Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86792 * 119.99996 * 2 1 4 4 H 1.48498 * 109.47246 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47583 * 299.99906 * 3 2 1 6 6 H 1.48504 * 109.47390 * 60.00041 * 3 2 1 7 7 C 1.38799 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99648 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00243 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99922 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47072 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99876 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00150 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99847 * 180.02562 * 13 11 10 15 15 C 1.53121 * 109.51730 * 204.99787 * 14 13 11 16 16 C 1.53041 * 109.27518 * 182.37698 * 15 14 13 17 17 N 1.46842 * 109.52641 * 59.17904 * 16 15 14 18 18 C 1.46899 * 111.00041 * 174.16189 * 17 16 15 19 19 C 1.50703 * 109.47107 * 169.99728 * 18 17 16 20 20 C 1.38427 * 122.53778 * 269.73352 * 19 18 17 21 21 C 1.33394 * 114.91955 * 179.75790 * 20 19 18 22 22 S 1.75880 * 109.58925 * 0.48270 * 21 20 19 23 23 C 1.33390 * 122.54183 * 90.02280 * 19 18 17 24 24 C 1.46851 * 111.19561 * 298.25631 * 17 16 15 25 25 C 1.53039 * 109.52490 * 61.74256 * 24 17 16 26 26 H 0.96998 * 120.00182 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47067 * 60.00198 * 10 9 7 28 28 H 1.09006 * 109.46754 * 300.00124 * 10 9 7 29 29 H 0.96996 * 120.00237 * 359.97438 * 13 11 10 30 30 H 1.08999 * 109.52415 * 325.11545 * 14 13 11 31 31 H 1.08994 * 109.50961 * 62.42899 * 15 14 13 32 32 H 1.09008 * 109.53352 * 302.33318 * 15 14 13 33 33 H 1.08996 * 109.46118 * 299.15547 * 16 15 14 34 34 H 1.09007 * 109.45259 * 179.18590 * 16 15 14 35 35 H 1.09002 * 109.47043 * 289.99708 * 18 17 16 36 36 H 1.09001 * 109.47354 * 49.99769 * 18 17 16 37 37 H 1.07995 * 122.53931 * 0.02562 * 20 19 18 38 38 H 1.07996 * 125.20359 * 180.20485 * 21 20 19 39 39 H 1.08000 * 125.19920 * 359.97438 * 23 19 18 40 40 H 1.08996 * 109.46471 * 181.76155 * 24 17 16 41 41 H 1.09004 * 109.45929 * 301.72754 * 24 17 16 42 42 H 1.08992 * 109.50519 * 180.88071 * 25 24 17 43 43 H 1.09003 * 109.50071 * 60.76201 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7910 -5.5023 -0.0011 13 7 2.8440 -6.3432 -0.0008 14 6 2.3302 -7.7151 -0.0019 15 6 3.3751 -8.6533 0.6086 16 6 2.8574 -10.0923 0.5505 17 7 2.5962 -10.4639 -0.8459 18 6 2.2299 -11.8824 -0.9534 19 6 1.7341 -12.1689 -2.3474 20 6 0.4000 -12.0599 -2.7003 21 6 0.1308 -12.3443 -3.9754 22 16 1.6153 -12.7914 -4.8059 23 6 2.5467 -12.5522 -3.3334 24 6 1.5616 -9.6068 -1.4388 25 6 2.0406 -8.1533 -1.4402 26 1 -0.4850 0.8400 0.0004 27 1 3.1243 -3.7314 0.8894 28 1 3.1244 -3.7313 -0.8906 29 1 3.8008 -6.1836 -0.0004 30 1 1.4127 -7.7610 0.5846 31 1 3.5542 -8.3725 1.6464 32 1 4.3055 -8.5782 0.0456 33 1 1.9348 -10.1698 1.1257 34 1 3.6053 -10.7644 0.9714 35 1 3.1033 -12.5001 -0.7443 36 1 1.4432 -12.1101 -0.2341 37 1 -0.3643 -11.7628 -1.9975 38 1 -0.8494 -12.3100 -4.4275 39 1 3.6135 -12.6934 -3.2414 40 1 1.3682 -9.9264 -2.4627 41 1 0.6451 -9.6866 -0.8543 42 1 1.2662 -7.5154 -1.8660 43 1 2.9496 -8.0703 -2.0360 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115117016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = -25.154623 kcal Electronic energy + Delta-G solvation = -24022.921624 eV Core-core repulsion = 20512.708132 eV Total energy + Delta-G solvation = -3510.213492 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.14077 -40.13974 -38.46069 -35.89448 -34.58866 -33.14105 -31.85816 -31.03973 -30.00234 -27.71325 -27.17035 -24.86732 -24.13596 -22.89922 -21.64690 -20.90293 -19.78597 -19.64314 -18.48004 -17.82635 -17.70564 -16.88745 -16.71027 -16.44665 -16.29143 -15.87076 -15.51359 -15.36141 -14.84015 -14.73904 -14.53227 -14.32322 -13.91972 -13.75849 -13.60087 -13.56260 -13.16278 -13.06658 -12.91965 -12.85470 -12.74360 -12.60388 -12.24306 -12.17767 -11.82712 -11.73640 -11.60594 -11.49177 -11.16182 -10.89018 -10.27437 -10.07333 -9.72653 -9.43129 -9.14483 -8.67085 -8.35181 -6.13165 0.12117 0.78632 1.09949 1.27087 1.41246 1.47133 1.58377 1.62231 1.69701 2.25566 2.30143 2.98986 3.04834 3.31896 3.70209 3.81386 3.95183 4.01660 4.06570 4.10767 4.23838 4.30453 4.36141 4.40529 4.50355 4.52184 4.53307 4.63814 4.70517 4.74392 4.78624 4.91885 4.95290 5.06041 5.13241 5.16329 5.27496 5.41844 5.47918 5.53879 5.54543 6.05086 6.12770 6.19792 6.54123 7.06201 7.27067 8.74331 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.021969 B = 0.001902 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.204490 B =14721.481874 C =15370.115405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.129 4.129 11 C 0.534 3.466 12 O -0.566 6.566 13 N -0.708 5.708 14 C 0.145 3.855 15 C -0.112 4.112 16 C 0.059 3.941 17 N -0.533 5.533 18 C 0.116 3.884 19 C -0.113 4.113 20 C -0.142 4.142 21 C -0.220 4.220 22 S 0.090 5.910 23 C -0.194 4.194 24 C 0.068 3.932 25 C -0.121 4.121 26 H 0.271 0.729 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.416 0.584 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.033 0.967 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.047 0.953 37 H 0.139 0.861 38 H 0.176 0.824 39 H 0.179 0.821 40 H 0.079 0.921 41 H 0.025 0.975 42 H 0.041 0.959 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.396 -29.716 -3.826 31.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.692 4.692 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.280 4.280 11 C 0.320 3.680 12 O -0.444 6.444 13 N -0.361 5.361 14 C 0.041 3.959 15 C -0.150 4.150 16 C -0.069 4.069 17 N -0.258 5.258 18 C -0.013 4.013 19 C -0.126 4.126 20 C -0.172 4.172 21 C -0.355 4.355 22 S 0.354 5.646 23 C -0.330 4.330 24 C -0.061 4.061 25 C -0.160 4.160 26 H 0.080 0.920 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.253 0.747 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.051 0.949 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.065 0.935 37 H 0.157 0.843 38 H 0.194 0.806 39 H 0.197 0.803 40 H 0.097 0.903 41 H 0.043 0.957 42 H 0.060 0.940 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.053 -30.348 -5.573 32.156 hybrid contribution 0.376 1.848 1.680 2.525 sum 9.429 -28.501 -3.893 30.271 Atomic orbital electron populations 1.70193 1.07984 1.28539 1.48111 1.26151 0.95996 1.03387 0.93780 0.84887 0.78615 0.76257 0.78071 1.17982 1.19943 1.19915 1.23238 0.95345 0.91959 1.58698 0.89894 1.85583 1.10681 0.99304 1.97041 1.23375 1.03490 0.94413 1.06751 1.20080 0.86302 0.86707 0.74908 1.90684 1.17452 1.86083 1.50214 1.45834 1.10223 1.04829 1.75258 1.21053 0.98025 0.80431 0.96437 1.21813 0.98195 0.93007 1.01970 1.22108 1.00714 0.96200 0.87870 1.62138 1.43028 1.02606 1.18011 1.20818 1.00444 0.88814 0.91259 1.18902 0.92832 1.03474 0.97371 1.20293 0.96810 1.03490 0.96635 1.25838 1.02700 1.08905 0.98044 1.84337 0.99283 1.67349 1.13656 1.25711 1.04215 1.07903 0.95209 1.21962 0.92258 0.91698 1.00147 1.21896 1.01585 0.95629 0.96903 0.92008 0.87158 0.87346 0.74671 0.92400 0.89526 0.89104 0.94885 0.87670 0.88024 0.93476 0.84282 0.80636 0.80336 0.90293 0.95668 0.93969 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.41 13.22 21.65 0.29 -56.12 16 2 C 0.01 0.65 5.49 84.86 0.47 1.12 16 3 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.54 -31.30 9.50 67.95 0.65 -30.66 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 10 C -0.13 -5.16 6.16 71.23 0.44 -4.72 16 11 C 0.53 19.95 7.82 87.66 0.69 20.64 16 12 O -0.57 -26.63 15.52 -3.03 -0.05 -26.68 16 13 N -0.71 -18.09 5.08 -442.15 -2.25 -20.34 16 14 C 0.15 3.36 2.52 45.07 0.11 3.47 16 15 C -0.11 -1.64 5.57 30.65 0.17 -1.46 16 16 C 0.06 0.78 5.42 86.33 0.47 1.24 16 17 N -0.53 -8.18 4.80 -900.91 -4.32 -12.50 16 18 C 0.12 1.47 5.54 85.56 0.47 1.95 16 19 C -0.11 -1.67 3.98 -20.92 -0.08 -1.75 16 20 C -0.14 -2.20 8.21 21.22 0.17 -2.03 16 21 C -0.22 -3.22 11.23 66.72 0.75 -2.47 16 22 S 0.09 1.26 23.34 -56.49 -1.32 -0.06 16 23 C -0.19 -2.67 10.98 66.72 0.73 -1.94 16 24 C 0.07 1.36 4.66 86.33 0.40 1.76 16 25 C -0.12 -2.87 5.68 30.65 0.17 -2.70 16 26 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 27 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 28 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 29 H 0.42 7.64 8.61 -92.71 -0.80 6.84 16 30 H 0.06 1.68 7.58 -2.39 -0.02 1.66 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.11 0.92 8.12 -2.38 -0.02 0.90 16 35 H 0.10 0.96 8.12 -2.39 -0.02 0.94 16 36 H 0.05 0.58 8.07 -2.39 -0.02 0.57 16 37 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.18 1.98 8.06 -2.91 -0.02 1.95 16 39 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.08 1.66 5.66 -2.39 -0.01 1.64 16 41 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -76.34 377.74 -0.96 -77.30 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.21 Total: 19.83 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 5.61 Total: -17.53 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -6.29 Total: -88.97 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.05 Total: -26.68 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -7.34 SS G_CDS: -2.48 Total: -9.82 kcal Total: -76.34 -0.96 -77.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115117016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.150 kcal (2) G-P(sol) polarization free energy of solvation -76.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds