Wall clock time and date at job start Sat Apr 11 2020 05:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46500 * 109.47170 * 175.00049 * 4 2 1 6 6 C 1.34777 * 120.00168 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99916 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99931 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47028 * 179.97438 * 8 6 5 10 10 C 1.76198 * 100.00098 * 179.97438 * 9 8 6 11 11 H 1.08007 * 119.99909 * 0.02562 * 10 9 8 12 12 C 1.38805 * 120.00376 * 180.02562 * 10 9 8 13 13 N 1.31632 * 119.99430 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00194 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47393 * 89.99772 * 14 12 10 16 16 H 1.48502 * 109.47024 * 210.00078 * 14 12 10 17 17 H 1.48505 * 109.47262 * 329.99610 * 14 12 10 18 18 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 19 19 C 1.34769 * 119.99686 * 84.99974 * 18 2 1 20 20 O 1.21591 * 120.00299 * 359.97438 * 19 18 2 21 21 C 1.47580 * 119.99551 * 180.02562 * 19 18 2 22 22 C 1.38048 * 119.72406 * 179.72861 * 21 19 18 23 23 N 1.34881 * 119.94670 * 179.74231 * 22 21 19 24 24 H 0.97000 * 120.30691 * 180.24675 * 23 22 21 25 25 C 1.34956 * 119.38214 * 0.52573 * 23 22 21 26 26 O 1.21867 * 120.27304 * 179.69870 * 25 23 22 27 27 C 1.41791 * 119.45963 * 359.72509 * 25 23 22 28 28 N 1.30600 * 120.03283 * 0.02562 * 27 25 23 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 33 33 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 34 34 H 0.97004 * 120.00188 * 0.02562 * 5 4 2 35 35 H 1.09002 * 109.47475 * 299.99556 * 8 6 5 36 36 H 1.09001 * 109.47706 * 59.99630 * 8 6 5 37 37 H 0.97003 * 119.99249 * 179.97438 * 13 12 10 38 38 H 0.97000 * 119.99634 * 265.00306 * 18 2 1 39 39 H 1.07995 * 120.03081 * 0.02562 * 22 21 19 40 40 H 1.08003 * 119.98350 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1729 -1.4292 2.1908 7 8 3.5698 -1.8841 3.1396 8 6 5.6748 -1.5368 2.1308 9 16 6.2781 -2.3901 3.6086 10 6 8.0098 -2.3773 3.2839 11 1 8.3862 -1.9240 2.3787 12 6 8.8905 -2.9497 4.1914 13 7 8.4318 -3.5017 5.2948 14 14 10.7264 -2.9355 3.8474 15 1 11.3277 -1.7040 4.4193 16 1 11.3558 -4.1283 4.4690 17 1 10.9555 -2.9629 2.3804 18 7 2.0184 -0.6906 -1.1962 19 6 2.1472 -0.0183 -2.3570 20 8 1.8575 1.1614 -2.4118 21 6 2.6386 -0.7141 -3.5621 22 6 2.7630 -0.0214 -4.7497 23 7 3.2166 -0.6516 -5.8525 24 1 3.3094 -0.1690 -6.6888 25 6 3.5348 -1.9613 -5.7830 26 8 3.9410 -2.5481 -6.7709 27 6 3.3922 -2.6492 -4.5514 28 7 2.9555 -2.0160 -3.4959 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7516 -0.1583 2.1369 33 1 1.6053 -1.7198 1.2952 34 1 3.9825 -0.4622 0.4320 35 1 5.9637 -2.0991 1.2428 36 1 6.1093 -0.5381 2.0856 37 1 9.0472 -3.9021 5.9288 38 1 2.2491 -1.6318 -1.1525 39 1 2.5016 1.0255 -4.7946 40 1 3.6439 -3.6974 -4.4863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689462418.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:20 Heat of formation + Delta-G solvation = -98.904334 kcal Electronic energy + Delta-G solvation = -25829.352622 eV Core-core repulsion = 21769.647888 eV Total energy + Delta-G solvation = -4059.704734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.86830 -41.05763 -40.36127 -38.68896 -37.42202 -36.37079 -34.77866 -34.56663 -32.57057 -31.32729 -30.64915 -27.72625 -26.83083 -26.54702 -25.73892 -23.30473 -21.83565 -21.68456 -20.41522 -19.81394 -19.52434 -18.36985 -17.77334 -17.55416 -17.26576 -17.15882 -16.87464 -16.81436 -16.41230 -15.99096 -15.85508 -15.71256 -15.34723 -14.79870 -14.60676 -14.49591 -14.16294 -13.92171 -13.80522 -13.43647 -13.21580 -13.15307 -12.92262 -12.90573 -12.88030 -12.75490 -12.59220 -12.02798 -11.71377 -11.34296 -11.13357 -10.96803 -10.61252 -10.26380 -10.22169 -10.12597 -9.43919 -8.64655 -8.33793 -6.11135 -0.59019 0.03869 1.27972 1.40204 1.42955 1.47832 1.58152 1.62914 1.69641 2.06241 2.27138 2.32259 2.59157 2.98790 3.00449 3.09437 3.33372 3.57920 3.66890 3.87072 3.98433 4.10641 4.20207 4.28860 4.31956 4.52855 4.61455 4.73536 4.78920 4.82439 5.01712 5.15775 5.24127 5.28199 5.41005 5.42981 5.46549 6.20832 6.26142 6.45308 6.46969 6.59748 7.07830 7.11755 7.23329 8.75367 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010176 B = 0.002516 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.972800 B =11127.312439 C =13291.739920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.142 3.858 3 H 0.096 0.904 4 C 0.114 3.886 5 N -0.713 5.713 6 C 0.537 3.463 7 O -0.561 6.561 8 C -0.131 4.131 9 S -0.147 6.147 10 C -0.546 4.546 11 H 0.081 0.919 12 C 0.014 3.986 13 N -0.911 5.911 14 Si 0.997 3.003 15 H -0.268 1.268 16 H -0.278 1.278 17 H -0.259 1.259 18 N -0.705 5.705 19 C 0.595 3.405 20 O -0.564 6.564 21 C -0.105 4.105 22 C 0.209 3.791 23 N -0.569 5.569 24 H 0.442 0.558 25 C 0.478 3.522 26 O -0.557 6.557 27 C 0.036 3.964 28 N -0.378 5.378 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.412 0.588 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.271 0.729 38 H 0.415 0.585 39 H 0.221 0.779 40 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.656 10.222 -24.125 30.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.038 3.962 3 H 0.114 0.886 4 C -0.010 4.010 5 N -0.367 5.367 6 C 0.323 3.677 7 O -0.439 6.439 8 C -0.283 4.283 9 S 0.080 5.920 10 C -0.694 4.694 11 H 0.099 0.901 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.819 3.181 15 H -0.194 1.194 16 H -0.203 1.203 17 H -0.183 1.183 18 N -0.356 5.356 19 C 0.382 3.618 20 O -0.444 6.444 21 C -0.229 4.229 22 C 0.071 3.929 23 N -0.202 5.202 24 H 0.285 0.715 25 C 0.274 3.726 26 O -0.435 6.435 27 C -0.154 4.154 28 N -0.094 5.094 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.248 0.752 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.253 0.747 39 H 0.238 0.762 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -16.759 9.528 -22.125 29.346 hybrid contribution 2.158 0.554 -2.241 3.160 sum -14.601 10.082 -24.366 30.142 Atomic orbital electron populations 1.22069 0.92628 1.03286 1.03449 1.21206 0.95836 0.97178 0.82015 0.88607 1.21766 0.79243 1.01860 0.98144 1.45712 1.07834 1.59844 1.23306 1.19963 0.88730 0.76978 0.82071 1.90701 1.70309 1.48370 1.34533 1.23378 0.95018 1.05646 1.04221 1.85533 1.05671 1.75066 1.25727 1.23201 0.91822 1.44305 1.10099 0.90055 1.26106 1.05116 0.93825 0.94050 1.70181 1.37355 1.36552 1.10633 0.84972 0.75992 0.78093 0.79042 1.19355 1.20299 1.18268 1.45874 1.65904 1.15093 1.08768 1.17295 0.76709 0.85322 0.82479 1.90817 1.52670 1.15758 1.85162 1.20304 1.16267 0.91363 0.94981 1.23553 0.84489 1.00793 0.84092 1.43607 1.50661 1.11777 1.14124 0.71472 1.18886 0.79727 0.82033 0.91968 1.91017 1.47422 1.66157 1.38884 1.24917 1.02014 1.02715 0.85753 1.67641 1.02727 1.07697 1.31308 0.89876 0.91964 0.91426 0.89801 0.90738 0.75204 0.87361 0.87520 0.91995 0.74750 0.76217 0.77733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.48 71.98 0.68 -1.15 16 2 C 0.14 1.99 2.73 44.99 0.12 2.12 16 3 H 0.10 1.46 7.58 -2.39 -0.02 1.45 16 4 C 0.11 2.11 5.23 86.38 0.45 2.56 16 5 N -0.71 -16.44 5.39 -463.07 -2.49 -18.93 16 6 C 0.54 18.80 7.85 87.66 0.69 19.49 16 7 O -0.56 -24.77 15.86 -3.02 -0.05 -24.82 16 8 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 9 S -0.15 -8.07 20.57 -56.49 -1.16 -9.23 16 10 C -0.55 -31.03 9.50 67.96 0.65 -30.38 16 11 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 12 C 0.01 0.78 5.49 84.86 0.47 1.25 16 13 N -0.91 -55.73 13.22 21.65 0.29 -55.44 16 14 Si 1.00 43.47 29.55 68.60 2.03 45.49 16 15 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 16 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 17 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 18 N -0.71 -9.84 4.51 -445.65 -2.01 -11.84 16 19 C 0.60 8.96 7.75 86.71 0.67 9.64 16 20 O -0.56 -10.64 15.94 -4.00 -0.06 -10.71 16 21 C -0.11 -1.28 6.71 41.21 0.28 -1.00 16 22 C 0.21 1.23 10.77 84.18 0.91 2.14 16 23 N -0.57 -3.47 5.28 -316.86 -1.67 -5.15 16 24 H 0.44 0.19 8.92 -92.71 -0.83 -0.64 16 25 C 0.48 6.59 7.74 85.09 0.66 7.25 16 26 O -0.56 -11.98 17.95 -4.88 -0.09 -12.07 16 27 C 0.04 0.46 11.23 85.75 0.96 1.43 16 28 N -0.38 -5.19 9.62 -183.46 -1.77 -6.96 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 34 H 0.41 7.61 8.14 -92.71 -0.75 6.86 16 35 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 36 H 0.11 3.75 8.14 -2.40 -0.02 3.74 16 37 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 38 H 0.42 5.79 7.92 -92.71 -0.73 5.05 16 39 H 0.22 0.02 7.58 -2.91 -0.02 0.00 16 40 H 0.21 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -84.74 371.17 -1.21 -85.94 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -1.19 Total: 15.02 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 6.97 Total: 8.69 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -7.66 Total: -98.32 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -0.20 Total: -47.59 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -1.16 Total: -9.23 kcal Total: -84.74 -1.21 -85.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689462418.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.962 kcal (2) G-P(sol) polarization free energy of solvation -84.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds