Wall clock time and date at job start Sat Apr 11 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 N 1.49347 * 108.33421 * 2 1 4 4 O 1.42098 * 114.65367 * 121.10702 * 2 1 3 5 5 C 1.76206 * 108.33110 * 242.21151 * 2 1 3 6 6 C 1.38283 * 119.92645 * 90.00209 * 5 2 1 7 7 C 1.38114 * 120.06924 * 179.97438 * 6 5 2 8 8 C 1.38864 * 119.92835 * 0.02562 * 7 6 5 9 9 N 1.39945 * 120.06741 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99670 * 146.76427 * 9 8 7 11 11 O 1.21588 * 120.00570 * 354.89892 * 10 9 8 12 12 N 1.34782 * 120.00046 * 174.89055 * 10 9 8 13 13 C 1.46493 * 120.00125 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47078 * 180.02562 * 13 12 10 15 15 O 1.21296 * 120.00155 * 0.02562 * 14 13 12 16 16 N 1.34784 * 119.99946 * 180.02562 * 14 13 12 17 17 C 1.37091 * 119.99813 * 180.02562 * 16 14 13 18 18 H 1.08003 * 120.00320 * 359.97438 * 17 16 14 19 19 C 1.38947 * 120.00201 * 179.97438 * 17 16 14 20 20 N 1.31418 * 119.99663 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00242 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47403 * 59.99889 * 21 19 17 23 23 H 1.48508 * 109.47049 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47131 * 299.99422 * 21 19 17 25 25 C 1.38861 * 119.85955 * 0.26887 * 8 7 6 26 26 C 1.38112 * 119.93247 * 359.41006 * 25 8 7 27 27 H 1.09006 * 109.47393 * 178.89699 * 1 2 3 28 28 H 1.08999 * 109.47269 * 298.89071 * 1 2 3 29 29 H 1.09002 * 109.47344 * 58.89218 * 1 2 3 30 30 H 0.97003 * 120.00346 * 62.46928 * 3 2 1 31 31 H 1.08004 * 119.96841 * 359.97438 * 6 5 2 32 32 H 1.07997 * 120.03654 * 180.02562 * 7 6 5 33 33 H 0.96998 * 120.00022 * 327.04435 * 9 8 7 34 34 H 0.97003 * 119.99678 * 0.02562 * 12 10 9 35 35 H 1.08993 * 109.47693 * 300.00490 * 13 12 10 36 36 H 1.09002 * 109.46858 * 60.01105 * 13 12 10 37 37 H 0.96993 * 119.99665 * 359.97438 * 16 14 13 38 38 H 0.96996 * 119.99758 * 179.97438 * 20 19 17 39 39 H 1.08003 * 120.03334 * 179.70311 * 25 8 7 40 40 H 1.08002 * 119.96812 * 180.31455 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 7 2.2837 1.4177 0.0000 4 8 2.4067 -0.6672 1.1057 5 6 2.3681 -0.7798 -1.4797 6 6 2.5852 -0.0249 -2.6178 7 6 3.0200 -0.6330 -3.7791 8 6 3.2388 -2.0040 -3.8032 9 7 3.6800 -2.6231 -4.9782 10 6 4.4991 -3.6913 -4.9104 11 8 4.9292 -4.0604 -3.8347 12 7 4.8414 -4.3505 -6.0350 13 6 5.7322 -5.5112 -5.9614 14 6 5.9560 -6.0612 -7.3465 15 8 5.4242 -5.5351 -8.3013 16 7 6.7473 -7.1378 -7.5243 17 6 6.9513 -7.6379 -8.7844 18 1 6.4777 -7.1695 -9.6345 19 6 7.7673 -8.7474 -8.9678 20 7 8.3440 -9.3171 -7.9334 21 14 8.0448 -9.4292 -10.6846 22 1 8.6636 -8.3837 -11.5385 23 1 8.9483 -10.6055 -10.6101 24 1 6.7435 -9.8404 -11.2702 25 6 3.0141 -2.7602 -2.6604 26 6 2.5856 -2.1452 -1.5004 27 1 -0.3634 -1.0275 -0.0198 28 1 -0.3634 0.4965 0.8997 29 1 -0.3634 0.5309 -0.8799 30 1 2.0677 2.0002 0.7449 31 1 2.4144 1.0414 -2.5986 32 1 3.1898 -0.0428 -4.6675 33 1 3.3995 -2.2810 -5.8414 34 1 4.4986 -4.0559 -6.8933 35 1 6.6875 -5.2095 -5.5320 36 1 5.2780 -6.2785 -5.3345 37 1 7.1728 -7.5582 -6.7608 38 1 8.9134 -10.0918 -8.0614 39 1 3.1788 -3.8275 -2.6774 40 1 2.4155 -2.7320 -0.6098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672380286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:09 Heat of formation + Delta-G solvation = -51.853124 kcal Electronic energy + Delta-G solvation = -25552.124033 eV Core-core repulsion = 21494.459592 eV Total energy + Delta-G solvation = -4057.664440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.93121 -40.41623 -39.65446 -37.26299 -36.34220 -36.04986 -35.42633 -33.38250 -33.06539 -32.00885 -31.26031 -29.98069 -29.02442 -26.47993 -24.42094 -24.00548 -22.05131 -21.41081 -20.17269 -19.97811 -19.79577 -18.93206 -17.77916 -17.55411 -17.35738 -16.97379 -16.68158 -16.42578 -16.29740 -15.99239 -15.80240 -15.58558 -15.40868 -15.13035 -14.48359 -14.33487 -14.18907 -13.99419 -13.98350 -13.72764 -13.64305 -13.53911 -12.90527 -12.72220 -12.60092 -12.47058 -12.14317 -12.06672 -11.79468 -11.56314 -11.43777 -10.57458 -10.49949 -10.36110 -10.11047 -10.09859 -9.95500 -9.50113 -8.51259 -6.01564 -1.09599 -0.33784 0.26114 1.27832 1.38033 1.44000 1.54493 1.76404 1.90835 2.01425 2.27576 2.51403 2.85019 2.90244 3.16167 3.17323 3.49821 3.69680 3.85991 4.13362 4.16309 4.19803 4.21824 4.34240 4.40524 4.42664 4.44732 4.76067 4.89847 5.00846 5.01623 5.10757 5.16605 5.28684 5.38058 5.75548 5.78322 5.91294 6.46956 6.50417 6.77077 7.02992 7.24747 7.43961 7.93277 8.65160 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.042847 B = 0.001658 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.329853 B =16878.932727 C =17242.284974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.424 3.576 3 N -1.321 6.321 4 O -1.020 7.020 5 C -0.593 4.593 6 C 0.008 3.992 7 C -0.160 4.160 8 C 0.218 3.782 9 N -0.672 5.672 10 C 0.705 3.295 11 O -0.605 6.605 12 N -0.712 5.712 13 C 0.140 3.860 14 C 0.433 3.567 15 O -0.623 6.623 16 N -0.558 5.558 17 C -0.338 4.338 18 H 0.088 0.912 19 C -0.010 4.010 20 N -0.915 5.915 21 Si 0.997 3.003 22 H -0.270 1.270 23 H -0.273 1.273 24 H -0.269 1.269 25 C -0.159 4.159 26 C -0.019 4.019 27 H 0.132 0.868 28 H 0.138 0.862 29 H 0.152 0.848 30 H 0.391 0.609 31 H 0.176 0.824 32 H 0.171 0.829 33 H 0.430 0.570 34 H 0.415 0.585 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.399 0.601 38 H 0.280 0.720 39 H 0.131 0.869 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.744 18.306 11.173 27.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.611 3.389 3 N -1.147 6.147 4 O -1.006 7.006 5 C -0.690 4.690 6 C -0.012 4.012 7 C -0.182 4.182 8 C 0.121 3.879 9 N -0.320 5.320 10 C 0.406 3.594 11 O -0.484 6.484 12 N -0.369 5.369 13 C 0.012 3.988 14 C 0.220 3.780 15 O -0.512 6.512 16 N -0.194 5.194 17 C -0.467 4.467 18 H 0.106 0.894 19 C -0.211 4.211 20 N -0.555 5.555 21 Si 0.820 3.180 22 H -0.195 1.195 23 H -0.198 1.198 24 H -0.195 1.195 25 C -0.180 4.180 26 C -0.039 4.039 27 H 0.151 0.849 28 H 0.156 0.844 29 H 0.171 0.829 30 H 0.219 0.781 31 H 0.194 0.806 32 H 0.188 0.812 33 H 0.269 0.731 34 H 0.253 0.747 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.149 0.851 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.766 17.875 11.561 27.097 hybrid contribution -0.266 -0.851 -0.807 1.203 sum -17.032 17.023 10.754 26.373 Atomic orbital electron populations 1.30601 1.24667 1.12416 1.12987 1.08139 0.79884 0.77090 0.73755 1.71775 1.64156 1.25232 1.53575 1.93437 1.74958 1.81354 1.50805 1.28237 1.22727 1.03069 1.15006 1.21116 0.89925 1.00999 0.89142 1.21323 1.04512 0.91269 1.01096 1.18059 0.91648 0.92172 0.86018 1.42559 1.49412 1.30607 1.09436 1.15869 0.79354 0.80172 0.84038 1.90955 1.59441 1.69603 1.28442 1.44659 1.51674 1.31325 1.09265 1.20660 0.95595 0.88453 0.94139 1.20375 0.83489 0.83229 0.90914 1.90475 1.54635 1.62483 1.43572 1.41827 1.41932 1.26012 1.09602 1.19702 1.28963 1.11997 0.86045 0.89423 1.26126 0.95403 0.96301 1.03295 1.69674 1.31278 1.22674 1.31901 0.84929 0.78436 0.77731 0.76907 1.19509 1.19797 1.19452 1.21267 1.02407 1.01268 0.93104 1.20856 0.92396 0.92551 0.98119 0.84911 0.84379 0.82924 0.78102 0.80649 0.81160 0.73059 0.74665 0.88718 0.88475 0.76677 0.91083 0.85076 0.83262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.87 10.93 113.37 1.24 -1.63 16 2 S 2.42 34.36 5.10 -56.49 -0.29 34.07 16 3 N -1.32 -22.83 13.44 37.02 0.50 -22.33 16 4 O -1.02 -25.93 17.82 -148.98 -2.65 -28.59 16 5 C -0.59 -9.29 5.89 22.29 0.13 -9.16 16 6 C 0.01 0.10 9.54 22.25 0.21 0.31 16 7 C -0.16 -2.15 9.96 22.39 0.22 -1.93 16 8 C 0.22 4.22 6.28 38.14 0.24 4.46 16 9 N -0.67 -12.87 5.35 -317.18 -1.70 -14.56 16 10 C 0.71 19.49 8.30 179.05 1.49 20.98 16 11 O -0.61 -20.89 14.03 -3.99 -0.06 -20.95 16 12 N -0.71 -20.47 5.53 -482.31 -2.67 -23.14 16 13 C 0.14 4.68 6.15 85.64 0.53 5.21 16 14 C 0.43 18.79 7.85 87.66 0.69 19.47 16 15 O -0.62 -30.27 15.24 -3.08 -0.05 -30.32 16 16 N -0.56 -26.92 5.29 -306.97 -1.62 -28.54 16 17 C -0.34 -18.03 9.68 84.04 0.81 -17.22 16 18 H 0.09 4.90 7.16 -2.91 -0.02 4.88 16 19 C -0.01 -0.53 5.50 84.92 0.47 -0.06 16 20 N -0.92 -47.67 13.05 21.66 0.28 -47.39 16 21 Si 1.00 40.74 29.55 68.60 2.03 42.77 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 24 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 25 C -0.16 -3.53 8.65 22.39 0.19 -3.34 16 26 C -0.02 -0.35 9.57 22.25 0.21 -0.14 16 27 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.15 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.39 5.95 8.92 -104.94 -0.94 5.02 16 31 H 0.18 1.44 7.75 -2.91 -0.02 1.42 16 32 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 33 H 0.43 5.16 8.83 -92.71 -0.82 4.34 16 34 H 0.41 11.29 7.46 -92.71 -0.69 10.60 16 35 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.40 18.54 7.90 -92.71 -0.73 17.81 16 38 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 39 H 0.13 3.41 6.42 -2.91 -0.02 3.39 16 40 H 0.15 2.39 7.98 -2.91 -0.02 2.37 16 Total: -1.00 -79.82 363.54 -1.82 -81.64 By element: Atomic # 1 Polarization: 42.41 SS G_CDS: -2.03 Total: 40.37 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 6.43 Total: 16.95 kcal Atomic # 7 Polarization: -130.76 SS G_CDS: -5.21 Total: -135.96 kcal Atomic # 8 Polarization: -77.09 SS G_CDS: -2.76 Total: -79.85 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Atomic # 16 Polarization: 34.36 SS G_CDS: -0.29 Total: 34.07 kcal Total: -79.82 -1.82 -81.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672380286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.792 kcal (2) G-P(sol) polarization free energy of solvation -79.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds