Wall clock time and date at job start Sat Apr 11 2020 05:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 119.99620 * 2 1 4 4 O 1.21287 * 119.99473 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00428 * 359.97438 * 3 2 1 6 6 S 1.81002 * 109.47066 * 180.02562 * 5 3 2 7 7 C 1.76203 * 99.99811 * 180.02562 * 6 5 3 8 8 H 1.08000 * 119.99956 * 0.02562 * 7 6 5 9 9 C 1.38796 * 120.00020 * 179.97438 * 7 6 5 10 10 N 1.31627 * 120.00010 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 119.99940 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47463 * 89.99500 * 11 9 7 13 13 H 1.48496 * 109.47024 * 209.99915 * 11 9 7 14 14 H 1.48499 * 109.46952 * 329.99365 * 11 9 7 15 15 C 1.46492 * 119.99903 * 179.97438 * 2 1 3 16 16 C 1.53772 * 113.69437 * 17.98440 * 15 2 1 17 17 C 1.53786 * 87.08360 * 89.12713 * 16 15 2 18 18 N 1.46497 * 113.69348 * 270.87813 * 17 16 15 19 19 C 1.34777 * 119.99696 * 256.50615 * 18 17 16 20 20 O 1.21500 * 120.00080 * 359.97438 * 19 18 17 21 21 C 1.48276 * 119.99810 * 179.97438 * 19 18 17 22 22 C 1.47486 * 128.71262 * 179.70097 * 21 19 18 23 23 N 1.30650 * 102.71833 * 179.90870 * 22 21 19 24 24 O 1.20839 * 109.61643 * 0.36177 * 23 22 21 25 25 N 1.20901 * 115.90786 * 359.74437 * 24 23 22 26 26 C 1.53778 * 113.61794 * 115.52602 * 15 2 1 27 27 H 1.09000 * 109.47150 * 264.65425 * 1 2 3 28 28 H 1.09004 * 109.47069 * 24.64870 * 1 2 3 29 29 H 1.09000 * 109.46797 * 144.64820 * 1 2 3 30 30 H 1.09004 * 109.47054 * 300.00311 * 5 3 2 31 31 H 1.09001 * 109.46761 * 60.00146 * 5 3 2 32 32 H 0.97001 * 119.99529 * 180.02562 * 10 9 7 33 33 H 1.09010 * 112.84989 * 246.71760 * 15 2 1 34 34 H 1.09004 * 113.62083 * 203.67583 * 16 15 2 35 35 H 1.08999 * 113.61731 * 334.57874 * 16 15 2 36 36 H 1.08998 * 113.61553 * 139.98060 * 17 16 15 37 37 H 0.96998 * 120.00325 * 76.49955 * 18 17 16 38 38 H 1.07993 * 128.64185 * 0.02692 * 22 21 19 39 39 H 1.09004 * 113.61249 * 25.33846 * 26 15 2 40 40 H 1.09000 * 113.61871 * 156.25136 * 26 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4724 -0.0006 6 16 2.5616 3.8481 -0.0012 7 6 1.4414 5.2083 -0.0010 8 1 0.3762 5.0305 -0.0002 9 6 1.9282 6.5081 -0.0009 10 7 1.0914 7.5242 -0.0012 11 14 3.7707 6.8155 -0.0015 12 1 4.2585 6.8972 -1.4018 13 1 4.0597 8.0927 0.6987 14 1 4.4588 5.7009 0.6980 15 6 2.1975 -1.2687 0.0006 16 6 1.3466 -2.4737 -0.4337 17 6 1.7820 -2.1618 -1.8752 18 7 0.8964 -1.2225 -2.5676 19 6 0.0192 -1.6751 -3.4854 20 8 -0.0366 -2.8620 -3.7388 21 6 -0.8776 -0.7244 -4.1858 22 6 -1.8943 -1.0045 -5.2168 23 7 -2.3777 0.1818 -5.4738 24 8 -1.8135 1.0059 -4.7936 25 7 -0.9620 0.5816 -4.0474 26 6 3.0313 -1.4992 -1.2708 27 1 -0.3633 -0.0957 1.0232 28 1 -0.3633 0.9341 -0.4286 29 1 -0.3633 -0.8382 -0.5946 30 1 0.7590 2.5299 -0.8908 31 1 0.7584 2.5303 0.8892 32 1 1.4316 8.4326 -0.0015 33 1 2.7530 -1.4363 0.9234 34 1 1.7192 -3.4282 -0.0618 35 1 0.2787 -2.3390 -0.2613 36 1 2.0021 -3.0505 -2.4668 37 1 0.9411 -0.2749 -2.3655 38 1 -2.1717 -1.9541 -5.6500 39 1 3.3236 -0.5777 -1.7743 40 1 3.8645 -2.1873 -1.1277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701907980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:32 Heat of formation + Delta-G solvation = 90.925249 kcal Electronic energy + Delta-G solvation = -27439.660124 eV Core-core repulsion = 23388.187019 eV Total energy + Delta-G solvation = -4051.473105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -47.26673 -41.27972 -39.62330 -38.01110 -35.19541 -34.84777 -34.68609 -33.41757 -32.45478 -29.43218 -27.65051 -26.88460 -25.66478 -25.61862 -24.61220 -24.07001 -21.69281 -20.53786 -19.36365 -19.17450 -18.52799 -18.09183 -17.62790 -16.99918 -16.52346 -16.13459 -16.02446 -15.43091 -15.29735 -14.98881 -14.78451 -14.54533 -13.95060 -13.47962 -13.34572 -13.16184 -13.05569 -12.82076 -12.69623 -12.30977 -12.25951 -12.10500 -11.95492 -11.71998 -11.28241 -11.22483 -11.13319 -11.02764 -10.89364 -10.77854 -10.62487 -9.87887 -9.61144 -9.50730 -9.02183 -8.72354 -8.52768 -6.95052 -6.30358 -4.02678 0.35515 0.95811 2.15452 2.45845 2.59364 2.81053 3.00344 3.09029 3.12138 3.31420 3.48215 3.52296 3.55314 3.99198 4.15882 4.30140 4.32401 4.38666 4.45728 4.66738 4.74085 4.89291 4.93938 5.08184 5.09394 5.21467 5.26552 5.32991 5.39861 5.47563 5.58630 5.67022 5.75004 5.76590 5.94539 5.95865 6.50097 6.84947 7.28595 7.46706 7.92608 8.04597 8.31574 8.40407 9.15737 10.78867 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010928 B = 0.003659 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.521262 B = 7650.164394 C = 9562.799832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.612 5.612 3 C 0.531 3.469 4 O -0.509 6.509 5 C -0.123 4.123 6 S -0.141 6.141 7 C -0.521 4.521 8 H 0.088 0.912 9 C 0.097 3.903 10 N -0.879 5.879 11 Si 0.855 3.145 12 H -0.267 1.267 13 H -0.274 1.274 14 H -0.236 1.236 15 C 0.126 3.874 16 C -0.157 4.157 17 C 0.118 3.882 18 N -0.691 5.691 19 C 0.611 3.389 20 O -0.513 6.513 21 C -0.052 4.052 22 C 0.038 3.962 23 N -0.351 5.351 24 O 0.351 5.649 25 N -0.311 5.311 26 C -0.149 4.149 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.271 0.729 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.413 0.587 38 H 0.228 0.772 39 H 0.087 0.913 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 -22.732 -5.550 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.349 5.349 3 C 0.319 3.681 4 O -0.382 6.382 5 C -0.273 4.273 6 S 0.085 5.915 7 C -0.669 4.669 8 H 0.107 0.893 9 C -0.112 4.112 10 N -0.516 5.516 11 Si 0.680 3.320 12 H -0.192 1.192 13 H -0.199 1.199 14 H -0.160 1.160 15 C 0.022 3.978 16 C -0.195 4.195 17 C 0.013 3.987 18 N -0.343 5.343 19 C 0.393 3.607 20 O -0.387 6.387 21 C -0.217 4.217 22 C -0.148 4.148 23 N -0.074 5.074 24 O 0.123 5.877 25 N -0.029 5.029 26 C -0.188 4.188 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.127 0.873 35 H 0.103 0.897 36 H 0.128 0.872 37 H 0.250 0.750 38 H 0.244 0.756 39 H 0.106 0.894 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.141 -22.227 -5.730 23.168 hybrid contribution -0.720 -0.003 0.123 0.731 sum -3.862 -22.230 -5.607 23.249 Atomic orbital electron populations 1.22012 0.79720 1.03571 1.02516 1.47684 1.06590 1.04869 1.75797 1.20351 0.88000 0.84304 0.75443 1.90708 1.13528 1.86759 1.47241 1.23344 1.03193 0.95106 1.05686 1.84785 1.11806 0.97479 1.97418 1.22293 0.94843 0.90837 1.58881 0.89349 1.24694 0.98441 0.94875 0.93166 1.69936 1.34776 0.98890 1.47966 0.86756 0.85448 0.79841 0.79927 1.19210 1.19933 1.15962 1.21868 0.93745 0.83385 0.98832 1.23815 1.01583 0.98478 0.95643 1.22041 0.90538 0.93197 0.92888 1.45717 1.36887 1.12347 1.39385 1.16442 0.79298 0.85936 0.78991 1.90840 1.68686 1.14724 1.64438 1.26207 1.02700 0.90665 1.02162 1.27735 0.92995 0.98676 0.95420 1.75119 1.17789 1.00230 1.14268 1.85159 1.33902 1.33610 1.35066 1.75501 1.05835 1.11523 1.10054 1.23630 0.96255 1.02458 0.96434 0.92097 0.90066 0.91025 0.88478 0.88456 0.91926 0.89383 0.87281 0.89729 0.87248 0.74989 0.75604 0.89410 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 8.64 59.85 0.52 1.13 16 2 N -0.61 -7.28 2.13 -173.00 -0.37 -7.65 16 3 C 0.53 8.81 7.39 -10.99 -0.08 8.73 16 4 O -0.51 -10.14 14.92 5.55 0.08 -10.05 16 5 C -0.12 -2.28 4.63 36.01 0.17 -2.11 16 6 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16 7 C -0.52 -14.73 10.04 30.94 0.31 -14.42 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 10 N -0.88 -26.26 13.97 55.49 0.78 -25.48 16 11 Si 0.86 21.52 27.74 -169.99 -4.72 16.80 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 15 C 0.13 1.24 4.11 -67.13 -0.28 0.97 16 16 C -0.16 -1.12 7.16 -25.92 -0.19 -1.31 16 17 C 0.12 1.01 4.26 -67.11 -0.29 0.72 16 18 N -0.69 -6.72 3.77 -53.82 -0.20 -6.92 16 19 C 0.61 6.30 7.85 -12.13 -0.10 6.20 16 20 O -0.51 -6.14 16.70 5.37 0.09 -6.05 16 21 C -0.05 -0.51 7.56 -80.07 -0.61 -1.11 16 22 C 0.04 0.30 12.63 -14.29 -0.18 0.12 16 23 N -0.35 -3.37 12.22 30.71 0.38 -2.99 16 24 O 0.35 3.73 11.65 27.27 0.32 4.05 16 25 N -0.31 -3.40 12.13 33.49 0.41 -2.99 16 26 C -0.15 -1.41 7.14 -25.91 -0.18 -1.60 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.80 6.25 -51.93 -0.32 0.48 16 29 H 0.07 0.58 4.67 -51.93 -0.24 0.34 16 30 H 0.10 1.68 7.42 -51.91 -0.39 1.29 16 31 H 0.10 1.71 8.11 -51.92 -0.42 1.29 16 32 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.61 5.79 -51.93 -0.30 0.31 16 36 H 0.11 0.91 7.56 -51.93 -0.39 0.52 16 37 H 0.41 4.39 6.75 -40.82 -0.28 4.12 16 38 H 0.23 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.09 1.09 7.29 -51.93 -0.38 0.72 16 40 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -34.01 352.43 -5.33 -39.34 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.41 Total: 2.09 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -1.00 Total: 0.03 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.99 Total: -46.03 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.49 Total: -12.06 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.72 Total: 16.80 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.01 -5.33 -39.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701907980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.262 kcal (2) G-P(sol) polarization free energy of solvation -34.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds