Wall clock time and date at job start Sat Apr 11 2020 05:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46500 * 109.47170 * 175.00049 * 4 2 1 6 6 C 1.34777 * 120.00168 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99916 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99931 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47028 * 179.97438 * 8 6 5 10 10 C 1.76198 * 100.00098 * 179.97438 * 9 8 6 11 11 H 1.08007 * 119.99909 * 0.02562 * 10 9 8 12 12 C 1.38805 * 120.00376 * 180.02562 * 10 9 8 13 13 N 1.31632 * 119.99430 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00194 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47393 * 89.99772 * 14 12 10 16 16 H 1.48502 * 109.47024 * 210.00078 * 14 12 10 17 17 H 1.48505 * 109.47262 * 329.99610 * 14 12 10 18 18 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 19 19 C 1.34769 * 119.99686 * 84.99974 * 18 2 1 20 20 O 1.21591 * 120.00299 * 359.97438 * 19 18 2 21 21 C 1.47580 * 119.99551 * 180.02562 * 19 18 2 22 22 C 1.38048 * 119.72406 * 179.72861 * 21 19 18 23 23 N 1.34881 * 119.94670 * 179.74231 * 22 21 19 24 24 H 0.97000 * 120.30691 * 180.24675 * 23 22 21 25 25 C 1.34956 * 119.38214 * 0.52573 * 23 22 21 26 26 O 1.21867 * 120.27304 * 179.69870 * 25 23 22 27 27 C 1.41791 * 119.45963 * 359.72509 * 25 23 22 28 28 N 1.30600 * 120.03283 * 0.02562 * 27 25 23 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 33 33 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 34 34 H 0.97004 * 120.00188 * 0.02562 * 5 4 2 35 35 H 1.09002 * 109.47475 * 299.99556 * 8 6 5 36 36 H 1.09001 * 109.47706 * 59.99630 * 8 6 5 37 37 H 0.97003 * 119.99249 * 179.97438 * 13 12 10 38 38 H 0.97000 * 119.99634 * 265.00306 * 18 2 1 39 39 H 1.07995 * 120.03081 * 0.02562 * 22 21 19 40 40 H 1.08003 * 119.98350 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1729 -1.4292 2.1908 7 8 3.5698 -1.8841 3.1396 8 6 5.6748 -1.5368 2.1308 9 16 6.2781 -2.3901 3.6086 10 6 8.0098 -2.3773 3.2839 11 1 8.3862 -1.9240 2.3787 12 6 8.8905 -2.9497 4.1914 13 7 8.4318 -3.5017 5.2948 14 14 10.7264 -2.9355 3.8474 15 1 11.3277 -1.7040 4.4193 16 1 11.3558 -4.1283 4.4690 17 1 10.9555 -2.9629 2.3804 18 7 2.0184 -0.6906 -1.1962 19 6 2.1472 -0.0183 -2.3570 20 8 1.8575 1.1614 -2.4118 21 6 2.6386 -0.7141 -3.5621 22 6 2.7630 -0.0214 -4.7497 23 7 3.2166 -0.6516 -5.8525 24 1 3.3094 -0.1690 -6.6888 25 6 3.5348 -1.9613 -5.7830 26 8 3.9410 -2.5481 -6.7709 27 6 3.3922 -2.6492 -4.5514 28 7 2.9555 -2.0160 -3.4959 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7516 -0.1583 2.1369 33 1 1.6053 -1.7198 1.2952 34 1 3.9825 -0.4622 0.4320 35 1 5.9637 -2.0991 1.2428 36 1 6.1093 -0.5381 2.0856 37 1 9.0472 -3.9021 5.9288 38 1 2.2491 -1.6318 -1.1525 39 1 2.5016 1.0255 -4.7946 40 1 3.6439 -3.6974 -4.4863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689462418.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:20 Heat of formation + Delta-G solvation = -66.887791 kcal Electronic energy + Delta-G solvation = -25827.964281 eV Core-core repulsion = 21769.647888 eV Total energy + Delta-G solvation = -4058.316392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.34132 -40.26341 -39.13075 -38.03382 -36.55109 -35.85596 -33.68200 -32.42745 -31.83436 -30.60559 -29.36840 -26.13521 -26.00516 -25.42778 -25.11443 -22.66861 -21.12366 -20.35932 -19.81544 -19.00507 -17.99170 -17.61790 -16.82110 -16.64505 -16.54450 -16.26618 -15.85713 -15.34882 -15.23509 -15.10904 -14.80304 -14.65667 -14.06678 -13.97838 -13.48696 -13.30569 -13.06863 -12.91631 -12.78366 -12.56128 -12.41688 -12.25153 -12.12043 -11.80764 -11.31631 -11.06281 -11.02394 -10.76104 -10.65884 -10.05372 -9.82086 -9.57419 -9.41674 -9.07297 -8.95199 -8.90539 -8.24018 -6.50024 -6.21763 -3.92180 -0.15198 0.62529 1.84988 2.30923 2.67656 3.01531 3.07511 3.14338 3.22572 3.28058 3.32005 3.49265 3.59168 3.70125 4.05088 4.20482 4.34278 4.37352 4.64274 4.80475 4.93830 5.13516 5.13861 5.25035 5.33409 5.39301 5.51415 5.52033 5.64388 5.71637 5.74603 5.88002 5.89170 6.09811 6.13844 6.53942 6.80205 7.01304 7.18450 7.59587 7.64851 7.76389 8.35256 8.57509 9.23736 10.85681 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010176 B = 0.002516 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.972800 B =11127.312439 C =13291.739920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.098 0.902 4 C 0.113 3.887 5 N -0.739 5.739 6 C 0.533 3.467 7 O -0.516 6.516 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.706 5.706 19 C 0.593 3.407 20 O -0.543 6.543 21 C -0.082 4.082 22 C 0.179 3.821 23 N -0.587 5.587 24 H 0.426 0.574 25 C 0.478 3.522 26 O -0.517 6.517 27 C 0.049 3.951 28 N -0.372 5.372 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.399 0.601 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.414 0.586 39 H 0.191 0.809 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.866 8.686 -22.062 28.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 H 0.116 0.884 4 C -0.012 4.012 5 N -0.395 5.395 6 C 0.319 3.681 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.358 5.358 19 C 0.379 3.621 20 O -0.421 6.421 21 C -0.205 4.205 22 C 0.042 3.958 23 N -0.220 5.220 24 H 0.267 0.733 25 C 0.273 3.727 26 O -0.391 6.391 27 C -0.142 4.142 28 N -0.087 5.087 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.233 0.767 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.251 0.749 39 H 0.208 0.792 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -16.947 7.958 -20.006 27.400 hybrid contribution 2.360 0.922 -2.808 3.782 sum -14.587 8.880 -22.814 28.497 Atomic orbital electron populations 1.22109 0.93815 1.02870 1.03144 1.21327 0.95111 0.97855 0.83046 0.88386 1.21617 0.81235 1.01448 0.96882 1.45984 1.06739 1.62069 1.24677 1.20302 0.89512 0.76690 0.81579 1.90708 1.69852 1.45966 1.32478 1.23530 0.93523 1.05676 1.07702 1.85384 1.04595 1.73106 1.20184 1.22866 0.91542 1.44264 1.09688 0.90957 1.24991 0.99584 0.94535 0.94471 1.70020 1.35398 1.35469 1.09404 0.86169 0.82930 0.77842 0.78563 1.20287 1.20747 1.19697 1.45878 1.66036 1.15088 1.08812 1.17171 0.77198 0.85599 0.82174 1.90826 1.51556 1.14942 1.84794 1.20363 1.14503 0.91172 0.94467 1.23226 0.87223 1.00065 0.85260 1.43722 1.52277 1.12597 1.13361 0.73336 1.18832 0.80231 0.81263 0.92423 1.91033 1.45293 1.65055 1.37699 1.24808 1.01262 1.02122 0.85996 1.67694 1.02771 1.07268 1.31012 0.90892 0.91583 0.91868 0.89804 0.90763 0.76741 0.89211 0.89280 0.92184 0.74888 0.79213 0.78638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.48 37.16 0.35 -0.75 16 2 C 0.13 1.05 2.73 -67.93 -0.19 0.86 16 3 H 0.10 0.86 7.58 -51.93 -0.39 0.46 16 4 C 0.11 1.14 5.23 -4.04 -0.02 1.12 16 5 N -0.74 -9.16 5.39 -60.30 -0.32 -9.48 16 6 C 0.53 9.53 7.85 -10.99 -0.09 9.45 16 7 O -0.52 -11.28 15.86 5.56 0.09 -11.19 16 8 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 11 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 14 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 18 N -0.71 -5.59 4.51 -54.83 -0.25 -5.84 16 19 C 0.59 5.08 7.75 -12.45 -0.10 4.99 16 20 O -0.54 -5.75 15.94 5.29 0.08 -5.66 16 21 C -0.08 -0.58 6.71 -83.11 -0.56 -1.14 16 22 C 0.18 0.78 10.77 -16.28 -0.18 0.61 16 23 N -0.59 -2.46 5.28 -14.19 -0.07 -2.54 16 24 H 0.43 0.64 8.92 -40.82 -0.36 0.28 16 25 C 0.48 3.56 7.74 -14.82 -0.11 3.45 16 26 O -0.52 -5.65 17.95 5.04 0.09 -5.56 16 27 C 0.05 0.34 11.23 -16.72 -0.19 0.15 16 28 N -0.37 -2.81 9.62 -9.34 -0.09 -2.90 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.40 4.18 8.14 -40.82 -0.33 3.84 16 35 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 36 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.41 3.24 7.92 -40.82 -0.32 2.91 16 39 H 0.19 0.38 7.58 -52.49 -0.40 -0.02 16 40 H 0.20 1.01 8.06 -52.48 -0.42 0.58 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -38.22 371.17 -6.77 -44.99 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -4.74 Total: 2.37 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -0.65 Total: 3.03 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.00 Total: -46.09 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: 0.26 Total: -22.41 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.22 -6.77 -44.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689462418.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.896 kcal (2) G-P(sol) polarization free energy of solvation -38.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds