Wall clock time and date at job start Sat Apr 11 2020 05:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 119.99984 * 2 1 4 4 N 1.46494 * 109.47695 * 124.99704 * 3 2 1 5 5 C 1.46502 * 120.00133 * 270.00052 * 4 3 2 6 6 C 1.50703 * 109.47024 * 269.99785 * 5 4 3 7 7 H 1.08001 * 119.99724 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99790 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00520 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99734 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47266 * 60.00112 * 10 8 6 12 12 H 1.48504 * 109.47362 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47482 * 300.00091 * 10 8 6 14 14 C 1.34783 * 120.00537 * 89.99255 * 4 3 2 15 15 O 1.21569 * 120.00186 * 180.02562 * 14 4 3 16 16 N 1.34777 * 119.99419 * 359.73233 * 14 4 3 17 17 C 1.39433 * 119.99965 * 174.93049 * 16 14 4 18 18 C 1.39389 * 120.15042 * 185.05691 * 17 16 14 19 19 C 1.38620 * 117.91098 * 179.73937 * 18 17 16 20 20 C 1.38778 * 118.02864 * 0.52436 * 19 18 17 21 21 S 1.76199 * 120.00100 * 179.75136 * 20 19 18 22 22 C 1.81401 * 104.45020 * 269.97940 * 21 20 19 23 23 O 1.42100 * 104.27706 * 26.04731 * 21 20 19 24 24 O 1.42099 * 104.27995 * 153.90438 * 21 20 19 25 25 N 1.31827 * 120.00210 * 359.72773 * 20 19 18 26 26 N 1.28356 * 122.27331 * 0.02562 * 25 20 19 27 27 H 1.07995 * 120.00350 * 180.02562 * 1 2 3 28 28 H 1.08004 * 120.00078 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.00078 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47349 * 4.99001 * 3 2 1 31 31 H 1.09010 * 109.46905 * 244.99793 * 3 2 1 32 32 H 1.09006 * 109.46723 * 29.99198 * 5 4 3 33 33 H 1.08995 * 109.47575 * 149.99535 * 5 4 3 34 34 H 0.96997 * 120.00402 * 180.02562 * 9 8 6 35 35 H 0.97005 * 120.00448 * 354.92938 * 16 14 4 36 36 H 1.07997 * 121.04724 * 359.97438 * 18 17 16 37 37 H 1.07997 * 120.98490 * 180.24981 * 19 18 17 38 38 H 1.08993 * 109.47202 * 59.99631 * 22 21 20 39 39 H 1.08992 * 109.47231 * 180.02562 * 22 21 20 40 40 H 1.09003 * 109.46708 * 299.99605 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5587 1.8652 2.4248 6 6 2.8441 3.3439 2.4802 7 1 3.3039 3.8371 1.6365 8 6 2.5182 4.0670 3.6079 9 7 1.9579 3.4666 4.6351 10 14 2.8726 5.8998 3.6769 11 1 2.1378 6.5876 2.5849 12 1 2.4305 6.4406 4.9874 13 1 4.3307 6.1286 3.5129 14 6 4.2497 0.8662 0.9825 15 8 5.0214 0.8882 1.9216 16 7 4.6481 0.3707 -0.2058 17 6 5.9757 -0.0132 -0.3913 18 6 6.4159 -0.4267 -1.6476 19 6 7.7462 -0.7928 -1.7808 20 6 8.5543 -0.7357 -0.6541 21 16 10.2517 -1.1957 -0.7631 22 6 10.2631 -2.9734 -0.4018 23 8 10.5918 -0.9611 -2.1227 24 8 10.8796 -0.4698 0.2848 25 7 8.0522 -0.3370 0.4977 26 7 6.8226 0.0080 0.6267 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1317 0.0894 31 1 2.6213 1.4025 -0.9315 32 1 1.4886 1.6969 2.5458 33 1 3.0988 1.3607 3.2259 34 1 1.7284 3.9754 5.4283 35 1 4.0113 0.2810 -0.9321 36 1 5.7426 -0.4572 -2.4914 37 1 8.1409 -1.1171 -2.7323 38 1 9.6515 -3.4973 -1.1362 39 1 11.2860 -3.3468 -0.4473 40 1 9.8586 -3.1439 0.5959 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674105741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:13 Heat of formation + Delta-G solvation = 17.251361 kcal Electronic energy + Delta-G solvation = -26858.194081 eV Core-core repulsion = 22803.526236 eV Total energy + Delta-G solvation = -4054.667845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.40452 -39.67589 -37.36436 -36.21274 -36.12693 -35.26417 -33.44915 -33.21725 -32.29782 -31.14996 -29.86479 -27.67525 -25.84106 -25.28204 -24.65674 -22.74810 -20.42370 -20.01409 -19.57650 -18.47563 -18.14234 -17.65379 -16.88273 -16.62095 -16.53599 -15.79075 -15.56981 -15.34303 -14.80155 -14.65651 -14.45232 -14.20668 -14.05806 -13.62425 -13.54785 -13.38274 -12.93827 -12.63729 -12.37697 -12.32940 -12.18930 -11.97075 -11.60772 -11.37141 -11.31151 -11.16094 -10.96076 -10.92935 -10.62570 -10.61036 -10.22420 -10.00532 -9.74022 -9.37835 -9.25967 -8.98268 -8.45726 -7.85164 -6.07346 -4.12546 -0.30383 0.37823 0.58316 2.20769 2.42747 2.60903 3.04939 3.31180 3.36492 3.40422 3.59490 3.64315 3.79823 4.03623 4.14878 4.28244 4.36929 4.41543 4.45396 4.58108 4.76794 4.98323 5.07245 5.19650 5.27065 5.27982 5.30211 5.35375 5.52481 5.82830 5.98295 6.28998 6.43437 6.61745 6.75351 7.16231 7.35927 7.46523 7.88453 8.16674 8.25074 8.53240 8.86057 9.03772 9.52807 11.00705 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.002911 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.280505 B = 9615.895704 C =11043.865143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.178 4.178 3 C 0.134 3.866 4 N -0.598 5.598 5 C 0.262 3.738 6 C -0.531 4.531 7 H 0.057 0.943 8 C 0.064 3.936 9 N -0.893 5.893 10 Si 0.899 3.101 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.681 3.319 15 O -0.509 6.509 16 N -0.661 5.661 17 C 0.371 3.629 18 C -0.178 4.178 19 C -0.016 4.016 20 C -0.546 4.546 21 S 2.522 3.478 22 C -0.646 4.646 23 O -0.934 6.934 24 O -0.911 6.911 25 N -0.102 5.102 26 N -0.229 5.229 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.265 0.735 35 H 0.413 0.587 36 H 0.160 0.840 37 H 0.168 0.832 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.797 -15.391 -18.134 24.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.198 4.198 3 C 0.010 3.990 4 N -0.333 5.333 5 C 0.144 3.856 6 C -0.570 4.570 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.382 3.618 15 O -0.378 6.378 16 N -0.310 5.310 17 C 0.132 3.868 18 C -0.211 4.211 19 C -0.045 4.045 20 C -0.774 4.774 21 S 2.695 3.305 22 C -0.797 4.797 23 O -0.930 6.930 24 O -0.908 6.908 25 N 0.049 4.951 26 N -0.083 5.083 27 H 0.114 0.886 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.252 0.748 36 H 0.177 0.823 37 H 0.186 0.814 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.968 -14.345 -15.730 22.731 hybrid contribution -1.472 0.280 -1.725 2.285 sum 6.496 -14.065 -17.455 23.339 Atomic orbital electron populations 1.23857 0.95773 1.01999 0.99385 1.23425 0.96637 0.98722 1.00974 1.20593 0.93361 0.96012 0.89066 1.47695 1.08378 1.62725 1.14517 1.19302 0.95374 0.93705 0.77246 1.21377 1.40957 0.93232 1.01451 0.92516 1.24904 0.94905 0.98834 0.95222 1.69910 1.41700 1.36358 1.05195 0.86554 0.78957 0.84725 0.77158 1.20307 1.21104 1.20080 1.16123 0.83922 0.79750 0.82011 1.91092 1.51609 1.58029 1.37030 1.43395 1.07114 1.63788 1.16750 1.20283 0.87062 0.88155 0.91278 1.21864 0.97683 1.04442 0.97130 1.21889 0.92371 0.91383 0.98825 1.34509 1.27097 1.17603 0.98230 1.05046 0.72662 0.77956 0.74831 1.30183 1.12013 1.24340 1.13156 1.93599 1.80656 1.84563 1.34203 1.93630 1.71925 1.68104 1.57176 1.73356 1.04716 0.97958 1.19071 1.73953 0.96501 1.14085 1.23811 0.88609 0.88060 0.87853 0.88615 0.91639 0.94502 0.93515 0.92555 0.74812 0.82271 0.81411 0.85045 0.84583 0.84430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 14.32 29.02 0.42 -1.53 16 2 C -0.18 -2.20 9.85 -36.03 -0.35 -2.55 16 3 C 0.13 1.93 5.56 -5.20 -0.03 1.90 16 4 N -0.60 -12.03 2.44 -182.18 -0.44 -12.47 16 5 C 0.26 6.67 5.16 -5.19 -0.03 6.65 16 6 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 7 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 9 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 10 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.68 14.07 8.24 -86.91 -0.72 13.36 16 15 O -0.51 -13.20 14.22 5.30 0.08 -13.13 16 16 N -0.66 -9.83 5.23 -15.70 -0.08 -9.91 16 17 C 0.37 5.59 7.50 -154.47 -1.16 4.43 16 18 C -0.18 -1.75 10.07 -39.01 -0.39 -2.14 16 19 C -0.02 -0.15 9.60 -39.24 -0.38 -0.53 16 20 C -0.55 -6.59 6.61 -17.35 -0.11 -6.70 16 21 S 2.52 23.20 5.87 -107.50 -0.63 22.57 16 22 C -0.65 -2.85 10.80 101.05 1.09 -1.75 16 23 O -0.93 -9.84 17.17 -57.54 -0.99 -10.82 16 24 O -0.91 -12.66 17.75 -57.54 -1.02 -13.68 16 25 N -0.10 -1.74 11.20 31.21 0.35 -1.39 16 26 N -0.23 -4.40 9.08 31.28 0.28 -4.12 16 27 H 0.10 0.92 8.06 -52.49 -0.42 0.50 16 28 H 0.10 1.13 7.84 -52.48 -0.41 0.72 16 29 H 0.10 1.19 8.06 -52.48 -0.42 0.77 16 30 H 0.10 1.46 7.72 -51.93 -0.40 1.05 16 31 H 0.07 0.73 6.46 -51.92 -0.34 0.39 16 32 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.41 4.25 6.53 -40.82 -0.27 3.98 16 36 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.17 0.87 7.64 -52.49 -0.40 0.47 16 38 H 0.13 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.14 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.14 0.60 8.14 -51.92 -0.42 0.18 16 LS Contribution 366.05 15.07 5.52 5.52 Total: -1.00 -41.48 366.05 -8.01 -49.49 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -4.70 Total: -1.06 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.08 Total: -2.33 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.84 Total: -53.49 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -1.93 Total: -37.63 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 23.20 SS G_CDS: -0.63 Total: 22.57 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -41.48 -8.01 -49.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674105741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.739 kcal (2) G-P(sol) polarization free energy of solvation -41.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds