 14 24 24 Cl 1.73604 * 119.99718 * 0.02562 * 23 17 16 25 25 C 1.53037 * 109.52948 * 61.36613 * 12 11 10 26 26 C 1.46931 * 120.63132 * 151.86183 * 9 7 2 27 27 H 0.97003 * 120.00287 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.58573 * 113.84372 * 10 9 7 29 29 H 1.08996 * 109.70511 * 353.48985 * 10 9 7 30 30 H 1.09005 * 109.49624 * 185.41098 * 11 10 9 31 31 H 1.09004 * 109.49360 * 65.32433 * 11 10 9 32 32 H 1.09004 * 109.45881 * 301.35798 * 12 11 10 33 33 H 0.97004 * 119.99537 * 334.97134 * 13 12 11 34 34 H 1.09001 * 109.46598 * 299.72558 * 16 14 13 35 35 H 1.08999 * 109.47025 * 59.71788 * 16 14 13 36 36 H 1.07995 * 119.99699 * 179.97438 * 20 18 17 37 37 H 1.08001 * 119.98054 * 180.02562 * 21 20 18 38 38 H 1.08008 * 119.97877 * 180.02562 * 22 21 20 39 39 H 1.09007 * 109.49715 * 58.58139 * 25 12 11 40 40 H 1.09004 * 109.50119 * 178.68053 * 25 12 11 41 41 H 1.08997 * 109.58469 * 246.15939 * 26 9 7 42 42 H 1.08994 * 109.58359 * 6.44321 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2225 -0.2719 9 7 1.3701 -2.3622 0.3465 10 6 0.2263 -2.3397 1.2684 11 6 0.4983 -3.3180 2.4155 12 6 0.8134 -4.6998 1.8383 13 7 1.0416 -5.6458 2.9334 14 6 0.8383 -6.9639 2.7389 15 8 0.4659 -7.3668 1.6573 16 6 1.0671 -7.9362 3.8672 17 6 0.7647 -9.3347 3.3942 18 6 1.7669 -10.1080 2.8330 19 9 3.0164 -9.6094 2.7097 20 6 1.4879 -11.3928 2.3994 21 6 0.2094 -11.9029 2.5263 22 6 -0.7908 -11.1310 3.0864 23 6 -0.5125 -9.8486 3.5257 24 17 -1.7681 -8.8823 4.2351 25 6 2.0687 -4.6162 0.9669 26 6 1.8143 -3.6530 -0.1969 27 1 -0.4851 0.8400 -0.0004 28 1 -0.6768 -2.6411 0.7377 29 1 0.0965 -1.3343 1.6686 30 1 -0.3822 -3.3828 3.0549 31 1 1.3480 -2.9656 3.0003 32 1 -0.0267 -5.0408 1.2331 33 1 1.3391 -5.3234 3.7986 34 1 2.1062 -7.8789 4.1911 35 1 0.4121 -7.6852 4.7015 36 1 2.2690 -11.9963 1.9612 37 1 -0.0077 -12.9054 2.1882 38 1 -1.7893 -11.5306 3.1855 39 1 2.9035 -4.2515 1.5655 40 1 2.3061 -5.6053 0.5750 41 1 1.0407 -4.0614 -0.8471 42 1 2.7334 -3.5131 -0.7657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110823869.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = -67.036525 kcal Electronic energy + Delta-G solvation = -27016.912859 eV Core-core repulsion = 22936.626349 eV Total energy + Delta-G solvation = -4080.286510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.03097 -41.21137 -40.04885 -38.88674 -37.50895 -36.01671 -34.25586 -33.76389 -31.84857 -31.43926 -31.25305 -28.83014 -26.78763 -24.17414 -23.92406 -23.82009 -22.91537 -21.42610 -20.92105 -18.98144 -18.74743 -18.02730 -17.92745 -17.42358 -16.86250 -16.64971 -16.48841 -16.07033 -15.77697 -15.59984 -15.37632 -14.99802 -14.74673 -14.67148 -14.53258 -14.32959 -14.06810 -13.99749 -13.40344 -13.21060 -13.04200 -12.70546 -12.62963 -12.54045 -12.46008 -12.38328 -12.23514 -12.01571 -11.91410 -11.89314 -11.57720 -11.38323 -10.97304 -10.58241 -10.02671 -9.87279 -9.73255 -8.72911 -7.89334 -5.35427 -0.04715 0.00660 0.98959 1.46849 1.48648 1.59635 1.62003 2.11117 2.50325 2.50861 3.20043 3.26644 3.36608 3.62701 3.68409 3.80773 3.88703 3.94856 4.04696 4.21376 4.30735 4.33407 4.39323 4.43616 4.52554 4.62036 4.78824 4.82503 4.85988 5.00901 5.02233 5.02893 5.08340 5.12979 5.20673 5.26745 5.44758 5.53397 5.63052 5.68989 5.70680 6.37265 6.57501 7.12737 7.25979 7.81776 8.35106 9.17985 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023209 B = 0.002477 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.143810 B =11300.584021 C =11969.427816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.263 4.263 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.179 3.821 11 C -0.128 4.128 12 C 0.164 3.836 13 N -0.712 5.712 14 C 0.516 3.484 15 O -0.575 6.575 16 C -0.104 4.104 17 C -0.110 4.110 18 C 0.099 3.901 19 F -0.141 7.141 20 C -0.150 4.150 21 C -0.070 4.070 22 C -0.122 4.122 23 C -0.014 4.014 24 Cl -0.059 7.059 25 C -0.123 4.123 26 C 0.145 3.855 27 H 0.251 0.749 28 H -0.007 1.007 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.414 0.586 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.163 0.837 37 H 0.180 0.820 38 H 0.162 0.838 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.005 0.995 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.847 -25.453 13.234 28.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.393 4.393 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.168 4.168 12 C 0.059 3.941 13 N -0.363 5.363 14 C 0.303 3.697 15 O -0.454 6.454 16 C -0.143 4.143 17 C -0.112 4.112 18 C 0.079 3.921 19 F -0.120 7.120 20 C -0.169 4.169 21 C -0.088 4.088 22 C -0.140 4.140 23 C -0.041 4.041 24 Cl -0.030 7.030 25 C -0.163 4.163 26 C 0.019 3.981 27 H 0.060 0.940 28 H 0.011 0.989 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.251 0.749 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.181 0.819 37 H 0.198 0.802 38 H 0.179 0.821 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.023 0.977 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.432 -25.485 12.522 28.399 hybrid contribution 0.366 1.638 -0.032 1.679 sum 0.798 -23.847 12.489 26.931 Atomic orbital electron populations 1.70191 1.06719 1.25926 1.55328 1.25834 0.96065 1.01580 1.01053 0.85176 0.78594 0.79642 0.76825 1.19077 1.22082 1.21340 1.19551 0.92870 0.85820 1.41109 0.91500 1.44356 1.35970 1.02165 1.50764 1.20551 0.87639 0.97772 0.88727 1.22256 1.02005 0.93605 0.98916 1.20616 0.97002 0.88451 0.88017 1.46030 1.68627 1.05866 1.15775 1.20811 0.76280 0.83239 0.89402 1.90702 1.47537 1.78800 1.28332 1.20684 1.06902 0.89056 0.97651 1.19237 0.92653 0.96178 1.03119 1.17620 0.79377 0.93862 1.01204 1.91487 1.38580 1.88038 1.93877 1.21593 1.00142 0.93591 1.01533 1.21407 0.90346 1.01372 0.95685 1.21473 1.02244 0.91649 0.98678 1.20742 0.88534 0.93773 1.01053 1.98383 1.51115 1.71567 1.81943 1.22163 0.97883 0.98480 0.97807 1.20950 0.97283 0.86014 0.93848 0.93984 0.98918 0.91788 0.90488 0.90989 0.92661 0.74887 0.85497 0.85253 0.81920 0.80243 0.82057 0.91422 0.92525 0.97672 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.58 11.19 21.65 0.24 -55.34 16 2 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 3 Si 0.97 44.79 29.59 68.60 2.03 46.81 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.26 -14.63 9.58 84.03 0.81 -13.82 16 8 H 0.07 3.63 7.89 -2.91 -0.02 3.60 16 9 N -0.61 -31.27 2.99 -699.11 -2.09 -33.36 16 10 C 0.18 8.69 5.30 86.36 0.46 9.15 16 11 C -0.13 -4.62 5.55 30.67 0.17 -4.45 16 12 C 0.16 5.70 2.42 45.01 0.11 5.81 16 13 N -0.71 -19.00 5.08 -442.42 -2.25 -21.25 16 14 C 0.52 14.64 7.79 87.66 0.68 15.32 16 15 O -0.57 -21.48 15.70 -3.03 -0.05 -21.53 16 16 C -0.10 -2.10 5.26 29.10 0.15 -1.94 16 17 C -0.11 -2.39 4.38 -19.80 -0.09 -2.48 16 18 C 0.10 2.10 7.24 22.37 0.16 2.27 16 19 F -0.14 -3.34 16.48 44.97 0.74 -2.60 16 20 C -0.15 -2.27 10.03 22.32 0.22 -2.05 16 21 C -0.07 -0.81 10.04 22.26 0.22 -0.58 16 22 C -0.12 -1.77 9.83 22.30 0.22 -1.55 16 23 C -0.01 -0.28 6.31 22.32 0.14 -0.14 16 24 Cl -0.06 -1.18 27.29 -2.72 -0.07 -1.25 16 25 C -0.12 -4.55 5.65 30.67 0.17 -4.37 16 26 C 0.15 6.47 6.52 86.36 0.56 7.03 16 27 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 28 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 29 H 0.06 3.45 6.06 -2.39 -0.01 3.44 16 30 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 31 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 32 H 0.06 2.25 7.58 -2.38 -0.02 2.23 16 33 H 0.41 8.13 8.60 -92.71 -0.80 7.33 16 34 H 0.13 2.06 7.64 -2.39 -0.02 2.04 16 35 H 0.13 2.09 6.89 -2.39 -0.02 2.08 16 36 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 38 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 40 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 Total: -1.00 -72.51 364.38 3.22 -69.28 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.26 Total: 13.42 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 4.41 Total: 5.80 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -4.10 Total: -109.94 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.05 Total: -21.53 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.74 Total: -2.60 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.07 Total: -1.25 kcal Total: -72.51 3.22 -69.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110823869.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.246 kcal (2) G-P(sol) polarization free energy of solvation -72.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds